Wall clock time and date at job start Tue Mar 31 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00528 * 2 1 4 4 O 1.20831 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00713 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47476 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00101 * 94.77089 * 6 5 3 8 8 H 1.07991 * 120.00287 * 226.94449 * 7 6 5 9 9 C 1.38953 * 119.99720 * 46.94512 * 7 6 5 10 10 N 1.31417 * 119.99918 * 207.55835 * 9 7 6 11 11 Si 1.86800 * 120.00301 * 27.55675 * 9 7 6 12 12 H 1.48502 * 109.47193 * 173.49765 * 11 9 7 13 13 H 1.48493 * 109.47078 * 293.50021 * 11 9 7 14 14 H 1.48500 * 109.46873 * 53.50222 * 11 9 7 15 15 C 1.34777 * 119.99723 * 274.77139 * 6 5 3 16 16 O 1.21292 * 120.00163 * 4.66959 * 15 6 5 17 17 C 1.50703 * 119.99610 * 184.67163 * 15 6 5 18 18 H 1.09001 * 115.54571 * 300.17334 * 17 15 6 19 19 C 1.52992 * 117.50222 * 85.84739 * 17 15 6 20 20 C 1.53002 * 117.49633 * 154.50850 * 17 15 6 21 21 H 1.09006 * 117.49627 * 144.99729 * 20 17 15 22 22 C 1.50696 * 117.50112 * 359.97438 * 20 17 15 23 23 C 1.38231 * 119.98797 * 299.73084 * 22 20 17 24 24 C 1.38187 * 120.05091 * 179.72621 * 23 22 20 25 25 C 1.38493 * 120.02487 * 0.54191 * 24 23 22 26 26 F 1.35099 * 120.01410 * 179.75000 * 25 24 23 27 27 C 1.38397 * 119.97378 * 359.73115 * 25 24 23 28 28 C 1.38448 * 119.98644 * 119.99733 * 22 20 17 29 29 F 1.35095 * 120.01469 * 0.02624 * 28 22 20 30 30 H 1.08995 * 109.47197 * 60.00332 * 1 2 3 31 31 H 1.09004 * 109.47702 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46968 * 300.00345 * 1 2 3 33 33 H 1.09004 * 109.47247 * 59.98853 * 5 3 2 34 34 H 1.09011 * 109.46583 * 299.99787 * 5 3 2 35 35 H 0.97000 * 119.99608 * 359.97438 * 10 9 7 36 36 H 1.09004 * 117.50314 * 214.97732 * 19 17 15 37 37 H 1.09005 * 117.49673 * 359.97438 * 19 17 15 38 38 H 1.08003 * 119.97203 * 359.97438 * 23 22 20 39 39 H 1.08000 * 119.98468 * 180.24987 * 24 23 22 40 40 H 1.08003 * 120.02720 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.2712 3.3093 1.1818 8 1 3.8635 4.2881 1.3865 9 6 5.0894 2.6880 2.1175 10 7 4.9568 2.9673 3.3947 11 14 6.3778 1.4557 1.5598 12 1 7.2168 1.0580 2.7187 13 1 5.7055 0.2557 1.0004 14 1 7.2354 2.0740 0.5170 15 6 4.0793 3.3530 -1.1645 16 8 3.7424 2.8230 -2.2021 17 6 4.6069 4.7646 -1.1760 18 1 4.0402 5.4832 -0.5839 19 6 6.1236 4.9513 -1.2514 20 6 5.2517 5.2672 -2.4693 21 1 5.1093 6.3165 -2.7280 22 6 5.3111 4.3126 -3.6339 23 6 5.9935 3.1166 -3.5128 24 6 6.0440 2.2378 -4.5780 25 6 5.4203 2.5595 -5.7719 26 9 5.4741 1.7024 -6.8149 27 6 4.7416 3.7592 -5.8962 28 6 4.6868 4.6364 -4.8264 29 9 4.0250 5.8080 -4.9464 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9558 0.7807 -0.8907 34 1 3.9564 0.7805 0.8893 35 1 4.2880 3.6074 3.6843 36 1 6.5547 5.7930 -0.7092 37 1 6.7398 4.0531 -1.2922 38 1 6.4842 2.8671 -2.5836 39 1 6.5740 1.3018 -4.4809 40 1 4.2552 4.0111 -6.8270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120600324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:56 Heat of formation + Delta-G solvation = -140.418432 kcal Electronic energy + Delta-G solvation = -30318.707371 eV Core-core repulsion = 25736.495224 eV Total energy + Delta-G solvation = -4582.212147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.83411 -48.74954 -40.17632 -39.57913 -38.18469 -36.26191 -35.60133 -34.81805 -32.11568 -30.63697 -30.06365 -28.90928 -26.70973 -24.74737 -23.91481 -23.12429 -22.57981 -20.89225 -20.38235 -19.15678 -18.18382 -17.56370 -17.24174 -17.07692 -16.51487 -16.04159 -15.82339 -15.70913 -15.59839 -15.16145 -15.09646 -14.80662 -14.64129 -14.26657 -14.01935 -13.73821 -13.56695 -13.09586 -12.87284 -12.72866 -12.50522 -12.36064 -11.93392 -11.79505 -11.75692 -11.59150 -11.24322 -11.11256 -10.74491 -10.41928 -10.37129 -10.29993 -10.04324 -9.94246 -9.83908 -9.22018 -8.92377 -8.70005 -8.08674 -8.01843 -6.95127 -4.33204 1.19534 1.27119 2.86911 2.98330 3.02520 3.17627 3.32524 3.49547 3.65630 4.00729 4.07377 4.14289 4.40507 4.64678 4.67474 4.78644 4.84080 5.01490 5.24796 5.32084 5.34726 5.36300 5.41889 5.42227 5.50871 5.74347 5.77238 5.92768 5.96431 5.98008 6.03841 6.10801 6.15027 6.23811 6.29618 6.46189 6.57711 6.84949 6.99929 7.40318 7.79144 8.23450 8.38686 8.85347 9.04777 9.55374 10.36875 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010464 B = 0.004815 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.152288 B = 5813.415362 C = 6739.044111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.495 6.495 5 C 0.111 3.889 6 N -0.441 5.441 7 C -0.425 4.425 8 H 0.084 0.916 9 C 0.034 3.966 10 N -0.853 5.853 11 Si 1.030 2.970 12 H -0.277 1.277 13 H -0.275 1.275 14 H -0.274 1.274 15 C 0.515 3.485 16 O -0.574 6.574 17 C -0.121 4.121 18 H 0.123 0.877 19 C -0.138 4.138 20 C -0.115 4.115 21 H 0.119 0.881 22 C -0.054 4.054 23 C -0.038 4.038 24 C -0.156 4.156 25 C 0.113 3.887 26 F -0.140 7.140 27 C -0.192 4.192 28 C 0.130 3.870 29 F -0.135 7.135 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.279 0.721 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -1.409 -10.064 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.380 6.380 5 C -0.014 4.014 6 N -0.162 5.162 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.178 4.178 10 N -0.483 5.483 11 Si 0.856 3.144 12 H -0.203 1.203 13 H -0.201 1.201 14 H -0.199 1.199 15 C 0.305 3.695 16 O -0.457 6.457 17 C -0.142 4.142 18 H 0.141 0.859 19 C -0.175 4.175 20 C -0.133 4.133 21 H 0.137 0.863 22 C -0.055 4.055 23 C -0.056 4.056 24 C -0.175 4.175 25 C 0.094 3.906 26 F -0.119 7.119 27 C -0.212 4.212 28 C 0.111 3.889 29 F -0.114 7.114 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.057 -2.344 -10.014 10.729 hybrid contribution -1.945 1.203 -0.382 2.319 sum 1.113 -1.140 -10.396 10.518 Atomic orbital electron populations 1.23114 0.77720 1.02783 1.02109 1.86528 1.22546 1.34682 1.84923 1.24925 0.93090 0.81078 0.71962 1.90603 1.66740 1.36398 1.44250 1.21594 0.86321 0.88467 1.05001 1.43291 1.58092 1.08294 1.06508 1.20224 1.33992 1.06246 0.94763 0.89873 1.26442 0.97903 1.00446 0.92987 1.70835 1.34429 1.28812 1.14238 0.84281 0.77333 0.76206 0.76627 1.20262 1.20105 1.19946 1.19721 0.79715 0.86964 0.83065 1.90613 1.52710 1.69888 1.32530 1.21911 0.97096 0.96782 0.98417 0.85881 1.23019 0.92612 1.03607 0.98295 1.21055 1.06628 0.98300 0.87342 0.86330 1.18975 0.97867 0.96035 0.92612 1.20635 0.95723 0.91406 0.97831 1.21014 1.02882 1.01443 0.92117 1.17172 1.00247 0.88291 0.84893 1.91480 1.94916 1.69071 1.56408 1.20796 1.05425 0.94696 1.00254 1.16923 0.95391 0.82713 0.93897 1.91470 1.78479 1.44954 1.96450 0.92446 0.88733 0.92361 0.87781 0.86598 0.90957 0.87602 0.88215 0.84658 0.84574 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.84 10.56 -39.24 -0.41 -7.26 16 3 C 0.45 9.75 7.99 36.00 0.29 10.04 16 4 O -0.49 -12.21 16.08 -18.75 -0.30 -12.51 16 5 C 0.11 2.36 4.58 -5.20 -0.02 2.33 16 6 N -0.44 -10.01 1.49 -116.09 -0.17 -10.18 16 7 C -0.43 -10.32 8.57 -14.93 -0.13 -10.45 16 8 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 9 C 0.03 0.83 5.08 -17.46 -0.09 0.75 16 10 N -0.85 -22.21 13.69 55.50 0.76 -21.45 16 11 Si 1.03 21.05 27.03 -169.99 -4.59 16.45 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.27 -5.12 5.91 56.52 0.33 -4.78 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 15 C 0.52 11.26 6.49 -10.98 -0.07 11.19 16 16 O -0.57 -13.22 13.19 5.55 0.07 -13.15 16 17 C -0.12 -2.27 4.90 -91.77 -0.45 -2.72 16 18 H 0.12 2.30 7.93 -51.93 -0.41 1.89 16 19 C -0.14 -2.14 9.58 -26.70 -0.26 -2.40 16 20 C -0.11 -1.83 5.80 -91.73 -0.53 -2.36 16 21 H 0.12 1.68 7.86 -51.93 -0.41 1.27 16 22 C -0.05 -0.89 4.08 -104.55 -0.43 -1.32 16 23 C -0.04 -0.60 7.03 -39.60 -0.28 -0.88 16 24 C -0.16 -2.27 10.02 -39.51 -0.40 -2.66 16 25 C 0.11 1.68 7.30 -39.43 -0.29 1.39 16 26 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 27 C -0.19 -2.84 10.01 -39.45 -0.39 -3.23 16 28 C 0.13 2.11 7.24 -39.43 -0.29 1.82 16 29 F -0.14 -2.18 16.61 2.25 0.04 -2.14 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.10 2.02 7.64 -51.93 -0.40 1.62 16 34 H 0.12 2.39 4.85 -51.92 -0.25 2.14 16 35 H 0.28 7.30 8.73 -40.82 -0.36 6.95 16 36 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.10 1.55 6.17 -51.93 -0.32 1.23 16 38 H 0.14 2.07 5.94 -52.48 -0.31 1.76 16 39 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -29.37 350.80 -5.81 -35.18 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.26 Total: 8.64 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.26 Total: 3.11 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.59 Total: -31.64 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.64 Total: -32.91 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.59 Total: 16.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.37 -5.81 -35.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.238 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds