Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00200 * 2 1 4 4 O 1.20828 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99970 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47486 * 184.84136 * 5 3 2 7 7 C 1.37099 * 119.99405 * 93.76144 * 6 5 3 8 8 H 1.08004 * 120.00733 * 304.07364 * 7 6 5 9 9 C 1.38956 * 119.99769 * 124.07545 * 7 6 5 10 10 N 1.31413 * 120.00175 * 161.60876 * 9 7 6 11 11 Si 1.86801 * 119.99715 * 341.61649 * 9 7 6 12 12 H 1.48495 * 109.47302 * 95.14791 * 11 9 7 13 13 H 1.48504 * 109.46808 * 215.14569 * 11 9 7 14 14 H 1.48500 * 109.47364 * 335.14277 * 11 9 7 15 15 C 1.34772 * 120.00272 * 274.04557 * 6 5 3 16 16 O 1.21294 * 120.00207 * 3.30420 * 15 6 5 17 17 C 1.50700 * 120.00036 * 183.30303 * 15 6 5 18 18 H 1.09003 * 115.54673 * 32.87331 * 17 15 6 19 19 C 1.53006 * 117.49909 * 247.16824 * 17 15 6 20 20 C 1.52996 * 117.50055 * 178.54555 * 17 15 6 21 21 H 1.09000 * 117.49862 * 359.97438 * 20 17 15 22 22 C 1.50701 * 117.50184 * 214.98092 * 20 17 15 23 23 C 1.38422 * 120.02034 * 308.56792 * 22 20 17 24 24 F 1.35098 * 120.01278 * 359.97114 * 23 22 20 25 25 C 1.38474 * 119.96875 * 179.74127 * 23 22 20 26 26 C 1.38206 * 120.02957 * 0.50876 * 25 23 22 27 27 C 1.38209 * 120.04672 * 359.76243 * 26 25 23 28 28 C 1.38414 * 120.03012 * 128.83725 * 22 20 17 29 29 F 1.35109 * 120.00918 * 359.97438 * 28 22 20 30 30 H 1.08999 * 109.46998 * 59.99726 * 1 2 3 31 31 H 1.08997 * 109.47615 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47244 * 300.00385 * 1 2 3 33 33 H 1.09009 * 109.46986 * 64.84395 * 5 3 2 34 34 H 1.08995 * 109.47198 * 304.84960 * 5 3 2 35 35 H 0.96995 * 119.99950 * 179.97438 * 10 9 7 36 36 H 1.08993 * 117.49821 * 359.97438 * 19 17 15 37 37 H 1.09000 * 117.49739 * 145.01804 * 19 17 15 38 38 H 1.08003 * 119.98327 * 180.27346 * 25 23 22 39 39 H 1.07998 * 119.97948 * 179.74757 * 26 25 23 40 40 H 1.08004 * 119.98241 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9820 2.6747 0.1170 7 6 4.2560 3.2080 1.3500 8 1 3.5116 3.1717 2.1317 9 6 5.4915 3.7954 1.5939 10 7 5.6413 4.6116 2.6129 11 14 6.9393 3.4248 0.4733 12 1 7.0436 4.4801 -0.5662 13 1 8.1896 3.3935 1.2740 14 1 6.7359 2.1062 -0.1787 15 6 4.0897 3.4398 -0.9872 16 8 3.7849 2.9875 -2.0706 17 6 4.5886 4.8575 -0.8759 18 1 5.3269 5.0360 -0.0941 19 6 3.5966 5.9816 -1.1815 20 6 4.7206 5.6635 -2.1696 21 1 4.4469 5.1684 -3.1013 22 6 5.8611 6.6440 -2.2654 23 6 6.0611 7.5740 -1.2599 24 9 5.2336 7.6036 -0.1924 25 6 7.1126 8.4709 -1.3464 26 6 7.9558 8.4446 -2.4411 27 6 7.7536 7.5200 -3.4483 28 6 6.7060 6.6188 -3.3615 29 9 6.5088 5.7148 -4.3460 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.9524 0.8573 -0.9295 34 1 3.9595 0.7075 0.8442 35 1 6.5038 5.0213 2.7833 36 1 2.5833 5.6958 -1.4633 37 1 3.6821 6.8999 -0.6005 38 1 7.2715 9.1937 -0.5598 39 1 8.7732 9.1471 -2.5096 40 1 8.4129 7.5007 -4.3035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120601742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = -143.589151 kcal Electronic energy + Delta-G solvation = -30367.238104 eV Core-core repulsion = 25784.888464 eV Total energy + Delta-G solvation = -4582.349640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.27033 -50.06546 -41.81338 -40.94446 -39.85696 -37.87916 -37.28307 -36.72161 -34.20691 -31.91641 -31.31014 -30.61054 -28.16196 -26.76746 -25.36207 -24.68457 -23.82850 -22.55223 -22.00302 -21.05573 -19.78708 -19.13906 -18.81516 -18.33499 -17.97472 -17.58910 -17.36712 -17.12950 -16.98394 -16.69777 -16.60458 -16.38991 -16.16065 -15.72919 -15.51208 -15.26073 -15.00699 -14.58000 -14.38388 -14.25380 -14.05751 -13.92175 -13.27690 -13.23177 -13.14720 -13.01723 -12.98729 -12.93897 -12.45784 -12.14716 -12.06465 -11.82704 -11.75610 -11.72513 -11.37387 -11.11295 -10.77981 -9.80100 -9.78438 -9.72558 -8.58470 -6.43367 -0.12901 -0.07271 1.16586 1.17203 1.22445 1.26117 1.37954 1.78761 2.07671 2.25716 2.45751 2.72517 2.84374 2.91082 3.30255 3.37734 3.55890 3.77197 3.82971 3.88926 3.93829 4.05034 4.18577 4.22612 4.26657 4.29673 4.32543 4.36927 4.59726 4.63838 4.80069 4.82140 4.88860 4.94088 5.01669 5.14492 5.15202 5.27691 5.57273 5.62992 5.74957 6.25259 6.72805 6.82920 7.11142 7.54836 8.53526 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.004299 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.092317 B = 6511.880155 C = 7141.262122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.451 3.549 4 O -0.533 6.533 5 C 0.110 3.890 6 N -0.459 5.459 7 C -0.355 4.355 8 H 0.068 0.932 9 C 0.062 3.938 10 N -0.876 5.876 11 Si 0.890 3.110 12 H -0.260 1.260 13 H -0.265 1.265 14 H -0.261 1.261 15 C 0.521 3.479 16 O -0.602 6.602 17 C -0.173 4.173 18 H 0.126 0.874 19 C -0.143 4.143 20 C -0.096 4.096 21 H 0.115 0.885 22 C -0.143 4.143 23 C 0.103 3.897 24 F -0.132 7.132 25 C -0.154 4.154 26 C -0.050 4.050 27 C -0.150 4.150 28 C 0.108 3.892 29 F -0.141 7.141 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.284 0.716 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.195 0.805 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 4.611 -7.935 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.294 3.706 4 O -0.421 6.421 5 C -0.015 4.015 6 N -0.180 5.180 7 C -0.482 4.482 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.511 5.511 11 Si 0.712 3.288 12 H -0.185 1.185 13 H -0.190 1.190 14 H -0.185 1.185 15 C 0.312 3.688 16 O -0.487 6.487 17 C -0.194 4.194 18 H 0.144 0.856 19 C -0.180 4.180 20 C -0.115 4.115 21 H 0.133 0.867 22 C -0.145 4.145 23 C 0.083 3.917 24 F -0.110 7.110 25 C -0.173 4.173 26 C -0.068 4.068 27 C -0.169 4.169 28 C 0.089 3.911 29 F -0.119 7.119 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.189 0.811 39 H 0.212 0.788 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.716 4.725 -8.298 10.650 hybrid contribution -0.369 -0.625 0.076 0.729 sum 4.347 4.100 -8.223 10.164 Atomic orbital electron populations 1.23532 0.75048 1.05824 1.02018 1.86481 1.24919 1.32166 1.84061 1.24735 0.93193 0.81473 0.71239 1.90619 1.67548 1.37850 1.46130 1.21311 0.86702 0.86493 1.06954 1.43260 1.60767 1.07702 1.06272 1.18598 0.99975 1.40464 0.89145 0.91476 1.25852 0.98803 0.93652 0.96214 1.69764 1.26358 1.25371 1.29560 0.86784 0.81035 0.80698 0.80244 1.18478 1.19022 1.18538 1.20127 0.77955 0.86941 0.83756 1.90502 1.54551 1.74854 1.28761 1.22430 1.05854 0.90907 1.00187 0.85612 1.23578 0.94110 0.99697 1.00637 1.20839 0.96763 0.99139 0.94724 0.86684 1.19317 0.99268 0.99279 0.96595 1.17700 0.92105 0.97770 0.84101 1.91356 1.69945 1.95701 1.54040 1.21657 0.93849 0.99652 1.02123 1.21413 0.98391 0.96952 0.89997 1.21628 0.96963 0.95243 1.03042 1.17544 0.97067 0.90848 0.85676 1.91488 1.94782 1.65889 1.59775 0.92738 0.84037 0.92449 0.86420 0.83809 0.90546 0.89034 0.84361 0.81127 0.78821 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -12.23 10.57 -51.39 -0.54 -12.77 16 3 C 0.45 19.17 8.00 71.23 0.57 19.74 16 4 O -0.53 -26.66 16.04 21.96 0.35 -26.31 16 5 C 0.11 4.65 5.91 85.63 0.51 5.15 16 6 N -0.46 -23.36 1.42 -639.60 -0.91 -24.26 16 7 C -0.35 -19.35 9.22 84.04 0.77 -18.57 16 8 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 9 C 0.06 3.29 3.98 84.93 0.34 3.63 16 10 N -0.88 -47.87 13.96 21.67 0.30 -47.56 16 11 Si 0.89 41.57 24.77 68.60 1.70 43.27 16 12 H -0.26 -12.12 6.23 99.48 0.62 -11.50 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 15 C 0.52 27.27 5.87 87.66 0.51 27.78 16 16 O -0.60 -32.72 15.94 -3.07 -0.05 -32.77 16 17 C -0.17 -8.42 3.03 -11.54 -0.03 -8.45 16 18 H 0.13 6.40 3.15 -2.39 -0.01 6.40 16 19 C -0.14 -6.19 9.37 30.60 0.29 -5.91 16 20 C -0.10 -4.06 5.39 -11.54 -0.06 -4.13 16 21 H 0.12 5.07 7.23 -2.39 -0.02 5.05 16 22 C -0.14 -5.11 5.65 -19.78 -0.11 -5.22 16 23 C 0.10 3.32 7.05 22.37 0.16 3.48 16 24 F -0.13 -4.90 12.93 44.97 0.58 -4.32 16 25 C -0.15 -3.39 10.02 22.32 0.22 -3.17 16 26 C -0.05 -0.80 10.04 22.26 0.22 -0.58 16 27 C -0.15 -3.02 10.02 22.32 0.22 -2.80 16 28 C 0.11 3.29 7.25 22.37 0.16 3.45 16 29 F -0.14 -4.69 16.51 44.97 0.74 -3.95 16 30 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.52 8.13 -2.39 -0.02 1.51 16 33 H 0.12 4.66 7.60 -2.38 -0.02 4.64 16 34 H 0.14 5.23 8.01 -2.39 -0.02 5.21 16 35 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.09 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.14 5.60 5.10 -2.39 -0.01 5.59 16 38 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -74.61 348.10 8.17 -66.45 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 1.02 Total: 25.88 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 4.97 Total: 16.35 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -0.60 Total: -71.82 kcal Atomic # 8 Polarization: -71.61 SS G_CDS: -0.24 Total: -71.85 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 1.32 Total: -8.27 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.70 Total: 43.27 kcal Total: -74.61 8.17 -66.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120601742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.144 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds