Wall clock time and date at job start Tue Mar 31 2020 22:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00562 * 2 1 4 4 O 1.20829 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00185 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.46754 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99437 * 96.18709 * 6 5 3 8 8 H 1.08002 * 119.99223 * 150.71870 * 7 6 5 9 9 C 1.38947 * 120.00475 * 330.70862 * 7 6 5 10 10 N 1.31410 * 119.99703 * 1.85786 * 9 7 6 11 11 Si 1.86801 * 120.00125 * 181.85632 * 9 7 6 12 12 H 1.48502 * 109.46961 * 60.00205 * 11 9 7 13 13 H 1.48493 * 109.47363 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47081 * 300.00748 * 11 9 7 15 15 C 1.34771 * 119.99551 * 276.18215 * 6 5 3 16 16 O 1.21286 * 120.00530 * 0.02562 * 15 6 5 17 17 C 1.50709 * 119.99251 * 180.02562 * 15 6 5 18 18 H 1.09001 * 115.55064 * 34.28146 * 17 15 6 19 19 C 1.53004 * 117.49677 * 248.60506 * 17 15 6 20 20 C 1.52998 * 60.00007 * 252.51420 * 19 17 15 21 21 H 1.08999 * 117.50269 * 252.50762 * 20 19 17 22 22 C 1.50698 * 117.49716 * 107.49132 * 20 19 17 23 23 C 1.38419 * 120.02895 * 180.39677 * 22 20 19 24 24 F 1.35100 * 120.01044 * 359.97438 * 23 22 20 25 25 C 1.38477 * 119.97848 * 179.70043 * 23 22 20 26 26 C 1.38207 * 120.02111 * 0.59821 * 25 23 22 27 27 C 1.38210 * 120.05181 * 359.67877 * 26 25 23 28 28 C 1.38425 * 120.02664 * 0.67000 * 22 20 19 29 29 F 1.35102 * 120.00808 * 359.97438 * 28 22 20 30 30 H 1.09002 * 109.46831 * 300.00265 * 1 2 3 31 31 H 1.08999 * 109.47013 * 59.99827 * 1 2 3 32 32 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46963 * 299.99509 * 5 3 2 34 34 H 1.08994 * 109.47096 * 59.99994 * 5 3 2 35 35 H 0.97005 * 119.99280 * 179.97438 * 10 9 7 36 36 H 1.08995 * 117.49611 * 0.02562 * 19 17 15 37 37 H 1.08998 * 117.49381 * 145.00104 * 19 17 15 38 38 H 1.07995 * 119.99061 * 180.27874 * 25 23 22 39 39 H 1.07996 * 119.97688 * 179.70407 * 26 25 23 40 40 H 1.08003 * 119.98816 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.2993 3.3009 1.1791 8 1 5.0185 4.1066 1.1887 9 6 3.6957 2.8943 2.3627 10 7 2.8480 1.8902 2.3567 11 14 4.0893 3.7748 3.9625 12 1 3.7168 5.2074 3.8436 13 1 3.3215 3.1536 5.0714 14 1 5.5431 3.6632 4.2442 15 6 4.0519 3.3612 -1.1617 16 8 3.7706 2.8116 -2.2057 17 6 4.4798 4.8062 -1.1622 18 1 5.2256 5.0759 -0.4145 19 6 3.4244 5.8553 -1.5179 20 6 4.5397 5.5247 -2.5117 21 1 5.3251 6.2673 -2.6521 22 6 4.1663 4.7332 -3.7385 23 6 5.1356 4.3980 -4.6681 24 9 6.4170 4.7808 -4.4762 25 6 4.7925 3.6654 -5.7920 26 6 3.4806 3.2795 -5.9919 27 6 2.5108 3.6185 -5.0673 28 6 2.8527 4.3457 -3.9396 29 9 1.9047 4.6765 -3.0357 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.9564 0.7805 0.8892 34 1 3.9557 0.7808 -0.8908 35 1 2.4269 1.6061 3.1831 36 1 2.4206 5.5004 -1.7511 37 1 3.4759 6.8153 -1.0041 38 1 5.5494 3.3999 -6.5151 39 1 3.2129 2.7123 -6.8711 40 1 1.4860 3.3161 -5.2244 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120601436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:59 Heat of formation + Delta-G solvation = -134.704383 kcal Electronic energy + Delta-G solvation = -31152.748077 eV Core-core repulsion = 26570.783710 eV Total energy + Delta-G solvation = -4581.964367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.22007 -49.88024 -41.39619 -40.58972 -39.42927 -37.71797 -36.86216 -36.36367 -33.44689 -31.70650 -31.10521 -30.37227 -27.99355 -26.81603 -25.06246 -24.35388 -23.65306 -22.49733 -21.74788 -20.92249 -19.13353 -18.81023 -18.57532 -18.30768 -17.76530 -17.27410 -17.09200 -16.83146 -16.72207 -16.47571 -16.25355 -16.15885 -15.84776 -15.61085 -15.55552 -14.98382 -14.70516 -14.24744 -14.01880 -13.99083 -13.92808 -13.28292 -13.06628 -12.99458 -12.95919 -12.90226 -12.75895 -12.55141 -12.40054 -12.14155 -11.76526 -11.55888 -11.49289 -11.35974 -11.23511 -10.91197 -10.51189 -9.78550 -9.55140 -9.27526 -8.34864 -6.02849 0.15238 0.19709 1.43208 1.45264 1.54866 1.70201 1.84615 2.15147 2.33692 2.50309 2.80179 2.98335 3.13287 3.18399 3.53467 3.60557 3.81762 3.93955 4.02110 4.08362 4.23759 4.31400 4.34784 4.37035 4.40111 4.44014 4.58521 4.70853 4.78776 4.81353 4.92636 5.01748 5.06332 5.14687 5.16333 5.30866 5.38929 5.42792 5.68453 5.82349 5.96979 6.34278 7.09071 7.27358 7.51018 7.90780 8.71701 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.005091 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.111504 B = 5498.300640 C = 6784.502692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.379 6.379 3 C 0.491 3.509 4 O -0.539 6.539 5 C 0.161 3.839 6 N -0.442 5.442 7 C -0.344 4.344 8 H 0.109 0.891 9 C -0.001 4.001 10 N -0.906 5.906 11 Si 0.995 3.005 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.259 1.259 15 C 0.496 3.504 16 O -0.603 6.603 17 C -0.158 4.158 18 H 0.130 0.870 19 C -0.178 4.178 20 C -0.096 4.096 21 H 0.141 0.859 22 C -0.106 4.106 23 C 0.107 3.893 24 F -0.140 7.140 25 C -0.163 4.163 26 C -0.061 4.061 27 C -0.174 4.174 28 C 0.142 3.858 29 F -0.136 7.136 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 1.688 -10.934 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.296 6.296 3 C 0.334 3.666 4 O -0.426 6.426 5 C 0.036 3.964 6 N -0.161 5.161 7 C -0.471 4.471 8 H 0.127 0.873 9 C -0.202 4.202 10 N -0.545 5.545 11 Si 0.819 3.181 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.183 1.183 15 C 0.286 3.714 16 O -0.489 6.489 17 C -0.179 4.179 18 H 0.147 0.853 19 C -0.214 4.214 20 C -0.115 4.115 21 H 0.158 0.842 22 C -0.107 4.107 23 C 0.088 3.912 24 F -0.119 7.119 25 C -0.182 4.182 26 C -0.079 4.079 27 C -0.193 4.193 28 C 0.123 3.877 29 F -0.115 7.115 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.185 0.815 39 H 0.196 0.804 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.740 1.610 -11.228 11.367 hybrid contribution -0.279 0.411 1.802 1.869 sum 0.461 2.020 -9.426 9.651 Atomic orbital electron populations 1.23248 0.76405 1.04712 1.00984 1.86422 1.23936 1.34067 1.85181 1.23985 0.92543 0.80651 0.69379 1.90479 1.67296 1.37621 1.47248 1.20415 0.87077 0.85890 1.03049 1.43404 1.57993 1.08131 1.06539 1.19884 1.23999 1.19194 0.84063 0.87321 1.26157 0.94334 0.96744 1.02977 1.69693 1.28765 1.27081 1.28987 0.84948 0.78686 0.78097 0.76351 1.19781 1.21338 1.18320 1.19913 0.80234 0.87917 0.83308 1.90517 1.55597 1.70688 1.32086 1.22073 1.04997 0.91520 0.99263 0.85275 1.24177 0.97268 0.99440 1.00534 1.20979 1.03053 1.00771 0.86672 0.84168 1.19001 0.92302 1.02889 0.96554 1.17300 0.77894 0.99762 0.96231 1.91448 1.35476 1.89510 1.95425 1.21402 0.99049 1.00367 0.97357 1.21119 0.90522 0.97143 0.99127 1.21382 1.02704 1.00856 0.94317 1.17379 0.84863 0.97821 0.87620 1.91086 1.64336 1.90267 1.65776 0.93863 0.93257 0.84853 0.86229 0.90182 0.92084 0.85930 0.86018 0.81549 0.80404 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.59 16 2 O -0.38 -16.73 10.56 -51.43 -0.54 -17.27 16 3 C 0.49 25.16 5.98 71.23 0.43 25.59 16 4 O -0.54 -30.94 15.61 21.95 0.34 -30.60 16 5 C 0.16 8.03 5.13 85.63 0.44 8.47 16 6 N -0.44 -22.68 2.17 -639.60 -1.39 -24.07 16 7 C -0.34 -17.39 8.94 84.04 0.75 -16.64 16 8 H 0.11 5.09 6.25 -2.91 -0.02 5.07 16 9 C 0.00 -0.07 5.30 84.93 0.45 0.38 16 10 N -0.91 -47.83 8.60 21.66 0.19 -47.65 16 11 Si 1.00 40.12 29.55 68.60 2.03 42.15 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 13 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 15 C 0.50 24.37 7.05 87.66 0.62 24.99 16 16 O -0.60 -30.56 11.91 -3.05 -0.04 -30.60 16 17 C -0.16 -6.53 5.29 -11.54 -0.06 -6.59 16 18 H 0.13 4.98 6.68 -2.39 -0.02 4.96 16 19 C -0.18 -6.63 9.40 30.59 0.29 -6.34 16 20 C -0.10 -3.43 5.71 -11.54 -0.07 -3.49 16 21 H 0.14 4.18 8.06 -2.39 -0.02 4.16 16 22 C -0.11 -3.84 3.93 -19.78 -0.08 -3.92 16 23 C 0.11 3.45 7.25 22.37 0.16 3.61 16 24 F -0.14 -4.44 16.74 44.97 0.75 -3.69 16 25 C -0.16 -4.11 10.03 22.32 0.22 -3.89 16 26 C -0.06 -1.44 10.04 22.26 0.22 -1.21 16 27 C -0.17 -5.21 10.02 22.32 0.22 -4.98 16 28 C 0.14 5.31 4.93 22.37 0.11 5.42 16 29 F -0.14 -5.73 12.73 44.97 0.57 -5.16 16 30 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.12 6.00 6.58 -2.39 -0.02 5.99 16 34 H 0.08 3.78 7.61 -2.39 -0.02 3.76 16 35 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 36 H 0.12 5.23 4.41 -2.39 -0.01 5.22 16 37 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.31 343.37 7.92 -61.38 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 1.10 Total: 31.52 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 4.91 Total: 23.99 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.20 Total: -71.71 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -0.24 Total: -78.47 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 1.33 Total: -8.85 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -69.31 7.92 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120601436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.322 kcal (2) G-P(sol) polarization free energy of solvation -69.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds