Wall clock time and date at job start Tue Mar 31 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00087 * 2 1 4 4 O 1.20830 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99828 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46791 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99899 * 269.99725 * 6 5 3 8 8 H 1.08005 * 120.00248 * 195.98236 * 7 6 5 9 9 C 1.38951 * 120.00089 * 15.97903 * 7 6 5 10 10 N 1.31412 * 120.00188 * 5.90565 * 9 7 6 11 11 Si 1.86800 * 119.99987 * 185.90302 * 9 7 6 12 12 H 1.48492 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47022 * 120.00311 * 11 9 7 14 14 H 1.48499 * 109.47121 * 239.99778 * 11 9 7 15 15 C 1.34770 * 120.00432 * 90.00003 * 6 5 3 16 16 O 1.21299 * 119.99882 * 4.86034 * 15 6 5 17 17 C 1.50701 * 120.00442 * 184.86329 * 15 6 5 18 18 H 1.09004 * 115.56175 * 334.98806 * 17 15 6 19 19 C 1.53006 * 117.49858 * 120.67174 * 17 15 6 20 20 C 1.52996 * 117.50137 * 189.29517 * 17 15 6 21 21 H 1.08997 * 117.52051 * 145.02550 * 20 17 15 22 22 C 1.50703 * 117.49808 * 0.02562 * 20 17 15 23 23 C 1.38423 * 120.02315 * 76.23789 * 22 20 17 24 24 F 1.35099 * 120.01782 * 359.97438 * 23 22 20 25 25 C 1.38479 * 119.97304 * 180.25045 * 23 22 20 26 26 C 1.38212 * 120.02171 * 359.47138 * 25 23 22 27 27 C 1.38209 * 120.05221 * 0.25352 * 26 25 23 28 28 C 1.38412 * 120.02661 * 255.93674 * 22 20 17 29 29 F 1.35100 * 120.01531 * 0.02657 * 28 22 20 30 30 H 1.08994 * 109.47049 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46936 * 299.99888 * 1 2 3 33 33 H 1.09004 * 109.47491 * 59.99896 * 5 3 2 34 34 H 1.08998 * 109.47245 * 299.99451 * 5 3 2 35 35 H 0.96993 * 120.00330 * 184.99645 * 10 9 7 36 36 H 1.08993 * 117.50016 * 0.02562 * 19 17 15 37 37 H 1.08990 * 117.51675 * 214.97061 * 19 17 15 38 38 H 1.07995 * 119.98898 * 179.74518 * 25 23 22 39 39 H 1.08005 * 119.97516 * 180.27295 * 26 25 23 40 40 H 1.07998 * 119.98480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1756 3.3367 -1.1886 8 1 4.7200 4.2694 -1.2072 9 6 3.6720 2.8027 -2.3684 10 7 2.9120 1.7312 -2.3329 11 14 4.0752 3.6079 -4.0050 12 1 4.9430 4.7906 -3.7744 13 1 4.7857 2.6351 -4.8736 14 1 2.8180 4.0375 -4.6684 15 6 4.1732 3.3262 1.1658 16 8 4.0879 2.7228 2.2146 17 6 4.4932 4.7989 1.1677 18 1 4.9621 5.1794 0.2602 19 6 3.5323 5.7297 1.9101 20 6 4.9128 5.4290 2.4972 21 1 5.6576 6.2241 2.4649 22 6 4.9750 4.5293 3.7047 23 6 6.0354 3.6536 3.8620 24 9 7.0150 3.6046 2.9329 25 6 6.0889 2.8238 4.9693 26 6 5.0896 2.8774 5.9226 27 6 4.0333 3.7554 5.7693 28 6 3.9751 4.5825 4.6602 29 9 2.9424 5.4406 4.5108 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7808 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6201 1.3160 -3.1595 36 1 2.6689 5.2769 2.3975 37 1 3.3689 6.7226 1.4915 38 1 6.9140 2.1375 5.0902 39 1 5.1343 2.2329 6.7881 40 1 3.2532 3.7967 6.5151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120601887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:08 Heat of formation + Delta-G solvation = -144.915629 kcal Electronic energy + Delta-G solvation = -30878.662266 eV Core-core repulsion = 26296.255106 eV Total energy + Delta-G solvation = -4582.407160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91744 -49.83111 -41.43958 -40.64786 -39.44258 -37.76860 -36.90146 -36.38934 -33.43926 -31.69871 -31.08885 -30.42255 -28.02400 -26.83419 -25.07610 -24.53298 -23.54497 -22.22542 -21.72829 -20.94690 -19.16056 -18.65878 -18.61563 -18.31890 -17.87392 -17.23703 -17.18499 -16.83959 -16.65849 -16.42878 -16.25697 -16.17264 -15.87548 -15.63405 -15.27850 -15.09193 -14.83485 -14.29556 -14.04086 -13.95316 -13.68122 -13.34043 -13.16303 -13.12930 -12.91304 -12.85156 -12.79093 -12.54317 -12.39946 -12.05846 -12.02566 -11.60228 -11.55494 -11.42226 -11.26913 -10.94940 -10.52276 -9.92731 -9.56500 -9.40490 -8.32641 -5.96411 0.16629 0.21345 1.37690 1.45999 1.58560 1.64911 1.82676 2.11090 2.34048 2.51635 2.71768 2.92180 3.14209 3.18572 3.54488 3.62045 3.83977 3.92177 4.03062 4.08797 4.21362 4.28943 4.33731 4.37306 4.38303 4.40306 4.57723 4.70716 4.75111 4.84085 4.93713 5.02827 5.06315 5.07533 5.17848 5.21511 5.31742 5.41349 5.63546 5.73829 5.97508 6.33249 7.06890 7.24515 7.49083 7.87286 8.70543 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.004778 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.888918 B = 5859.057527 C = 6809.203575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.495 3.505 4 O -0.548 6.548 5 C 0.158 3.842 6 N -0.443 5.443 7 C -0.334 4.334 8 H 0.115 0.885 9 C -0.010 4.010 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.254 1.254 13 H -0.274 1.274 14 H -0.291 1.291 15 C 0.488 3.512 16 O -0.605 6.605 17 C -0.164 4.164 18 H 0.132 0.868 19 C -0.130 4.130 20 C -0.096 4.096 21 H 0.148 0.852 22 C -0.102 4.102 23 C 0.127 3.873 24 F -0.145 7.145 25 C -0.165 4.165 26 C -0.064 4.064 27 C -0.166 4.166 28 C 0.107 3.893 29 F -0.141 7.141 30 H 0.043 0.957 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 1.591 10.565 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.338 3.662 4 O -0.437 6.437 5 C 0.033 3.967 6 N -0.161 5.161 7 C -0.460 4.460 8 H 0.132 0.868 9 C -0.209 4.209 10 N -0.553 5.553 11 Si 0.824 3.176 12 H -0.178 1.178 13 H -0.199 1.199 14 H -0.218 1.218 15 C 0.279 3.721 16 O -0.492 6.492 17 C -0.184 4.184 18 H 0.149 0.851 19 C -0.167 4.167 20 C -0.114 4.114 21 H 0.165 0.835 22 C -0.103 4.103 23 C 0.107 3.893 24 F -0.123 7.123 25 C -0.184 4.184 26 C -0.082 4.082 27 C -0.185 4.185 28 C 0.088 3.912 29 F -0.120 7.120 30 H 0.062 0.938 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.199 1.524 10.866 11.429 hybrid contribution -0.539 0.335 -1.671 1.788 sum 2.660 1.859 9.195 9.751 Atomic orbital electron populations 1.23265 0.76405 1.04778 1.00998 1.86425 1.23918 1.33932 1.85055 1.23998 0.92517 0.80621 0.69031 1.90468 1.67448 1.37723 1.48023 1.20567 0.86994 0.85658 1.03526 1.43503 1.58046 1.08699 1.05886 1.20175 1.33521 1.08626 0.83724 0.86759 1.26089 0.94369 0.97238 1.03199 1.69711 1.34320 1.22347 1.28957 0.84751 0.77494 0.78613 0.76762 1.17791 1.19937 1.21794 1.19805 0.80740 0.88654 0.82929 1.90523 1.58319 1.68774 1.31575 1.22223 1.06742 0.92186 0.97277 0.85069 1.23057 0.92406 1.00390 1.00848 1.21005 1.00458 1.00122 0.89800 0.83492 1.19007 0.95215 0.99875 0.96234 1.17355 0.86472 0.97341 0.88106 1.91446 1.60253 1.95480 1.65133 1.21421 1.02774 1.00305 0.93910 1.21142 0.91134 0.96768 0.99134 1.21427 1.01888 0.97452 0.97746 1.17399 0.85175 0.92216 0.96434 1.91430 1.56459 1.68351 1.95719 0.93829 0.84799 0.93233 0.85362 0.90234 0.91877 0.90360 0.84935 0.82482 0.80407 0.82229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.38 -16.72 10.57 -51.42 -0.54 -17.27 16 3 C 0.49 25.52 5.91 71.23 0.42 25.94 16 4 O -0.55 -31.62 15.93 21.95 0.35 -31.27 16 5 C 0.16 7.97 5.29 85.63 0.45 8.42 16 6 N -0.44 -22.87 2.11 -639.60 -1.35 -24.22 16 7 C -0.33 -16.89 9.25 84.04 0.78 -16.12 16 8 H 0.11 5.37 5.81 -2.91 -0.02 5.35 16 9 C -0.01 -0.50 5.26 84.93 0.45 -0.06 16 10 N -0.91 -47.70 8.26 21.66 0.18 -47.52 16 11 Si 1.00 39.96 29.56 68.60 2.03 41.99 16 12 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.49 24.00 7.33 87.66 0.64 24.64 16 16 O -0.61 -30.85 12.73 -3.09 -0.04 -30.89 16 17 C -0.16 -6.68 5.49 -11.54 -0.06 -6.74 16 18 H 0.13 5.06 6.20 -2.38 -0.01 5.04 16 19 C -0.13 -4.67 8.91 30.60 0.27 -4.40 16 20 C -0.10 -3.30 5.49 -11.54 -0.06 -3.37 16 21 H 0.15 4.13 8.14 -2.39 -0.02 4.11 16 22 C -0.10 -3.63 3.35 -19.78 -0.07 -3.69 16 23 C 0.13 4.38 5.89 22.37 0.13 4.51 16 24 F -0.14 -5.34 16.80 44.97 0.76 -4.59 16 25 C -0.17 -4.54 10.03 22.32 0.22 -4.32 16 26 C -0.06 -1.48 10.04 22.26 0.22 -1.25 16 27 C -0.17 -4.43 10.03 22.32 0.22 -4.21 16 28 C 0.11 3.60 7.02 22.37 0.16 3.75 16 29 F -0.14 -4.86 14.52 44.97 0.65 -4.20 16 30 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.13 3.32 8.14 -2.38 -0.02 3.30 16 32 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.13 6.53 6.21 -2.39 -0.01 6.51 16 34 H 0.08 3.85 7.36 -2.39 -0.02 3.83 16 35 H 0.27 13.57 8.32 -92.71 -0.77 12.80 16 36 H 0.08 3.24 6.56 -2.39 -0.02 3.22 16 37 H 0.13 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.02 346.96 8.11 -61.91 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.10 Total: 30.37 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 4.98 Total: 25.68 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -1.17 Total: -71.74 kcal Atomic # 8 Polarization: -79.19 SS G_CDS: -0.23 Total: -79.43 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.41 Total: -8.79 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -70.02 8.11 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120601887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.002 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds