Wall clock time and date at job start Tue Mar 31 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00479 * 2 1 4 4 O 1.20830 * 119.99347 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00561 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47329 * 179.97438 * 5 3 2 7 7 C 1.37101 * 119.99928 * 264.07641 * 6 5 3 8 8 H 1.07994 * 119.99872 * 196.80639 * 7 6 5 9 9 C 1.38948 * 119.99952 * 16.80063 * 7 6 5 10 10 N 1.31413 * 119.99753 * 20.61277 * 9 7 6 11 11 Si 1.86798 * 120.00111 * 200.60724 * 9 7 6 12 12 H 1.48496 * 109.47241 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.47341 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47129 * 300.00133 * 11 9 7 15 15 C 1.34773 * 120.00075 * 84.07975 * 6 5 3 16 16 O 1.21292 * 119.99933 * 359.97438 * 15 6 5 17 17 C 1.50702 * 120.00021 * 180.02562 * 15 6 5 18 18 H 1.08999 * 115.56008 * 325.68303 * 17 15 6 19 19 C 1.53001 * 117.49963 * 111.37446 * 17 15 6 20 20 C 1.52998 * 117.49843 * 179.97438 * 17 15 6 21 21 H 1.08997 * 117.52159 * 145.02820 * 20 17 15 22 22 C 1.50699 * 117.49911 * 359.97438 * 20 17 15 23 23 C 1.38259 * 119.99946 * 300.23809 * 22 20 17 24 24 C 1.38215 * 120.06745 * 180.25681 * 23 22 20 25 25 C 1.38248 * 120.07454 * 359.48878 * 24 23 22 26 26 C 1.38371 * 120.00000 * 0.25915 * 25 24 23 27 27 F 1.35101 * 120.04000 * 180.02562 * 26 25 24 28 28 C 1.38369 * 120.00045 * 119.98920 * 22 20 17 29 29 F 1.35095 * 120.03694 * 0.02562 * 28 22 20 30 30 H 1.08993 * 109.47137 * 300.00439 * 1 2 3 31 31 H 1.09002 * 109.46855 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47336 * 59.99781 * 5 3 2 34 34 H 1.09000 * 109.47066 * 300.00281 * 5 3 2 35 35 H 0.97009 * 119.99758 * 179.97438 * 10 9 7 36 36 H 1.09005 * 117.49665 * 359.97438 * 19 17 15 37 37 H 1.09001 * 117.49470 * 214.98148 * 19 17 15 38 38 H 1.07996 * 119.96563 * 0.02562 * 23 22 20 39 39 H 1.08001 * 119.96166 * 179.77244 * 24 23 22 40 40 H 1.07995 * 120.00655 * 180.23396 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2941 3.3015 -1.1814 8 1 4.8504 4.2271 -1.1737 9 6 3.8950 2.7408 -2.3885 10 7 2.9062 1.8756 -2.4159 11 14 4.7638 3.2169 -3.9721 12 1 6.2032 2.8656 -3.8719 13 1 4.1534 2.4851 -5.1110 14 1 4.6253 4.6789 -4.1925 15 6 4.0569 3.3608 1.1604 16 8 3.7801 2.8108 2.2054 17 6 4.4836 4.8061 1.1595 18 1 5.2261 5.0768 0.4089 19 6 3.4291 5.8544 1.5203 20 6 4.5486 5.5243 2.5089 21 1 5.3338 6.2676 2.6466 22 6 4.1804 4.7324 3.7371 23 6 2.9193 4.1768 3.8490 24 6 2.5783 3.4548 4.9771 25 6 3.5009 3.2776 5.9913 26 6 4.7655 3.8279 5.8801 27 9 5.6679 3.6548 6.8706 28 6 5.1060 4.5570 4.7505 29 9 6.3400 5.0958 4.6399 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9565 0.7805 -0.8891 34 1 3.9557 0.7809 0.8908 35 1 2.6274 1.4844 -3.2587 36 1 2.4265 5.4986 1.7578 37 1 3.4779 6.8146 1.0069 38 1 2.1987 4.3103 3.0557 39 1 1.5915 3.0246 5.0643 40 1 3.2345 2.7100 6.8706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121782299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:21 Heat of formation + Delta-G solvation = -143.227469 kcal Electronic energy + Delta-G solvation = -30487.430179 eV Core-core repulsion = 25905.096223 eV Total energy + Delta-G solvation = -4582.333956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.40354 -49.49325 -41.53770 -40.81907 -39.46592 -37.63057 -36.83768 -36.37156 -33.46071 -31.66872 -31.11673 -30.35507 -27.97389 -26.80625 -25.34634 -24.50449 -23.62798 -22.09497 -21.61752 -20.88091 -19.27217 -18.57749 -18.46899 -18.35092 -17.89626 -17.49108 -17.25661 -17.18327 -16.93130 -16.25535 -16.17162 -15.92907 -15.73831 -15.64252 -15.33971 -15.00976 -14.78967 -14.24781 -14.06082 -13.97522 -13.78694 -13.37778 -13.34561 -13.10091 -13.04033 -12.83772 -12.51208 -12.47795 -12.31784 -12.13869 -12.06946 -11.57587 -11.54185 -11.48040 -11.30401 -10.89319 -10.48679 -9.86184 -9.56862 -9.20052 -8.35405 -5.89108 0.10011 0.14465 1.43028 1.51407 1.59501 1.69145 1.81529 2.14994 2.35103 2.53133 2.75244 2.90854 3.05446 3.24826 3.41204 3.61305 3.77851 3.95785 4.02937 4.05763 4.19125 4.27855 4.31606 4.37490 4.40774 4.42752 4.60382 4.71740 4.76845 4.82314 4.87722 4.95126 4.98834 5.08327 5.13061 5.32838 5.48090 5.53174 5.66605 5.76174 5.91669 6.35177 7.10774 7.25152 7.53134 7.92826 8.71074 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.004369 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.684306 B = 6407.395554 C = 7811.890690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.379 6.379 3 C 0.489 3.511 4 O -0.533 6.533 5 C 0.155 3.845 6 N -0.435 5.435 7 C -0.348 4.348 8 H 0.116 0.884 9 C -0.002 4.002 10 N -0.897 5.897 11 Si 0.990 3.010 12 H -0.266 1.266 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.484 3.516 16 O -0.600 6.600 17 C -0.159 4.159 18 H 0.133 0.867 19 C -0.125 4.125 20 C -0.099 4.099 21 H 0.137 0.863 22 C -0.048 4.048 23 C -0.032 4.032 24 C -0.110 4.110 25 C -0.120 4.120 26 C 0.034 3.966 27 F -0.142 7.142 28 C 0.049 3.951 29 F -0.141 7.141 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.270 0.730 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 2.164 7.552 7.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.332 3.668 4 O -0.420 6.420 5 C 0.030 3.970 6 N -0.153 5.153 7 C -0.475 4.475 8 H 0.133 0.867 9 C -0.204 4.204 10 N -0.536 5.536 11 Si 0.814 3.186 12 H -0.191 1.191 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.275 3.725 16 O -0.487 6.487 17 C -0.180 4.180 18 H 0.151 0.849 19 C -0.162 4.162 20 C -0.118 4.118 21 H 0.155 0.845 22 C -0.049 4.049 23 C -0.051 4.051 24 C -0.128 4.128 25 C -0.138 4.138 26 C 0.014 3.986 27 F -0.121 7.121 28 C 0.029 3.971 29 F -0.120 7.120 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.173 0.827 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.675 2.069 7.917 8.352 hybrid contribution 0.425 0.009 -1.168 1.243 sum -1.250 2.078 6.749 7.171 Atomic orbital electron populations 1.23270 0.76197 1.04732 1.01228 1.86430 1.24111 1.34035 1.85069 1.23986 0.92446 0.80750 0.69608 1.90470 1.67215 1.37478 1.46872 1.20462 0.87307 0.85865 1.03411 1.43574 1.56995 1.08137 1.06612 1.19977 1.34599 1.10394 0.82492 0.86688 1.25996 0.95094 0.97037 1.02281 1.69931 1.24015 1.31282 1.28372 0.85023 0.78505 0.78469 0.76562 1.19065 1.21501 1.19288 1.19893 0.81314 0.88125 0.83205 1.90542 1.56151 1.70441 1.31520 1.22140 1.05227 0.91430 0.99191 0.84942 1.23105 0.93789 0.99383 0.99916 1.21043 1.03186 1.00836 0.86706 0.84500 1.18916 0.93366 0.99385 0.93268 1.20797 0.94828 0.93419 0.96031 1.21171 1.00757 0.98442 0.92457 1.21197 0.90271 1.00550 1.01824 1.17707 0.89763 1.04544 0.86554 1.91452 1.66847 1.94259 1.59533 1.17519 0.81490 1.01685 0.96411 1.91425 1.39880 1.84306 1.96371 0.92823 0.93735 0.85089 0.86600 0.89491 0.92006 0.89233 0.84691 0.86318 0.82731 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.26 10.56 113.37 1.20 2.46 16 2 O -0.38 -15.67 10.57 -51.44 -0.54 -16.22 16 3 C 0.49 23.35 6.13 71.23 0.44 23.78 16 4 O -0.53 -28.26 15.78 21.95 0.35 -27.92 16 5 C 0.16 7.25 5.14 85.63 0.44 7.69 16 6 N -0.44 -20.77 2.18 -639.63 -1.39 -22.16 16 7 C -0.35 -16.49 9.18 84.04 0.77 -15.72 16 8 H 0.12 5.04 6.03 -2.91 -0.02 5.02 16 9 C 0.00 -0.11 4.90 84.93 0.42 0.30 16 10 N -0.90 -45.11 9.23 21.66 0.20 -44.91 16 11 Si 0.99 37.75 29.60 68.60 2.03 39.78 16 12 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 13 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 15 C 0.48 21.72 7.06 87.66 0.62 22.34 16 16 O -0.60 -27.88 11.36 -3.07 -0.03 -27.92 16 17 C -0.16 -5.84 5.23 -11.54 -0.06 -5.90 16 18 H 0.13 4.55 6.64 -2.39 -0.02 4.53 16 19 C -0.12 -3.82 9.57 30.58 0.29 -3.53 16 20 C -0.10 -3.15 5.79 -11.56 -0.07 -3.22 16 21 H 0.14 3.74 7.87 -2.39 -0.02 3.72 16 22 C -0.05 -1.66 4.38 -19.83 -0.09 -1.75 16 23 C -0.03 -1.09 6.16 22.27 0.14 -0.95 16 24 C -0.11 -3.14 10.04 22.27 0.22 -2.91 16 25 C -0.12 -3.25 10.02 22.30 0.22 -3.03 16 26 C 0.03 1.10 7.31 22.41 0.16 1.26 16 27 F -0.14 -4.54 17.18 44.97 0.77 -3.77 16 28 C 0.05 1.70 7.25 22.41 0.16 1.86 16 29 F -0.14 -4.95 16.53 44.97 0.74 -4.20 16 30 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.12 5.49 6.35 -2.39 -0.02 5.48 16 34 H 0.09 3.85 7.61 -2.39 -0.02 3.83 16 35 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 36 H 0.09 2.98 6.18 -2.38 -0.01 2.96 16 37 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.12 4.26 5.76 -2.91 -0.02 4.25 16 39 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -63.16 345.87 8.10 -55.07 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 1.11 Total: 29.54 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 4.87 Total: 22.70 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.19 Total: -67.07 kcal Atomic # 8 Polarization: -71.82 SS G_CDS: -0.23 Total: -72.05 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.52 Total: -7.97 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -63.16 8.10 -55.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121782299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.162 kcal (2) G-P(sol) polarization free energy of solvation -63.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds