Wall clock time and date at job start Tue Mar 31 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34236 * 116.99795 * 2 1 4 4 O 1.20824 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99860 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47493 * 179.97438 * 5 3 2 7 7 C 1.37093 * 119.99947 * 264.07449 * 6 5 3 8 8 H 1.08003 * 120.00093 * 197.00551 * 7 6 5 9 9 C 1.38948 * 120.00206 * 17.00423 * 7 6 5 10 10 N 1.31415 * 119.99648 * 20.40031 * 9 7 6 11 11 Si 1.86801 * 120.00076 * 200.39736 * 9 7 6 12 12 H 1.48496 * 109.47170 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47144 * 120.00176 * 11 9 7 14 14 H 1.48502 * 109.46993 * 239.99995 * 11 9 7 15 15 C 1.34775 * 119.99870 * 84.06308 * 6 5 3 16 16 O 1.21292 * 120.00208 * 0.02562 * 15 6 5 17 17 C 1.50700 * 119.99802 * 180.02562 * 15 6 5 18 18 H 1.09004 * 115.55232 * 34.33972 * 17 15 6 19 19 C 1.52997 * 117.50023 * 248.62497 * 17 15 6 20 20 C 1.52999 * 60.00169 * 252.51235 * 19 17 15 21 21 H 1.08998 * 117.51656 * 107.48250 * 20 19 17 22 22 C 1.50705 * 117.49924 * 252.50800 * 20 19 17 23 23 C 1.38256 * 119.99869 * 8.88008 * 22 20 19 24 24 C 1.38218 * 120.06750 * 180.25240 * 23 22 20 25 25 C 1.38250 * 120.07093 * 359.48955 * 24 23 22 26 26 C 1.38374 * 120.00232 * 0.25686 * 25 24 23 27 27 F 1.35089 * 120.03815 * 180.02562 * 26 25 24 28 28 C 1.38369 * 119.99681 * 188.62239 * 22 20 19 29 29 F 1.35092 * 120.03806 * 359.97438 * 28 22 20 30 30 H 1.09001 * 109.46649 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47329 * 300.00361 * 1 2 3 32 32 H 1.09000 * 109.46877 * 60.00308 * 1 2 3 33 33 H 1.08999 * 109.47330 * 59.99258 * 5 3 2 34 34 H 1.09010 * 109.46799 * 299.99573 * 5 3 2 35 35 H 0.97004 * 119.99526 * 179.97438 * 10 9 7 36 36 H 1.09008 * 117.49646 * 145.02292 * 19 17 15 37 37 H 1.08994 * 117.50176 * 0.02562 * 19 17 15 38 38 H 1.07994 * 119.96806 * 359.97438 * 23 22 20 39 39 H 1.07996 * 119.96082 * 179.76327 * 24 23 22 40 40 H 1.07997 * 120.00389 * 180.23045 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9818 2.6798 -0.0011 7 6 4.2932 3.3020 -1.1823 8 1 4.8524 4.2260 -1.1748 9 6 3.8896 2.7441 -2.3891 10 7 2.9008 1.8788 -2.4147 11 14 4.7523 3.2239 -3.9749 12 1 5.8235 4.2083 -3.6774 13 1 5.3491 2.0156 -4.5989 14 1 3.7697 3.8295 -4.9093 15 6 4.0575 3.3605 1.1597 16 8 3.7822 2.8099 2.2047 17 6 4.4843 4.8058 1.1591 18 1 4.1683 5.3890 0.2941 19 6 5.8412 5.1420 1.7809 20 6 4.5506 5.5233 2.5088 21 1 4.2853 4.9501 3.3971 22 6 4.1747 6.9824 2.5404 23 6 4.8788 7.8944 1.7762 24 6 4.5385 9.2336 1.8081 25 6 3.4868 9.6626 2.5962 26 6 2.7768 8.7516 3.3583 27 9 1.7486 9.1699 4.1283 28 6 3.1215 7.4084 3.3303 29 9 2.4295 6.5171 4.0729 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.9557 0.7809 -0.8907 34 1 3.9564 0.7807 0.8893 35 1 2.6188 1.4895 -3.2573 36 1 6.4184 5.9464 1.3248 37 1 6.4254 4.3178 2.1900 38 1 5.6983 7.5607 1.1570 39 1 5.0921 9.9451 1.2134 40 1 3.2195 10.7087 2.6175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121782149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:17 Heat of formation + Delta-G solvation = -159.050022 kcal Electronic energy + Delta-G solvation = -29548.365688 eV Core-core repulsion = 24965.345615 eV Total energy + Delta-G solvation = -4583.020073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.52783 -49.62014 -41.49185 -40.78169 -39.83576 -37.71852 -36.94413 -36.49447 -33.49392 -31.79371 -31.26255 -30.41889 -28.02924 -26.88774 -25.42188 -24.55658 -23.61912 -22.12882 -21.65971 -20.93976 -19.10532 -18.99335 -18.49779 -18.37178 -18.01271 -17.69868 -17.37018 -17.29493 -16.99810 -16.33635 -16.24713 -16.04565 -15.98026 -15.52380 -15.44834 -15.14429 -14.82846 -14.31108 -14.13620 -14.02016 -13.64502 -13.43962 -13.35469 -13.13148 -13.09101 -12.90117 -12.61737 -12.57010 -12.39521 -12.16642 -11.99483 -11.65564 -11.62071 -11.53792 -11.44933 -10.96759 -10.54382 -9.90979 -9.75977 -9.70481 -8.37314 -5.93017 -0.07153 -0.04705 1.38927 1.52474 1.62566 1.66561 1.74110 2.14596 2.30277 2.37584 2.68182 2.83260 2.98629 3.18218 3.34034 3.49883 3.71824 3.85740 3.93978 4.00364 4.15171 4.21458 4.23701 4.30494 4.36704 4.43001 4.53740 4.65440 4.70421 4.77545 4.83233 4.87731 4.99730 5.02660 5.13479 5.24892 5.37093 5.45910 5.59312 5.69721 5.78796 6.33401 7.06785 7.16979 7.46086 7.86737 8.70670 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003776 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.644169 B = 7414.240681 C = 8683.865950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.540 6.540 5 C 0.153 3.847 6 N -0.433 5.433 7 C -0.348 4.348 8 H 0.124 0.876 9 C -0.008 4.008 10 N -0.901 5.901 11 Si 0.999 3.001 12 H -0.245 1.245 13 H -0.277 1.277 14 H -0.292 1.292 15 C 0.479 3.521 16 O -0.636 6.636 17 C -0.155 4.155 18 H 0.127 0.873 19 C -0.104 4.104 20 C -0.109 4.109 21 H 0.092 0.908 22 C -0.062 4.062 23 C -0.096 4.096 24 C -0.077 4.077 25 C -0.122 4.122 26 C 0.047 3.953 27 F -0.143 7.143 28 C 0.032 3.968 29 F -0.152 7.152 30 H 0.136 0.864 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.271 0.729 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.172 0.828 39 H 0.189 0.811 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 11.106 1.953 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.428 6.428 5 C 0.027 3.973 6 N -0.150 5.150 7 C -0.474 4.474 8 H 0.142 0.858 9 C -0.210 4.210 10 N -0.540 5.540 11 Si 0.822 3.178 12 H -0.168 1.168 13 H -0.203 1.203 14 H -0.219 1.219 15 C 0.270 3.730 16 O -0.525 6.525 17 C -0.175 4.175 18 H 0.145 0.855 19 C -0.141 4.141 20 C -0.128 4.128 21 H 0.110 0.890 22 C -0.063 4.063 23 C -0.114 4.114 24 C -0.094 4.094 25 C -0.141 4.141 26 C 0.027 3.973 27 F -0.122 7.122 28 C 0.012 3.988 29 F -0.131 7.131 30 H 0.154 0.846 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.189 0.811 39 H 0.206 0.794 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.497 10.975 2.356 12.970 hybrid contribution -1.405 -0.619 -0.245 1.555 sum 5.092 10.356 2.111 11.732 Atomic orbital electron populations 1.23295 0.76236 1.04927 1.01088 1.86424 1.24090 1.33774 1.85031 1.24156 0.92767 0.80756 0.69480 1.90488 1.67421 1.37802 1.47084 1.20561 0.86915 0.85990 1.03793 1.43587 1.56547 1.08226 1.06671 1.20184 1.34581 1.10633 0.82038 0.85850 1.26212 0.94974 0.96933 1.02851 1.69971 1.24100 1.31439 1.28496 0.84786 0.78163 0.78561 0.76272 1.16838 1.20281 1.21883 1.20029 0.81450 0.88420 0.83095 1.90505 1.57314 1.71350 1.33350 1.22042 1.05241 0.92846 0.97398 0.85528 1.23259 0.88079 1.03642 0.99080 1.20783 1.04646 0.91472 0.95929 0.89009 1.19209 0.94806 0.94921 0.97334 1.21486 0.99886 0.92629 0.97390 1.21588 0.95261 0.95753 0.96840 1.21514 0.95953 1.00646 0.95967 1.18015 0.90359 0.91219 0.97679 1.91474 1.56772 1.90320 1.73606 1.18041 0.96098 0.86267 0.98424 1.91457 1.78418 1.68069 1.75150 0.84579 0.93395 0.93575 0.85703 0.89385 0.91908 0.83217 0.88007 0.81109 0.79385 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.82 10.57 -51.48 -0.54 -17.36 16 3 C 0.49 25.29 6.12 71.23 0.44 25.73 16 4 O -0.54 -31.92 15.77 21.97 0.35 -31.57 16 5 C 0.15 7.59 5.14 85.63 0.44 8.03 16 6 N -0.43 -21.92 2.18 -639.61 -1.39 -23.32 16 7 C -0.35 -16.75 9.02 84.04 0.76 -15.99 16 8 H 0.12 5.33 6.41 -2.91 -0.02 5.31 16 9 C -0.01 -0.40 4.90 84.93 0.42 0.01 16 10 N -0.90 -46.60 9.22 21.66 0.20 -46.40 16 11 Si 1.00 37.14 29.60 68.60 2.03 39.17 16 12 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 13 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 14 H -0.29 -11.27 7.11 99.48 0.71 -10.57 16 15 C 0.48 23.87 7.21 87.66 0.63 24.50 16 16 O -0.64 -35.44 15.94 -3.07 -0.05 -35.48 16 17 C -0.15 -5.99 4.60 -11.54 -0.05 -6.04 16 18 H 0.13 4.81 7.09 -2.38 -0.02 4.79 16 19 C -0.10 -2.87 9.56 30.59 0.29 -2.57 16 20 C -0.11 -3.78 5.31 -11.54 -0.06 -3.84 16 21 H 0.09 3.80 7.39 -2.39 -0.02 3.78 16 22 C -0.06 -1.80 5.62 -19.83 -0.11 -1.91 16 23 C -0.10 -1.83 9.29 22.27 0.21 -1.63 16 24 C -0.08 -1.06 10.04 22.27 0.22 -0.84 16 25 C -0.12 -2.14 10.02 22.31 0.22 -1.91 16 26 C 0.05 1.28 7.31 22.41 0.16 1.45 16 27 F -0.14 -4.23 17.18 44.97 0.77 -3.45 16 28 C 0.03 1.04 7.25 22.41 0.16 1.20 16 29 F -0.15 -6.11 16.53 44.97 0.74 -5.37 16 30 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.13 6.06 6.36 -2.39 -0.02 6.05 16 34 H 0.09 4.13 7.61 -2.38 -0.02 4.11 16 35 H 0.27 13.38 8.31 -92.70 -0.77 12.61 16 36 H 0.15 2.65 6.18 -2.38 -0.01 2.64 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.17 2.23 6.03 -2.91 -0.02 2.22 16 39 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.83 354.29 8.14 -68.69 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 1.11 Total: 26.35 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 4.93 Total: 28.74 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.19 Total: -69.71 kcal Atomic # 8 Polarization: -84.17 SS G_CDS: -0.25 Total: -84.42 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 1.52 Total: -8.82 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -76.83 8.14 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121782149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.356 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds