Wall clock time and date at job start Tue Mar 31 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47037 * 2 1 4 4 N 1.46499 * 109.46892 * 119.99695 * 2 1 3 5 5 C 1.35048 * 126.39949 * 299.99862 * 4 2 1 6 6 N 1.30501 * 108.69904 * 179.76841 * 5 4 2 7 7 C 1.34128 * 109.25428 * 0.38243 * 6 5 4 8 8 S 1.76204 * 125.98350 * 179.88027 * 7 6 5 9 9 O 1.42104 * 106.39598 * 156.14937 * 8 7 6 10 10 O 1.42098 * 106.40117 * 23.23525 * 8 7 6 11 11 N 1.65594 * 107.22039 * 269.68960 * 8 7 6 12 12 C 1.39989 * 119.99656 * 65.00173 * 11 8 7 13 13 C 1.40432 * 125.97226 * 180.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.70499 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97824 * 359.97438 * 12 11 8 26 26 C 1.34667 * 108.02262 * 359.61829 * 7 6 5 27 27 H 1.08997 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46925 * 300.00232 * 1 2 3 29 29 H 1.08995 * 109.46616 * 60.00498 * 1 2 3 30 30 H 1.09001 * 109.47656 * 239.99815 * 2 1 3 31 31 H 1.08999 * 109.47526 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46993 * 299.99567 * 3 2 1 33 33 H 1.09000 * 109.47561 * 59.99552 * 3 2 1 34 34 H 1.07998 * 125.64906 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00453 * 245.00506 * 11 8 7 36 36 H 1.07997 * 126.07138 * 0.02562 * 13 12 11 37 37 H 1.07992 * 126.07316 * 180.25997 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 41 41 H 1.08000 * 126.58687 * 180.20361 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7730 -0.3436 2.4781 6 7 2.3703 -1.1970 3.2642 7 6 3.0187 -2.1051 2.5199 8 16 3.9721 -3.4549 3.1315 9 8 3.9944 -4.4307 2.0988 10 8 3.4944 -3.7219 4.4429 11 7 5.5293 -2.9179 3.3013 12 6 5.8268 -1.9169 4.2336 13 6 7.0966 -1.3704 4.4803 14 6 6.9637 -0.4306 5.4438 15 7 5.6636 -0.3872 5.8033 16 6 5.0808 0.4913 6.8205 17 6 3.9531 1.2849 6.2125 18 1 3.6960 1.1482 5.1725 19 6 3.2496 2.1855 6.9838 20 7 3.5592 2.3481 8.2516 21 14 1.8514 3.1687 6.2304 22 1 2.3819 4.4420 5.6803 23 1 1.2245 2.3810 5.1387 24 1 0.8363 3.4647 7.2730 25 7 4.9677 -1.3247 5.0293 26 6 2.8085 -1.8079 1.2233 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.1775 0.4981 2.7994 35 1 6.2354 -3.2969 2.7547 36 1 8.0153 -1.6473 3.9846 37 1 7.7575 0.1755 5.8547 38 1 5.8453 1.1732 7.1929 39 1 4.6983 -0.1108 7.6446 40 1 4.2851 1.8374 8.6430 41 1 3.1903 -2.3474 0.3692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132039634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:45 Heat of formation + Delta-G solvation = 39.716672 kcal Electronic energy + Delta-G solvation = -27935.337903 eV Core-core repulsion = 23979.362889 eV Total energy + Delta-G solvation = -3955.975014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.25994 -42.00246 -38.37064 -37.07735 -37.04080 -36.74976 -35.44581 -32.34938 -32.08194 -30.93534 -30.73273 -28.28266 -28.05804 -25.07321 -24.28618 -23.58767 -22.38341 -22.14977 -21.52570 -20.01013 -19.16093 -18.68778 -18.62197 -18.16950 -17.26704 -16.90311 -16.45108 -16.24304 -15.96533 -15.61358 -15.45770 -15.25333 -14.99182 -14.93156 -14.43551 -14.27291 -14.12812 -13.61784 -13.49292 -13.36857 -13.25402 -13.22689 -13.16540 -13.09713 -12.73401 -12.54067 -12.48185 -12.38271 -12.21565 -11.97236 -11.32771 -11.01550 -10.92533 -10.85887 -10.62367 -10.02349 -9.84210 -9.21806 -8.70551 -6.44626 -0.76358 0.57955 1.19662 1.39614 1.46939 1.58566 1.64779 1.74153 1.77832 1.94599 2.25294 2.52408 2.69855 3.08705 3.16570 3.54756 3.67519 3.70974 3.84807 3.85817 4.02145 4.04508 4.21282 4.42362 4.53392 4.59377 4.72043 4.74180 4.75480 4.79885 4.89814 4.96846 4.97331 5.16983 5.17716 5.30545 5.57551 5.80148 5.97241 6.03854 6.06279 6.38304 6.49955 6.85398 6.98641 7.29811 8.66559 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.006007 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.763953 B = 4659.745618 C = 7119.225430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 C -0.164 4.164 4 N -0.437 5.437 5 C 0.176 3.824 6 N -0.436 5.436 7 C -0.588 4.588 8 S 2.743 3.257 9 O -0.958 6.958 10 O -0.976 6.976 11 N -0.997 5.997 12 C 0.268 3.732 13 C -0.289 4.289 14 C 0.058 3.942 15 N -0.346 5.346 16 C 0.259 3.741 17 C -0.602 4.602 18 H 0.049 0.951 19 C -0.024 4.024 20 N -0.931 5.931 21 Si 1.116 2.884 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.282 1.282 25 N -0.324 5.324 26 C 0.083 3.917 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.216 0.784 35 H 0.448 0.552 36 H 0.187 0.813 37 H 0.205 0.795 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.259 0.741 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -3.483 -23.174 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 C -0.222 4.222 4 N -0.116 5.116 5 C -0.111 4.111 6 N -0.151 5.151 7 C -0.802 4.802 8 S 2.832 3.168 9 O -0.948 6.948 10 O -0.965 6.965 11 N -0.755 5.755 12 C 0.010 3.990 13 C -0.322 4.322 14 C -0.090 4.090 15 N -0.127 5.127 16 C 0.139 3.861 17 C -0.640 4.640 18 H 0.067 0.933 19 C -0.222 4.222 20 N -0.569 5.569 21 Si 0.937 3.063 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.208 1.208 25 N -0.153 5.153 26 C -0.061 4.061 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.232 0.768 35 H 0.289 0.711 36 H 0.204 0.796 37 H 0.222 0.778 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.407 -2.892 -21.353 21.593 hybrid contribution 2.172 -0.732 -1.006 2.503 sum 0.765 -3.625 -22.358 22.663 Atomic orbital electron populations 1.22207 0.91771 1.03352 1.04638 1.22074 0.96720 0.94517 0.85133 1.22216 1.01661 0.93739 1.04539 1.46435 1.35895 1.20736 1.08578 1.25434 1.03885 1.02039 0.79699 1.70479 1.08656 1.02836 1.33166 1.32841 1.24170 1.23040 1.00189 1.00315 0.71819 0.72091 0.72616 1.93579 1.86518 1.55742 1.58964 1.93558 1.79360 1.83540 1.40088 1.52313 1.28196 1.48196 1.46773 1.19102 0.94208 0.92514 0.93177 1.21337 0.97578 1.05344 1.07891 1.23194 0.87621 1.00223 0.98003 1.48620 1.05706 1.28640 1.29771 1.19383 0.95107 0.86894 0.84673 1.22260 1.18289 1.24384 0.99106 0.93303 1.27222 1.02677 0.97652 0.94663 1.70911 1.30431 1.42369 1.13150 0.82963 0.73083 0.75117 0.75092 1.19078 1.19829 1.20778 1.77748 1.19653 1.07920 1.10004 1.23233 0.94769 0.89763 0.98384 0.92128 0.92382 0.87335 0.84693 0.92688 0.87164 0.92704 0.76806 0.71092 0.79551 0.77783 0.92592 0.97683 0.93186 0.75077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.24 71.98 0.67 -1.08 16 2 C 0.12 1.48 3.59 44.99 0.16 1.64 16 3 C -0.16 -2.07 9.24 71.98 0.67 -1.40 16 4 N -0.44 -10.18 2.62 -506.53 -1.33 -11.50 16 5 C 0.18 5.78 11.55 180.26 2.08 7.86 16 6 N -0.44 -18.46 11.25 -197.77 -2.23 -20.68 16 7 C -0.59 -20.82 7.06 83.52 0.59 -20.23 16 8 S 2.74 97.59 5.65 -56.49 -0.32 97.27 16 9 O -0.96 -30.71 17.84 -128.00 -2.28 -32.99 16 10 O -0.98 -46.10 17.23 -128.00 -2.21 -48.30 16 11 N -1.00 -30.67 5.91 -54.61 -0.32 -30.99 16 12 C 0.27 10.43 7.72 133.39 1.03 11.46 16 13 C -0.29 -9.27 10.83 22.12 0.24 -9.04 16 14 C 0.06 2.08 11.44 83.52 0.96 3.03 16 15 N -0.35 -16.50 3.67 -351.84 -1.29 -17.79 16 16 C 0.26 13.83 5.57 85.64 0.48 14.31 16 17 C -0.60 -35.19 9.24 25.60 0.24 -34.95 16 18 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 19 C -0.02 -1.37 5.46 84.65 0.46 -0.90 16 20 N -0.93 -56.26 13.65 21.45 0.29 -55.97 16 21 Si 1.12 50.68 29.90 68.60 2.05 52.73 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 N -0.32 -15.97 11.46 -54.54 -0.63 -16.60 16 26 C 0.08 2.07 11.28 83.09 0.94 3.01 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.78 7.95 -2.39 -0.02 0.76 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.14 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.88 7.95 -2.39 -0.02 0.86 16 34 H 0.22 6.29 8.06 -2.91 -0.02 6.27 16 35 H 0.45 9.12 8.95 -96.75 -0.87 8.25 16 36 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.21 5.49 8.06 -2.91 -0.02 5.46 16 38 H 0.06 2.80 7.94 -2.39 -0.02 2.78 16 39 H 0.01 0.31 8.00 -2.39 -0.02 0.29 16 40 H 0.26 15.53 7.22 -92.71 -0.67 14.86 16 41 H 0.23 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -91.28 371.43 0.54 -90.74 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.30 Total: 20.39 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 8.50 Total: -26.29 kcal Atomic # 7 Polarization: -148.04 SS G_CDS: -5.50 Total: -153.53 kcal Atomic # 8 Polarization: -76.81 SS G_CDS: -4.49 Total: -81.30 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Atomic # 16 Polarization: 97.59 SS G_CDS: -0.32 Total: 97.27 kcal Total: -91.28 0.54 -90.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132039634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.458 kcal (2) G-P(sol) polarization free energy of solvation -91.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds