Wall clock time and date at job start Tue Mar 31 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00087 * 2 1 4 4 O 1.20830 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99828 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46791 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99899 * 269.99725 * 6 5 3 8 8 H 1.08005 * 120.00248 * 195.98236 * 7 6 5 9 9 C 1.38951 * 120.00089 * 15.97903 * 7 6 5 10 10 N 1.31412 * 120.00188 * 5.90565 * 9 7 6 11 11 Si 1.86800 * 119.99987 * 185.90302 * 9 7 6 12 12 H 1.48492 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47022 * 120.00311 * 11 9 7 14 14 H 1.48499 * 109.47121 * 239.99778 * 11 9 7 15 15 C 1.34770 * 120.00432 * 90.00003 * 6 5 3 16 16 O 1.21299 * 119.99882 * 4.86034 * 15 6 5 17 17 C 1.50701 * 120.00442 * 184.86329 * 15 6 5 18 18 H 1.09004 * 115.56175 * 334.98806 * 17 15 6 19 19 C 1.53006 * 117.49858 * 120.67174 * 17 15 6 20 20 C 1.52996 * 117.50137 * 189.29517 * 17 15 6 21 21 H 1.08997 * 117.52051 * 145.02550 * 20 17 15 22 22 C 1.50703 * 117.49808 * 0.02562 * 20 17 15 23 23 C 1.38423 * 120.02315 * 76.23789 * 22 20 17 24 24 F 1.35099 * 120.01782 * 359.97438 * 23 22 20 25 25 C 1.38479 * 119.97304 * 180.25045 * 23 22 20 26 26 C 1.38212 * 120.02171 * 359.47138 * 25 23 22 27 27 C 1.38209 * 120.05221 * 0.25352 * 26 25 23 28 28 C 1.38412 * 120.02661 * 255.93674 * 22 20 17 29 29 F 1.35100 * 120.01531 * 0.02657 * 28 22 20 30 30 H 1.08994 * 109.47049 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46936 * 299.99888 * 1 2 3 33 33 H 1.09004 * 109.47491 * 59.99896 * 5 3 2 34 34 H 1.08998 * 109.47245 * 299.99451 * 5 3 2 35 35 H 0.96993 * 120.00330 * 184.99645 * 10 9 7 36 36 H 1.08993 * 117.50016 * 0.02562 * 19 17 15 37 37 H 1.08990 * 117.51675 * 214.97061 * 19 17 15 38 38 H 1.07995 * 119.98898 * 179.74518 * 25 23 22 39 39 H 1.08005 * 119.97516 * 180.27295 * 26 25 23 40 40 H 1.07998 * 119.98480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1756 3.3367 -1.1886 8 1 4.7200 4.2694 -1.2072 9 6 3.6720 2.8027 -2.3684 10 7 2.9120 1.7312 -2.3329 11 14 4.0752 3.6079 -4.0050 12 1 4.9430 4.7906 -3.7744 13 1 4.7857 2.6351 -4.8736 14 1 2.8180 4.0375 -4.6684 15 6 4.1732 3.3262 1.1658 16 8 4.0879 2.7228 2.2146 17 6 4.4932 4.7989 1.1677 18 1 4.9621 5.1794 0.2602 19 6 3.5323 5.7297 1.9101 20 6 4.9128 5.4290 2.4972 21 1 5.6576 6.2241 2.4649 22 6 4.9750 4.5293 3.7047 23 6 6.0354 3.6536 3.8620 24 9 7.0150 3.6046 2.9329 25 6 6.0889 2.8238 4.9693 26 6 5.0896 2.8774 5.9226 27 6 4.0333 3.7554 5.7693 28 6 3.9751 4.5825 4.6602 29 9 2.9424 5.4406 4.5108 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7808 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6201 1.3160 -3.1595 36 1 2.6689 5.2769 2.3975 37 1 3.3689 6.7226 1.4915 38 1 6.9140 2.1375 5.0902 39 1 5.1343 2.2329 6.7881 40 1 3.2532 3.7967 6.5151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120601887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:09 Heat of formation + Delta-G solvation = -128.779116 kcal Electronic energy + Delta-G solvation = -30877.962534 eV Core-core repulsion = 26296.255106 eV Total energy + Delta-G solvation = -4581.707428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.63796 -48.50179 -39.65263 -38.97900 -38.02944 -36.18599 -35.09464 -34.49934 -31.55141 -30.43053 -29.91786 -28.62449 -26.41368 -24.98819 -23.74054 -23.01959 -22.23293 -20.80625 -19.96919 -19.14033 -17.82541 -17.17487 -16.76705 -16.56790 -16.44965 -15.64606 -15.43666 -15.36724 -15.17195 -15.15248 -14.84841 -14.59291 -14.24968 -14.04314 -13.98694 -13.37565 -13.26803 -12.61242 -12.47418 -12.36281 -12.29343 -11.92334 -11.71218 -11.60068 -11.36170 -11.31872 -11.22928 -10.81566 -10.74912 -10.61703 -10.39778 -10.00480 -9.87646 -9.78621 -9.53776 -9.00549 -8.84074 -8.36646 -8.11440 -7.91842 -6.45341 -4.03641 1.36925 1.40214 3.05247 3.16686 3.20446 3.38327 3.67698 3.76276 3.81891 4.08758 4.31976 4.34551 4.58274 4.80664 4.83882 4.98058 5.03011 5.25359 5.37651 5.48394 5.50309 5.62258 5.72410 5.79822 5.97971 5.99907 6.02856 6.14822 6.19815 6.29056 6.30071 6.35401 6.44571 6.45742 6.53160 6.61423 6.86845 7.14840 7.29857 7.48862 7.61667 8.22913 8.96402 9.17043 9.35129 9.73609 10.57741 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.004778 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.888918 B = 5859.057527 C = 6809.203575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.492 3.508 4 O -0.511 6.511 5 C 0.158 3.842 6 N -0.427 5.427 7 C -0.317 4.317 8 H 0.104 0.896 9 C 0.034 3.966 10 N -0.887 5.887 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.497 3.503 16 O -0.590 6.590 17 C -0.139 4.139 18 H 0.125 0.875 19 C -0.137 4.137 20 C -0.113 4.113 21 H 0.120 0.880 22 C -0.075 4.075 23 C 0.156 3.844 24 F -0.132 7.132 25 C -0.164 4.164 26 C -0.075 4.075 27 C -0.167 4.167 28 C 0.133 3.867 29 F -0.133 7.133 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 1.560 9.611 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.334 3.666 4 O -0.397 6.397 5 C 0.032 3.968 6 N -0.145 5.145 7 C -0.444 4.444 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.528 5.528 11 Si 0.761 3.239 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.207 1.207 15 C 0.287 3.713 16 O -0.476 6.476 17 C -0.159 4.159 18 H 0.143 0.857 19 C -0.174 4.174 20 C -0.132 4.132 21 H 0.138 0.862 22 C -0.077 4.077 23 C 0.136 3.864 24 F -0.110 7.110 25 C -0.183 4.183 26 C -0.093 4.093 27 C -0.186 4.186 28 C 0.113 3.887 29 F -0.112 7.112 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.778 1.508 9.895 10.387 hybrid contribution -0.342 0.453 -1.510 1.613 sum 2.435 1.960 8.385 8.949 Atomic orbital electron populations 1.22904 0.78983 1.01684 1.01461 1.86459 1.21419 1.35598 1.85708 1.23901 0.92244 0.80418 0.70041 1.90503 1.66631 1.36424 1.46111 1.20601 0.87055 0.85269 1.03835 1.43274 1.57463 1.08454 1.05285 1.19806 1.33135 1.08049 0.83454 0.87799 1.25225 0.94629 0.96774 1.00202 1.69616 1.33520 1.21210 1.28479 0.85745 0.78129 0.79022 0.81027 1.19305 1.20540 1.20740 1.19153 0.81604 0.87140 0.83447 1.90564 1.57868 1.67937 1.31185 1.22263 1.04249 0.94170 0.95267 0.85729 1.23022 0.92960 0.99872 1.01560 1.20816 1.00544 1.00413 0.91413 0.86209 1.18823 0.94343 0.98906 0.95628 1.16982 0.86307 0.95996 0.87090 1.91488 1.59799 1.95275 1.64429 1.20996 1.01670 1.00945 0.94716 1.20604 0.92749 0.97426 0.98570 1.20983 1.00922 0.98469 0.98263 1.17043 0.85212 0.91187 0.95239 1.91456 1.56198 1.67980 1.95551 0.92764 0.89687 0.93324 0.84822 0.90478 0.91674 0.87839 0.88025 0.84869 0.84827 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.31 10.57 -39.26 -0.41 -8.72 16 3 C 0.49 12.43 5.91 36.00 0.21 12.65 16 4 O -0.51 -14.38 15.93 -18.75 -0.30 -14.68 16 5 C 0.16 3.87 5.29 -5.20 -0.03 3.84 16 6 N -0.43 -10.78 2.11 -116.10 -0.25 -11.02 16 7 C -0.32 -7.94 9.25 -14.93 -0.14 -8.08 16 8 H 0.10 2.43 5.81 -52.48 -0.30 2.13 16 9 C 0.03 0.84 5.26 -17.47 -0.09 0.75 16 10 N -0.89 -22.85 8.26 55.50 0.46 -22.39 16 11 Si 0.93 19.52 29.56 -169.99 -5.02 14.50 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.50 11.98 7.33 -10.99 -0.08 11.90 16 16 O -0.59 -14.75 12.73 5.54 0.07 -14.68 16 17 C -0.14 -2.82 5.49 -91.77 -0.50 -3.32 16 18 H 0.12 2.40 6.20 -51.93 -0.32 2.08 16 19 C -0.14 -2.48 8.91 -26.73 -0.24 -2.72 16 20 C -0.11 -1.98 5.49 -91.77 -0.50 -2.49 16 21 H 0.12 1.77 8.14 -51.93 -0.42 1.34 16 22 C -0.08 -1.35 3.35 -104.49 -0.35 -1.70 16 23 C 0.16 2.74 5.89 -39.42 -0.23 2.50 16 24 F -0.13 -2.42 16.80 2.25 0.04 -2.38 16 25 C -0.16 -2.41 10.03 -39.50 -0.40 -2.81 16 26 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 27 C -0.17 -2.41 10.03 -39.51 -0.40 -2.81 16 28 C 0.13 2.27 7.02 -39.43 -0.28 1.99 16 29 F -0.13 -2.30 14.52 2.25 0.03 -2.27 16 30 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.13 3.29 6.21 -51.93 -0.32 2.97 16 34 H 0.08 1.80 7.36 -51.93 -0.38 1.42 16 35 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.10 2.10 6.56 -51.93 -0.34 1.76 16 37 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -31.44 346.96 -6.70 -38.14 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.19 Total: 8.09 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -2.35 Total: 10.19 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.21 Total: -33.41 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.64 Total: -38.08 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.44 -6.70 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120601887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.641 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds