Wall clock time and date at job start Tue Mar 31 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47037 * 2 1 4 4 N 1.46499 * 109.46892 * 119.99695 * 2 1 3 5 5 C 1.35048 * 126.39949 * 299.99862 * 4 2 1 6 6 N 1.30501 * 108.69904 * 179.76841 * 5 4 2 7 7 C 1.34128 * 109.25428 * 0.38243 * 6 5 4 8 8 S 1.76204 * 125.98350 * 179.88027 * 7 6 5 9 9 O 1.42104 * 106.39598 * 156.14937 * 8 7 6 10 10 O 1.42098 * 106.40117 * 23.23525 * 8 7 6 11 11 N 1.65594 * 107.22039 * 269.68960 * 8 7 6 12 12 C 1.39989 * 119.99656 * 65.00173 * 11 8 7 13 13 C 1.40432 * 125.97226 * 180.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.70499 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97824 * 359.97438 * 12 11 8 26 26 C 1.34667 * 108.02262 * 359.61829 * 7 6 5 27 27 H 1.08997 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46925 * 300.00232 * 1 2 3 29 29 H 1.08995 * 109.46616 * 60.00498 * 1 2 3 30 30 H 1.09001 * 109.47656 * 239.99815 * 2 1 3 31 31 H 1.08999 * 109.47526 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46993 * 299.99567 * 3 2 1 33 33 H 1.09000 * 109.47561 * 59.99552 * 3 2 1 34 34 H 1.07998 * 125.64906 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00453 * 245.00506 * 11 8 7 36 36 H 1.07997 * 126.07138 * 0.02562 * 13 12 11 37 37 H 1.07992 * 126.07316 * 180.25997 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 41 41 H 1.08000 * 126.58687 * 180.20361 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7730 -0.3436 2.4781 6 7 2.3703 -1.1970 3.2642 7 6 3.0187 -2.1051 2.5199 8 16 3.9721 -3.4549 3.1315 9 8 3.9944 -4.4307 2.0988 10 8 3.4944 -3.7219 4.4429 11 7 5.5293 -2.9179 3.3013 12 6 5.8268 -1.9169 4.2336 13 6 7.0966 -1.3704 4.4803 14 6 6.9637 -0.4306 5.4438 15 7 5.6636 -0.3872 5.8033 16 6 5.0808 0.4913 6.8205 17 6 3.9531 1.2849 6.2125 18 1 3.6960 1.1482 5.1725 19 6 3.2496 2.1855 6.9838 20 7 3.5592 2.3481 8.2516 21 14 1.8514 3.1687 6.2304 22 1 2.3819 4.4420 5.6803 23 1 1.2245 2.3810 5.1387 24 1 0.8363 3.4647 7.2730 25 7 4.9677 -1.3247 5.0293 26 6 2.8085 -1.8079 1.2233 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.1775 0.4981 2.7994 35 1 6.2354 -3.2969 2.7547 36 1 8.0153 -1.6473 3.9846 37 1 7.7575 0.1755 5.8547 38 1 5.8453 1.1732 7.1929 39 1 4.6983 -0.1108 7.6446 40 1 4.2851 1.8374 8.6430 41 1 3.1903 -2.3474 0.3692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132039634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:46 Heat of formation + Delta-G solvation = 68.637799 kcal Electronic energy + Delta-G solvation = -27934.083789 eV Core-core repulsion = 23979.362889 eV Total energy + Delta-G solvation = -3954.720900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14565 -40.44022 -36.94427 -36.27273 -35.54686 -35.16897 -33.48120 -31.08457 -30.55413 -29.62100 -29.35003 -27.73551 -26.15144 -23.38527 -23.07912 -22.37289 -20.82870 -20.67068 -20.48134 -18.61206 -17.64144 -17.32321 -17.00706 -16.78424 -16.13685 -15.47444 -15.25646 -14.78258 -14.70309 -14.22493 -14.07658 -13.95673 -13.77519 -13.40910 -13.27628 -12.92489 -12.79731 -12.68693 -12.50717 -11.96338 -11.85673 -11.81593 -11.74421 -11.61896 -11.57569 -11.24852 -11.11422 -10.96117 -10.67359 -10.16204 -9.85232 -9.75254 -9.70183 -8.96452 -8.81136 -8.49599 -8.25979 -7.58461 -6.48332 -4.19521 0.58680 1.68703 2.53769 2.74136 2.79166 3.13293 3.34903 3.40513 3.42382 3.57739 3.72145 4.04906 4.12850 4.44663 4.45693 4.46091 4.57528 4.67266 4.97841 5.09204 5.09634 5.20030 5.28007 5.28912 5.31238 5.33930 5.48606 5.61343 5.72758 6.05551 6.09528 6.18411 6.33208 6.35176 6.54530 6.80317 7.04022 7.10300 7.39338 7.76031 7.87049 8.02706 8.47420 8.53373 8.71671 9.47165 10.89839 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.006007 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.763953 B = 4659.745618 C = 7119.225430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 C -0.166 4.166 4 N -0.449 5.449 5 C 0.185 3.815 6 N -0.369 5.369 7 C -0.550 4.550 8 S 2.727 3.273 9 O -0.966 6.966 10 O -0.918 6.918 11 N -1.014 6.014 12 C 0.267 3.733 13 C -0.305 4.305 14 C 0.060 3.940 15 N -0.313 5.313 16 C 0.248 3.752 17 C -0.595 4.595 18 H 0.068 0.932 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 1.078 2.922 22 H -0.289 1.289 23 H -0.286 1.286 24 H -0.283 1.283 25 N -0.265 5.265 26 C 0.056 3.944 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.209 0.791 35 H 0.428 0.572 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.267 0.733 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -4.014 -19.362 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 C -0.224 4.224 4 N -0.131 5.131 5 C -0.100 4.100 6 N -0.084 5.084 7 C -0.764 4.764 8 S 2.814 3.186 9 O -0.956 6.956 10 O -0.907 6.907 11 N -0.768 5.768 12 C 0.011 3.989 13 C -0.339 4.339 14 C -0.090 4.090 15 N -0.094 5.094 16 C 0.130 3.870 17 C -0.633 4.633 18 H 0.086 0.914 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.906 3.094 22 H -0.216 1.216 23 H -0.212 1.212 24 H -0.208 1.208 25 N -0.095 5.095 26 C -0.086 4.086 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.264 0.736 36 H 0.157 0.843 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.333 -3.386 -17.497 17.973 hybrid contribution 2.390 -0.502 -2.046 3.186 sum 0.057 -3.888 -19.542 19.925 Atomic orbital electron populations 1.22197 0.92803 1.03462 1.03788 1.21597 0.95885 0.94380 0.86141 1.22205 1.02482 0.93873 1.03814 1.46176 1.37183 1.21324 1.08373 1.25375 1.04025 1.02329 0.78320 1.70619 1.06507 1.00843 1.30392 1.33088 1.22246 1.22456 0.98565 1.01097 0.71808 0.72043 0.73701 1.93587 1.86474 1.55646 1.59887 1.93626 1.78105 1.82150 1.36802 1.52563 1.27776 1.49178 1.47250 1.18735 0.93618 0.92775 0.93818 1.20818 0.97021 1.07045 1.09002 1.22398 0.88630 0.99828 0.98193 1.48893 1.04118 1.27568 1.28812 1.19799 0.95319 0.87147 0.84740 1.22110 1.17250 1.24041 0.99923 0.91413 1.25826 1.00813 0.96762 0.94884 1.70805 1.29947 1.41571 1.12332 0.83414 0.75521 0.75190 0.75270 1.21624 1.21238 1.20836 1.77826 1.17337 1.06282 1.08025 1.22584 0.96920 0.90440 0.98695 0.91555 0.91153 0.90235 0.87991 0.91473 0.90236 0.91060 0.77489 0.73620 0.84312 0.81484 0.93785 0.94501 0.92288 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.24 37.16 0.34 -0.77 16 2 C 0.12 0.98 3.59 -67.93 -0.24 0.74 16 3 C -0.17 -1.27 9.24 37.16 0.34 -0.93 16 4 N -0.45 -5.64 2.62 -111.46 -0.29 -5.93 16 5 C 0.19 3.01 11.55 -90.37 -1.04 1.96 16 6 N -0.37 -7.56 11.25 -13.86 -0.16 -7.72 16 7 C -0.55 -9.75 7.06 -17.81 -0.13 -9.87 16 8 S 2.73 48.39 5.65 -107.50 -0.61 47.78 16 9 O -0.97 -16.13 17.84 -57.17 -1.02 -17.15 16 10 O -0.92 -20.66 17.23 -57.17 -0.99 -21.65 16 11 N -1.01 -16.15 5.91 31.39 0.19 -15.97 16 12 C 0.27 5.28 7.72 -154.55 -1.19 4.09 16 13 C -0.31 -5.29 10.83 -39.82 -0.43 -5.72 16 14 C 0.06 1.13 11.44 -17.24 -0.20 0.93 16 15 N -0.31 -7.32 3.67 -62.56 -0.23 -7.55 16 16 C 0.25 6.35 5.57 -5.19 -0.03 6.32 16 17 C -0.59 -16.76 9.24 -34.44 -0.32 -17.07 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 20 N -0.91 -26.79 13.65 55.43 0.76 -26.03 16 21 Si 1.08 24.96 29.90 -169.99 -5.08 19.87 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 N -0.26 -6.36 11.46 31.41 0.36 -6.00 16 26 C 0.06 0.76 11.28 -16.56 -0.19 0.57 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.53 7.95 -51.93 -0.41 0.11 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 34 H 0.21 2.94 8.06 -52.49 -0.42 2.52 16 35 H 0.43 4.87 8.95 -34.47 -0.31 4.56 16 36 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.17 2.46 8.06 -52.49 -0.42 2.04 16 38 H 0.04 1.07 7.94 -51.93 -0.41 0.66 16 39 H 0.04 1.01 8.00 -51.93 -0.42 0.59 16 40 H 0.27 7.70 7.22 -40.82 -0.29 7.40 16 41 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -39.20 371.43 -9.92 -49.11 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.26 Total: 4.89 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.18 Total: -19.26 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: 0.63 Total: -69.20 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.01 Total: -38.80 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 16 Polarization: 48.39 SS G_CDS: -0.61 Total: 47.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.20 -9.92 -49.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132039634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.749 kcal (2) G-P(sol) polarization free energy of solvation -39.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds