Wall clock time and date at job start Tue Mar 31 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00479 * 2 1 4 4 O 1.20830 * 119.99347 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00561 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47329 * 179.97438 * 5 3 2 7 7 C 1.37101 * 119.99928 * 264.07641 * 6 5 3 8 8 H 1.07994 * 119.99872 * 196.80639 * 7 6 5 9 9 C 1.38948 * 119.99952 * 16.80063 * 7 6 5 10 10 N 1.31413 * 119.99753 * 20.61277 * 9 7 6 11 11 Si 1.86798 * 120.00111 * 200.60724 * 9 7 6 12 12 H 1.48496 * 109.47241 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.47341 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47129 * 300.00133 * 11 9 7 15 15 C 1.34773 * 120.00075 * 84.07975 * 6 5 3 16 16 O 1.21292 * 119.99933 * 359.97438 * 15 6 5 17 17 C 1.50702 * 120.00021 * 180.02562 * 15 6 5 18 18 H 1.08999 * 115.56008 * 325.68303 * 17 15 6 19 19 C 1.53001 * 117.49963 * 111.37446 * 17 15 6 20 20 C 1.52998 * 117.49843 * 179.97438 * 17 15 6 21 21 H 1.08997 * 117.52159 * 145.02820 * 20 17 15 22 22 C 1.50699 * 117.49911 * 359.97438 * 20 17 15 23 23 C 1.38259 * 119.99946 * 300.23809 * 22 20 17 24 24 C 1.38215 * 120.06745 * 180.25681 * 23 22 20 25 25 C 1.38248 * 120.07454 * 359.48878 * 24 23 22 26 26 C 1.38371 * 120.00000 * 0.25915 * 25 24 23 27 27 F 1.35101 * 120.04000 * 180.02562 * 26 25 24 28 28 C 1.38369 * 120.00045 * 119.98920 * 22 20 17 29 29 F 1.35095 * 120.03694 * 0.02562 * 28 22 20 30 30 H 1.08993 * 109.47137 * 300.00439 * 1 2 3 31 31 H 1.09002 * 109.46855 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47336 * 59.99781 * 5 3 2 34 34 H 1.09000 * 109.47066 * 300.00281 * 5 3 2 35 35 H 0.97009 * 119.99758 * 179.97438 * 10 9 7 36 36 H 1.09005 * 117.49665 * 359.97438 * 19 17 15 37 37 H 1.09001 * 117.49470 * 214.98148 * 19 17 15 38 38 H 1.07996 * 119.96563 * 0.02562 * 23 22 20 39 39 H 1.08001 * 119.96166 * 179.77244 * 24 23 22 40 40 H 1.07995 * 120.00655 * 180.23396 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2941 3.3015 -1.1814 8 1 4.8504 4.2271 -1.1737 9 6 3.8950 2.7408 -2.3885 10 7 2.9062 1.8756 -2.4159 11 14 4.7638 3.2169 -3.9721 12 1 6.2032 2.8656 -3.8719 13 1 4.1534 2.4851 -5.1110 14 1 4.6253 4.6789 -4.1925 15 6 4.0569 3.3608 1.1604 16 8 3.7801 2.8108 2.2054 17 6 4.4836 4.8061 1.1595 18 1 5.2261 5.0768 0.4089 19 6 3.4291 5.8544 1.5203 20 6 4.5486 5.5243 2.5089 21 1 5.3338 6.2676 2.6466 22 6 4.1804 4.7324 3.7371 23 6 2.9193 4.1768 3.8490 24 6 2.5783 3.4548 4.9771 25 6 3.5009 3.2776 5.9913 26 6 4.7655 3.8279 5.8801 27 9 5.6679 3.6548 6.8706 28 6 5.1060 4.5570 4.7505 29 9 6.3400 5.0958 4.6399 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9565 0.7805 -0.8891 34 1 3.9557 0.7809 0.8908 35 1 2.6274 1.4844 -3.2587 36 1 2.4265 5.4986 1.7578 37 1 3.4779 6.8146 1.0069 38 1 2.1987 4.3103 3.0557 39 1 1.5915 3.0246 5.0643 40 1 3.2345 2.7100 6.8706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121782299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:21 Heat of formation + Delta-G solvation = -129.571341 kcal Electronic energy + Delta-G solvation = -30486.838004 eV Core-core repulsion = 25905.096223 eV Total energy + Delta-G solvation = -4581.741782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.08311 -48.16764 -39.95101 -39.20344 -37.97904 -36.14369 -35.16404 -34.61671 -31.68146 -30.36869 -29.82658 -28.69383 -26.48469 -25.06520 -24.04447 -23.00374 -22.32524 -20.63897 -20.06170 -19.19277 -17.86901 -17.12016 -16.91492 -16.62641 -16.45285 -16.05574 -15.90739 -15.50585 -15.31195 -14.74031 -14.64332 -14.55767 -14.29932 -14.18905 -13.97665 -13.48365 -13.28591 -12.70375 -12.53577 -12.43982 -12.35858 -12.08957 -11.84013 -11.59724 -11.36754 -11.34674 -11.11612 -10.85838 -10.83930 -10.67094 -10.53065 -10.22834 -9.99815 -9.88127 -9.63351 -9.08775 -8.91866 -8.32060 -8.02474 -7.78751 -6.58426 -4.06989 1.37354 1.43267 3.01848 3.13763 3.14804 3.29790 3.59316 3.66344 3.93069 4.01533 4.11594 4.40594 4.53857 4.69844 4.82748 4.92389 5.10333 5.22225 5.37723 5.42446 5.48846 5.54360 5.64543 5.71762 5.88949 5.91146 6.02950 6.09668 6.15912 6.18370 6.26151 6.36329 6.37768 6.46499 6.59785 6.61289 6.79543 7.17833 7.26681 7.38850 7.50713 8.14224 8.89306 9.03218 9.26842 9.66851 10.48487 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.004369 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.684306 B = 6407.395554 C = 7811.890690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.487 3.513 4 O -0.500 6.500 5 C 0.156 3.844 6 N -0.419 5.419 7 C -0.335 4.335 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.869 5.869 11 Si 0.925 3.075 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.491 3.509 16 O -0.586 6.586 17 C -0.134 4.134 18 H 0.124 0.876 19 C -0.141 4.141 20 C -0.110 4.110 21 H 0.117 0.883 22 C -0.034 4.034 23 C -0.019 4.019 24 C -0.113 4.113 25 C -0.131 4.131 26 C 0.046 3.954 27 F -0.141 7.141 28 C 0.067 3.933 29 F -0.136 7.136 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.274 0.726 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 1.855 7.118 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.385 6.385 5 C 0.031 3.969 6 N -0.136 5.136 7 C -0.462 4.462 8 H 0.122 0.878 9 C -0.166 4.166 10 N -0.507 5.507 11 Si 0.751 3.249 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.281 3.719 16 O -0.472 6.472 17 C -0.155 4.155 18 H 0.142 0.858 19 C -0.178 4.178 20 C -0.129 4.129 21 H 0.135 0.865 22 C -0.035 4.035 23 C -0.037 4.037 24 C -0.131 4.131 25 C -0.150 4.150 26 C 0.026 3.974 27 F -0.119 7.119 28 C 0.047 3.953 29 F -0.115 7.115 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.575 1.766 7.464 7.830 hybrid contribution 0.483 0.178 -1.153 1.262 sum -1.092 1.944 6.311 6.694 Atomic orbital electron populations 1.22927 0.78676 1.01829 1.01591 1.86461 1.21692 1.35511 1.85663 1.23904 0.92203 0.80554 0.70529 1.90503 1.66487 1.36339 1.45161 1.20477 0.87309 0.85499 1.03644 1.43362 1.56262 1.07897 1.06118 1.19612 1.34548 1.09849 0.82190 0.87753 1.25211 0.94809 0.96978 0.99651 1.69821 1.22748 1.29977 1.28120 0.86017 0.79557 0.78858 0.80423 1.19711 1.20882 1.19776 1.19231 0.82197 0.86744 0.83751 1.90566 1.55832 1.69644 1.31198 1.22141 1.03273 0.93031 0.97063 0.85786 1.22997 0.94883 0.99231 1.00689 1.20941 1.02606 1.01407 0.87929 0.86468 1.18768 0.93145 0.98777 0.92822 1.20756 0.94992 0.92518 0.95444 1.20837 0.99530 0.99510 0.93220 1.20850 0.91490 1.01568 1.01056 1.17458 0.88988 1.04261 0.86740 1.91458 1.66648 1.94240 1.59592 1.17309 0.81489 1.00835 0.95667 1.91448 1.39611 1.84123 1.96277 0.93178 0.92619 0.89622 0.85927 0.89987 0.91586 0.88050 0.87830 0.85065 0.85237 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.38 -7.80 10.57 -39.27 -0.41 -8.21 16 3 C 0.49 11.46 6.13 36.00 0.22 11.68 16 4 O -0.50 -13.04 15.78 -18.75 -0.30 -13.33 16 5 C 0.16 3.58 5.14 -5.20 -0.03 3.55 16 6 N -0.42 -9.88 2.18 -116.10 -0.25 -10.14 16 7 C -0.33 -7.93 9.18 -14.93 -0.14 -8.07 16 8 H 0.10 2.31 6.03 -52.49 -0.32 2.00 16 9 C 0.04 0.91 4.90 -17.47 -0.09 0.82 16 10 N -0.87 -21.56 9.23 55.50 0.51 -21.05 16 11 Si 0.93 18.50 29.60 -169.99 -5.03 13.47 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 15 C 0.49 10.96 7.06 -10.99 -0.08 10.88 16 16 O -0.59 -13.53 11.36 5.55 0.06 -13.47 16 17 C -0.13 -2.50 5.23 -91.77 -0.48 -2.98 16 18 H 0.12 2.18 6.64 -51.93 -0.34 1.84 16 19 C -0.14 -2.24 9.57 -26.75 -0.26 -2.49 16 20 C -0.11 -1.81 5.79 -91.80 -0.53 -2.34 16 21 H 0.12 1.71 7.87 -51.93 -0.41 1.30 16 22 C -0.03 -0.60 4.38 -104.57 -0.46 -1.05 16 23 C -0.02 -0.32 6.16 -39.58 -0.24 -0.57 16 24 C -0.11 -1.70 10.04 -39.59 -0.40 -2.10 16 25 C -0.13 -1.92 10.02 -39.53 -0.40 -2.31 16 26 C 0.05 0.76 7.31 -39.36 -0.29 0.47 16 27 F -0.14 -2.34 17.18 2.25 0.04 -2.30 16 28 C 0.07 1.19 7.25 -39.36 -0.29 0.90 16 29 F -0.14 -2.42 16.53 2.25 0.04 -2.38 16 30 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.12 2.82 6.35 -51.93 -0.33 2.49 16 34 H 0.08 1.77 7.61 -51.93 -0.40 1.37 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.10 1.70 6.18 -51.93 -0.32 1.38 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.13 2.34 5.76 -52.49 -0.30 2.03 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -29.20 345.87 -6.60 -35.80 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.09 Total: 8.21 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.38 Total: 8.20 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.26 Total: -31.19 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.65 Total: -35.01 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.08 Total: -4.68 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.20 -6.60 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121782299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.775 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds