Wall clock time and date at job start Tue Mar 31 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34236 * 116.99795 * 2 1 4 4 O 1.20824 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99860 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47493 * 179.97438 * 5 3 2 7 7 C 1.37093 * 119.99947 * 264.07449 * 6 5 3 8 8 H 1.08003 * 120.00093 * 197.00551 * 7 6 5 9 9 C 1.38948 * 120.00206 * 17.00423 * 7 6 5 10 10 N 1.31415 * 119.99648 * 20.40031 * 9 7 6 11 11 Si 1.86801 * 120.00076 * 200.39736 * 9 7 6 12 12 H 1.48496 * 109.47170 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47144 * 120.00176 * 11 9 7 14 14 H 1.48502 * 109.46993 * 239.99995 * 11 9 7 15 15 C 1.34775 * 119.99870 * 84.06308 * 6 5 3 16 16 O 1.21292 * 120.00208 * 0.02562 * 15 6 5 17 17 C 1.50700 * 119.99802 * 180.02562 * 15 6 5 18 18 H 1.09004 * 115.55232 * 34.33972 * 17 15 6 19 19 C 1.52997 * 117.50023 * 248.62497 * 17 15 6 20 20 C 1.52999 * 60.00169 * 252.51235 * 19 17 15 21 21 H 1.08998 * 117.51656 * 107.48250 * 20 19 17 22 22 C 1.50705 * 117.49924 * 252.50800 * 20 19 17 23 23 C 1.38256 * 119.99869 * 8.88008 * 22 20 19 24 24 C 1.38218 * 120.06750 * 180.25240 * 23 22 20 25 25 C 1.38250 * 120.07093 * 359.48955 * 24 23 22 26 26 C 1.38374 * 120.00232 * 0.25686 * 25 24 23 27 27 F 1.35089 * 120.03815 * 180.02562 * 26 25 24 28 28 C 1.38369 * 119.99681 * 188.62239 * 22 20 19 29 29 F 1.35092 * 120.03806 * 359.97438 * 28 22 20 30 30 H 1.09001 * 109.46649 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47329 * 300.00361 * 1 2 3 32 32 H 1.09000 * 109.46877 * 60.00308 * 1 2 3 33 33 H 1.08999 * 109.47330 * 59.99258 * 5 3 2 34 34 H 1.09010 * 109.46799 * 299.99573 * 5 3 2 35 35 H 0.97004 * 119.99526 * 179.97438 * 10 9 7 36 36 H 1.09008 * 117.49646 * 145.02292 * 19 17 15 37 37 H 1.08994 * 117.50176 * 0.02562 * 19 17 15 38 38 H 1.07994 * 119.96806 * 359.97438 * 23 22 20 39 39 H 1.07996 * 119.96082 * 179.76327 * 24 23 22 40 40 H 1.07997 * 120.00389 * 180.23045 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9818 2.6798 -0.0011 7 6 4.2932 3.3020 -1.1823 8 1 4.8524 4.2260 -1.1748 9 6 3.8896 2.7441 -2.3891 10 7 2.9008 1.8788 -2.4147 11 14 4.7523 3.2239 -3.9749 12 1 5.8235 4.2083 -3.6774 13 1 5.3491 2.0156 -4.5989 14 1 3.7697 3.8295 -4.9093 15 6 4.0575 3.3605 1.1597 16 8 3.7822 2.8099 2.2047 17 6 4.4843 4.8058 1.1591 18 1 4.1683 5.3890 0.2941 19 6 5.8412 5.1420 1.7809 20 6 4.5506 5.5233 2.5088 21 1 4.2853 4.9501 3.3971 22 6 4.1747 6.9824 2.5404 23 6 4.8788 7.8944 1.7762 24 6 4.5385 9.2336 1.8081 25 6 3.4868 9.6626 2.5962 26 6 2.7768 8.7516 3.3583 27 9 1.7486 9.1699 4.1283 28 6 3.1215 7.4084 3.3303 29 9 2.4295 6.5171 4.0729 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.9557 0.7809 -0.8907 34 1 3.9564 0.7807 0.8893 35 1 2.6188 1.4895 -3.2573 36 1 6.4184 5.9464 1.3248 37 1 6.4254 4.3178 2.1900 38 1 5.6983 7.5607 1.1570 39 1 5.0921 9.9451 1.2134 40 1 3.2195 10.7087 2.6175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121782149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:18 Heat of formation + Delta-G solvation = -141.235069 kcal Electronic energy + Delta-G solvation = -29547.593174 eV Core-core repulsion = 24965.345615 eV Total energy + Delta-G solvation = -4582.247559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.37695 -48.43407 -39.82567 -39.26691 -38.34372 -36.22384 -35.17441 -34.59468 -31.62808 -30.73562 -30.28634 -28.65867 -26.42741 -25.09467 -24.28830 -23.13994 -22.50712 -20.73518 -20.06054 -19.15222 -17.94878 -17.50877 -16.92334 -16.83232 -16.56725 -16.25851 -16.20930 -15.46742 -15.27015 -15.05728 -14.85474 -14.65315 -14.42972 -14.29612 -14.17080 -13.57255 -13.20601 -12.91977 -12.52852 -12.50103 -12.34699 -12.28387 -12.02475 -11.66289 -11.45577 -11.33994 -11.27033 -11.10665 -10.84992 -10.65098 -10.51650 -10.31905 -10.06268 -9.81634 -9.62303 -9.04930 -8.81577 -8.71566 -8.55736 -8.01572 -6.55849 -4.04652 0.89908 0.92181 3.00274 3.14401 3.18215 3.20106 3.42586 3.67900 3.71870 3.85312 4.02850 4.33466 4.37451 4.39532 4.61911 4.70357 4.87397 4.96872 5.02620 5.23408 5.34952 5.45797 5.70612 5.74052 5.76790 5.79023 5.87453 5.95078 5.96688 6.05816 6.07646 6.15607 6.25059 6.36473 6.45803 6.57959 6.63462 6.72261 7.28940 7.43686 7.55222 8.17974 8.91930 9.09820 9.30187 9.70566 10.51676 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003776 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.644169 B = 7414.240681 C = 8683.865950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.498 6.498 5 C 0.157 3.843 6 N -0.423 5.423 7 C -0.333 4.333 8 H 0.106 0.894 9 C 0.036 3.964 10 N -0.868 5.868 11 Si 0.926 3.074 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.282 1.282 15 C 0.495 3.505 16 O -0.598 6.598 17 C -0.127 4.127 18 H 0.126 0.874 19 C -0.144 4.144 20 C -0.110 4.110 21 H 0.128 0.872 22 C -0.044 4.044 23 C -0.104 4.104 24 C -0.098 4.098 25 C -0.137 4.137 26 C 0.066 3.934 27 F -0.132 7.132 28 C 0.075 3.925 29 F -0.122 7.122 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 8.470 3.860 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.325 3.675 4 O -0.383 6.383 5 C 0.031 3.969 6 N -0.140 5.140 7 C -0.460 4.460 8 H 0.124 0.876 9 C -0.169 4.169 10 N -0.506 5.506 11 Si 0.752 3.248 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.208 1.208 15 C 0.284 3.716 16 O -0.484 6.484 17 C -0.147 4.147 18 H 0.144 0.856 19 C -0.181 4.181 20 C -0.129 4.129 21 H 0.146 0.854 22 C -0.045 4.045 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.156 4.156 26 C 0.046 3.954 27 F -0.110 7.110 28 C 0.055 3.945 29 F -0.101 7.101 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.066 8.352 4.256 10.218 hybrid contribution -0.570 0.218 -0.876 1.068 sum 3.496 8.571 3.379 9.854 Atomic orbital electron populations 1.22935 0.78685 1.01804 1.01664 1.86453 1.21700 1.35469 1.85723 1.23930 0.92272 0.80596 0.70679 1.90524 1.66471 1.36368 1.44921 1.20491 0.87309 0.85449 1.03628 1.43307 1.56669 1.08010 1.06056 1.19694 1.34413 1.09827 0.82098 0.87617 1.25253 0.94804 0.97073 0.99730 1.69852 1.22721 1.30101 1.27926 0.85888 0.79247 0.78609 0.81042 1.19115 1.20404 1.20841 1.19146 0.82098 0.86543 0.83793 1.90550 1.55724 1.69979 1.32178 1.22176 1.00864 0.95837 0.95861 0.85649 1.23046 0.89738 1.03092 1.02271 1.20954 1.02964 0.90379 0.98576 0.85403 1.19223 0.93900 0.95683 0.95679 1.21104 1.00131 0.92323 0.98627 1.21023 0.96435 0.95925 0.98227 1.21018 0.96974 0.99714 0.97921 1.17669 0.89755 0.91402 0.96610 1.91510 1.56082 1.90379 1.73055 1.17504 0.94729 0.85475 0.96835 1.91548 1.77525 1.66867 1.74118 0.89590 0.93133 0.92622 0.85791 0.90004 0.91682 0.88007 0.87830 0.83919 0.84275 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.23 10.57 -39.27 -0.41 -8.65 16 3 C 0.48 12.15 6.12 36.00 0.22 12.37 16 4 O -0.50 -14.10 15.77 -18.75 -0.30 -14.39 16 5 C 0.16 3.74 5.14 -5.20 -0.03 3.72 16 6 N -0.42 -10.42 2.18 -116.10 -0.25 -10.67 16 7 C -0.33 -8.04 9.02 -14.94 -0.13 -8.18 16 8 H 0.11 2.36 6.41 -52.48 -0.34 2.03 16 9 C 0.04 0.87 4.90 -17.47 -0.09 0.79 16 10 N -0.87 -22.09 9.22 55.50 0.51 -21.58 16 11 Si 0.93 18.55 29.60 -169.99 -5.03 13.51 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.49 11.89 7.21 -10.99 -0.08 11.81 16 16 O -0.60 -15.74 15.94 5.55 0.09 -15.65 16 17 C -0.13 -2.44 4.60 -91.77 -0.42 -2.87 16 18 H 0.13 2.42 7.09 -51.93 -0.37 2.05 16 19 C -0.14 -2.14 9.56 -26.73 -0.26 -2.39 16 20 C -0.11 -1.87 5.31 -91.77 -0.49 -2.36 16 21 H 0.13 2.44 7.39 -51.93 -0.38 2.05 16 22 C -0.04 -0.65 5.62 -104.57 -0.59 -1.24 16 23 C -0.10 -1.20 9.29 -39.58 -0.37 -1.57 16 24 C -0.10 -0.94 10.04 -39.58 -0.40 -1.34 16 25 C -0.14 -1.46 10.02 -39.53 -0.40 -1.86 16 26 C 0.07 0.91 7.31 -39.36 -0.29 0.63 16 27 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 28 C 0.07 1.19 7.25 -39.36 -0.29 0.91 16 29 F -0.12 -2.24 16.53 2.25 0.04 -2.20 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.12 2.91 6.36 -51.93 -0.33 2.58 16 34 H 0.08 1.82 7.61 -51.92 -0.40 1.43 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.10 1.17 6.18 -51.92 -0.32 0.84 16 37 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.14 1.37 6.03 -52.49 -0.32 1.05 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.18 354.29 -6.63 -38.81 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.12 Total: 7.10 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -2.53 Total: 10.26 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.26 Total: -32.25 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.62 Total: -38.69 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.18 -6.63 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121782149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.425 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds