Wall clock time and date at job start Tue Mar 31 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00528 * 2 1 4 4 O 1.20831 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00713 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47476 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00101 * 94.77089 * 6 5 3 8 8 H 1.07991 * 120.00287 * 226.94449 * 7 6 5 9 9 C 1.38953 * 119.99720 * 46.94512 * 7 6 5 10 10 N 1.31417 * 119.99918 * 207.55835 * 9 7 6 11 11 Si 1.86800 * 120.00301 * 27.55675 * 9 7 6 12 12 H 1.48502 * 109.47193 * 173.49765 * 11 9 7 13 13 H 1.48493 * 109.47078 * 293.50021 * 11 9 7 14 14 H 1.48500 * 109.46873 * 53.50222 * 11 9 7 15 15 C 1.34777 * 119.99723 * 274.77139 * 6 5 3 16 16 O 1.21292 * 120.00163 * 4.66959 * 15 6 5 17 17 C 1.50703 * 119.99610 * 184.67163 * 15 6 5 18 18 H 1.09001 * 115.54571 * 300.17334 * 17 15 6 19 19 C 1.52992 * 117.50222 * 85.84739 * 17 15 6 20 20 C 1.53002 * 117.49633 * 154.50850 * 17 15 6 21 21 H 1.09006 * 117.49627 * 144.99729 * 20 17 15 22 22 C 1.50696 * 117.50112 * 359.97438 * 20 17 15 23 23 C 1.38231 * 119.98797 * 299.73084 * 22 20 17 24 24 C 1.38187 * 120.05091 * 179.72621 * 23 22 20 25 25 C 1.38493 * 120.02487 * 0.54191 * 24 23 22 26 26 F 1.35099 * 120.01410 * 179.75000 * 25 24 23 27 27 C 1.38397 * 119.97378 * 359.73115 * 25 24 23 28 28 C 1.38448 * 119.98644 * 119.99733 * 22 20 17 29 29 F 1.35095 * 120.01469 * 0.02624 * 28 22 20 30 30 H 1.08995 * 109.47197 * 60.00332 * 1 2 3 31 31 H 1.09004 * 109.47702 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46968 * 300.00345 * 1 2 3 33 33 H 1.09004 * 109.47247 * 59.98853 * 5 3 2 34 34 H 1.09011 * 109.46583 * 299.99787 * 5 3 2 35 35 H 0.97000 * 119.99608 * 359.97438 * 10 9 7 36 36 H 1.09004 * 117.50314 * 214.97732 * 19 17 15 37 37 H 1.09005 * 117.49673 * 359.97438 * 19 17 15 38 38 H 1.08003 * 119.97203 * 359.97438 * 23 22 20 39 39 H 1.08000 * 119.98468 * 180.24987 * 24 23 22 40 40 H 1.08003 * 120.02720 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.2712 3.3093 1.1818 8 1 3.8635 4.2881 1.3865 9 6 5.0894 2.6880 2.1175 10 7 4.9568 2.9673 3.3947 11 14 6.3778 1.4557 1.5598 12 1 7.2168 1.0580 2.7187 13 1 5.7055 0.2557 1.0004 14 1 7.2354 2.0740 0.5170 15 6 4.0793 3.3530 -1.1645 16 8 3.7424 2.8230 -2.2021 17 6 4.6069 4.7646 -1.1760 18 1 4.0402 5.4832 -0.5839 19 6 6.1236 4.9513 -1.2514 20 6 5.2517 5.2672 -2.4693 21 1 5.1093 6.3165 -2.7280 22 6 5.3111 4.3126 -3.6339 23 6 5.9935 3.1166 -3.5128 24 6 6.0440 2.2378 -4.5780 25 6 5.4203 2.5595 -5.7719 26 9 5.4741 1.7024 -6.8149 27 6 4.7416 3.7592 -5.8962 28 6 4.6868 4.6364 -4.8264 29 9 4.0250 5.8080 -4.9464 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9558 0.7807 -0.8907 34 1 3.9564 0.7805 0.8893 35 1 4.2880 3.6074 3.6843 36 1 6.5547 5.7930 -0.7092 37 1 6.7398 4.0531 -1.2922 38 1 6.4842 2.8671 -2.5836 39 1 6.5740 1.3018 -4.4809 40 1 4.2552 4.0111 -6.8270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120600324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:56 Heat of formation + Delta-G solvation = -154.912740 kcal Electronic energy + Delta-G solvation = -30319.335891 eV Core-core repulsion = 25736.495224 eV Total energy + Delta-G solvation = -4582.840667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98281 -49.95731 -41.78329 -41.04579 -39.58903 -37.73087 -37.13304 -36.57814 -33.97361 -31.80298 -31.31322 -30.43908 -28.06241 -26.53922 -25.13348 -24.59161 -23.81046 -22.40450 -21.71162 -20.88243 -19.51222 -19.11194 -18.83555 -18.44511 -17.93061 -17.65782 -17.27157 -16.95868 -16.86454 -16.66590 -16.33209 -16.21210 -16.05036 -15.56720 -15.41315 -15.10339 -15.07067 -14.55476 -14.43363 -14.17811 -14.14914 -13.64938 -13.29701 -13.20767 -13.05776 -13.00969 -12.45774 -12.37103 -12.27883 -12.00940 -11.84665 -11.75242 -11.59546 -11.55308 -11.38046 -10.91828 -10.54332 -9.99788 -9.82940 -9.31944 -8.86820 -6.26455 0.00313 0.10440 1.17229 1.42857 1.43294 1.55192 1.74659 2.04277 2.27613 2.38952 2.56282 2.89758 2.95098 3.06858 3.47078 3.50559 3.63269 3.86088 3.93504 3.98970 4.01606 4.06849 4.16399 4.24169 4.25984 4.26978 4.32163 4.51154 4.60306 4.80858 4.85300 4.86028 4.91296 5.03592 5.09147 5.15166 5.27994 5.38584 5.64987 5.79153 5.84049 6.27873 6.73346 7.01417 7.27524 7.76444 8.42928 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010464 B = 0.004815 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.152288 B = 5813.415362 C = 6739.044111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.448 3.552 4 O -0.535 6.535 5 C 0.104 3.896 6 N -0.451 5.451 7 C -0.417 4.417 8 H 0.048 0.952 9 C 0.004 3.996 10 N -0.883 5.883 11 Si 1.057 2.943 12 H -0.284 1.284 13 H -0.244 1.244 14 H -0.250 1.250 15 C 0.515 3.485 16 O -0.587 6.587 17 C -0.156 4.156 18 H 0.113 0.887 19 C -0.120 4.120 20 C -0.100 4.100 21 H 0.134 0.866 22 C -0.071 4.071 23 C -0.048 4.048 24 C -0.153 4.153 25 C 0.110 3.890 26 F -0.137 7.137 27 C -0.191 4.191 28 C 0.114 3.886 29 F -0.139 7.139 30 H 0.054 0.946 31 H 0.141 0.859 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -3.039 -11.627 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.291 3.709 4 O -0.423 6.423 5 C -0.020 4.020 6 N -0.172 5.172 7 C -0.544 4.544 8 H 0.066 0.934 9 C -0.203 4.203 10 N -0.514 5.514 11 Si 0.876 3.124 12 H -0.210 1.210 13 H -0.169 1.169 14 H -0.174 1.174 15 C 0.306 3.694 16 O -0.471 6.471 17 C -0.177 4.177 18 H 0.131 0.869 19 C -0.157 4.157 20 C -0.118 4.118 21 H 0.152 0.848 22 C -0.072 4.072 23 C -0.066 4.066 24 C -0.171 4.171 25 C 0.090 3.910 26 F -0.115 7.115 27 C -0.211 4.211 28 C 0.095 3.905 29 F -0.118 7.118 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.094 -3.986 -11.599 12.930 hybrid contribution -2.410 1.687 0.036 2.942 sum 1.684 -2.300 -11.563 11.909 Atomic orbital electron populations 1.23508 0.75279 1.05776 1.01850 1.86499 1.24843 1.32698 1.84088 1.25041 0.93484 0.81359 0.71009 1.90587 1.67613 1.37824 1.46301 1.21737 0.86298 0.87831 1.06176 1.43334 1.58806 1.08947 1.06159 1.19883 1.33842 1.05272 0.95406 0.93409 1.27540 0.98890 1.01648 0.92194 1.70959 1.35029 1.29951 1.15456 0.83978 0.75667 0.75788 0.76919 1.20982 1.16904 1.17354 1.20149 0.78888 0.87822 0.82535 1.90586 1.53082 1.70613 1.32791 1.21881 0.99452 0.95036 1.01356 0.86949 1.23158 0.90387 1.04468 0.97642 1.21126 1.05115 0.98959 0.86635 0.84818 1.19153 0.98581 0.96646 0.92846 1.20758 0.95983 0.91407 0.98417 1.21293 1.02280 1.02040 0.91511 1.17259 1.00237 0.88333 0.85141 1.91491 1.94882 1.68911 1.56253 1.21016 1.05017 0.94393 1.00667 1.17099 0.95946 0.83047 0.94427 1.91456 1.78632 1.45178 1.96495 0.92718 0.84087 0.92722 0.85701 0.86032 0.92488 0.85387 0.87825 0.84269 0.82150 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -12.90 10.56 -51.35 -0.54 -13.45 16 3 C 0.45 19.25 7.99 71.23 0.57 19.82 16 4 O -0.53 -26.71 16.08 21.95 0.35 -26.36 16 5 C 0.10 4.29 4.58 85.63 0.39 4.68 16 6 N -0.45 -20.35 1.49 -639.60 -0.95 -21.31 16 7 C -0.42 -20.58 8.57 84.04 0.72 -19.86 16 8 H 0.05 2.66 7.74 -2.92 -0.02 2.63 16 9 C 0.00 0.19 5.08 84.93 0.43 0.62 16 10 N -0.88 -46.90 13.69 21.66 0.30 -46.60 16 11 Si 1.06 40.51 27.03 68.60 1.85 42.37 16 12 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.24 -8.15 5.91 99.48 0.59 -7.56 16 14 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 15 C 0.52 22.33 6.49 87.66 0.57 22.90 16 16 O -0.59 -26.54 13.19 -3.07 -0.04 -26.58 16 17 C -0.16 -5.85 4.90 -11.54 -0.06 -5.90 16 18 H 0.11 4.37 7.93 -2.39 -0.02 4.35 16 19 C -0.12 -3.52 9.58 30.62 0.29 -3.23 16 20 C -0.10 -3.07 5.80 -11.52 -0.07 -3.14 16 21 H 0.13 3.62 7.86 -2.38 -0.02 3.60 16 22 C -0.07 -2.25 4.08 -19.82 -0.08 -2.33 16 23 C -0.05 -1.41 7.03 22.26 0.16 -1.25 16 24 C -0.15 -4.05 10.02 22.32 0.22 -3.83 16 25 C 0.11 2.99 7.30 22.37 0.16 3.16 16 26 F -0.14 -3.59 17.27 44.97 0.78 -2.81 16 27 C -0.19 -5.31 10.01 22.36 0.22 -5.08 16 28 C 0.11 3.55 7.24 22.37 0.16 3.71 16 29 F -0.14 -4.35 16.61 44.97 0.75 -3.61 16 30 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.14 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.13 4.56 7.64 -2.38 -0.02 4.54 16 34 H 0.12 4.80 4.85 -2.38 -0.01 4.79 16 35 H 0.27 14.46 8.73 -92.71 -0.81 13.65 16 36 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.10 2.98 6.17 -2.38 -0.01 2.96 16 38 H 0.14 3.93 5.94 -2.91 -0.02 3.91 16 39 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -64.28 350.80 8.33 -55.95 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.95 Total: 30.15 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 4.90 Total: 12.24 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -0.66 Total: -67.91 kcal Atomic # 8 Polarization: -66.15 SS G_CDS: -0.23 Total: -66.38 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.52 Total: -6.42 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.85 Total: 42.37 kcal Total: -64.28 8.33 -55.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.967 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds