Wall clock time and date at job start Tue Mar 31 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30839 * 125.90287 * 2 1 4 4 N 1.40085 * 108.20914 * 180.26057 * 3 2 1 5 5 C 1.46504 * 126.03746 * 179.70234 * 4 3 2 6 6 C 1.34949 * 107.92112 * 359.71684 * 4 3 2 7 7 C 1.50704 * 126.12291 * 179.97438 * 6 4 3 8 8 C 1.35310 * 107.74769 * 0.02562 * 6 4 3 9 9 S 1.76203 * 126.04120 * 179.97438 * 8 6 4 10 10 O 1.42101 * 106.39739 * 336.45477 * 9 8 6 11 11 O 1.42093 * 106.40291 * 203.53768 * 9 8 6 12 12 N 1.65598 * 107.21669 * 89.99164 * 9 8 6 13 13 C 1.39988 * 119.99927 * 65.00346 * 12 9 8 14 14 C 1.40432 * 125.97374 * 180.02562 * 13 12 9 15 15 C 1.35251 * 107.86019 * 179.73886 * 14 13 12 16 16 N 1.34962 * 107.86128 * 0.42675 * 15 14 13 17 17 C 1.46500 * 125.97410 * 179.83595 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71196 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31219 * 125.97677 * 0.02562 * 13 12 9 27 27 H 1.09007 * 109.47049 * 270.21511 * 1 2 3 28 28 H 1.09005 * 109.47246 * 30.20182 * 1 2 3 29 29 H 1.08988 * 109.47478 * 150.20847 * 1 2 3 30 30 H 1.09000 * 109.46791 * 270.02282 * 5 4 3 31 31 H 1.08996 * 109.47397 * 30.02073 * 5 4 3 32 32 H 1.08993 * 109.46894 * 150.02795 * 5 4 3 33 33 H 1.08998 * 109.47636 * 270.02905 * 7 6 4 34 34 H 1.08994 * 109.46914 * 30.03569 * 7 6 4 35 35 H 1.09003 * 109.46764 * 150.02886 * 7 6 4 36 36 H 0.97005 * 120.00179 * 244.99877 * 12 9 8 37 37 H 1.07998 * 126.07497 * 0.02562 * 14 13 12 38 38 H 1.08000 * 126.07179 * 180.26370 * 15 14 13 39 39 H 1.09004 * 109.47078 * 4.71958 * 17 16 15 40 40 H 1.08993 * 109.47364 * 244.71729 * 17 16 15 41 41 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0142 6 6 3.6141 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3271 -1.1330 0.0036 9 16 1.7807 -2.8082 0.0090 10 8 2.8417 -3.5780 -0.5395 11 8 0.4655 -2.8030 -0.5290 12 7 1.6366 -3.2717 1.5922 13 6 0.6836 -2.6614 2.4163 14 6 0.4549 -2.9548 3.7704 15 6 -0.5394 -2.1487 4.2073 16 7 -0.9347 -1.3799 3.1708 17 6 -1.9928 -0.3674 3.2048 18 6 -1.4392 0.9538 2.7366 19 1 -0.4028 1.0313 2.4428 20 6 -2.2556 2.0636 2.6835 21 7 -3.5189 1.9680 3.0363 22 14 -1.5695 3.7010 2.1025 23 1 -1.0436 4.4583 3.2667 24 1 -0.4720 3.4612 1.1313 25 1 -2.6473 4.4851 1.4478 26 7 -0.1521 -1.7152 2.0585 27 1 -0.3633 0.0039 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8917 -0.5105 30 1 5.0771 1.7136 -1.0439 31 1 4.5592 2.4342 0.4990 32 1 5.6121 0.9991 0.4960 33 1 5.1239 -1.8138 -1.0372 34 1 5.6537 -1.0903 0.5003 35 1 4.6102 -2.5322 0.5082 36 1 2.2126 -3.9661 1.9487 37 1 0.9827 -3.6899 4.3598 38 1 -0.9468 -2.1262 5.2073 39 1 -2.3648 -0.2646 4.2242 40 1 -2.8086 -0.6722 2.5494 41 1 -3.8753 1.1177 3.3377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133434573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:29 Heat of formation + Delta-G solvation = 88.282403 kcal Electronic energy + Delta-G solvation = -28849.514575 eV Core-core repulsion = 24895.645529 eV Total energy + Delta-G solvation = -3953.869046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20223 -40.58700 -37.04261 -35.60390 -35.27206 -34.05258 -33.59993 -32.21834 -30.67535 -29.70720 -28.92384 -27.24925 -26.30127 -25.30078 -23.20083 -21.31055 -20.83261 -20.69628 -19.43659 -18.73555 -17.46151 -17.20433 -17.05304 -16.78436 -15.78887 -15.56841 -15.31468 -14.69974 -14.34472 -13.84582 -13.73024 -13.47305 -13.45586 -13.39335 -13.04973 -12.99844 -12.67174 -12.54448 -12.32035 -12.04773 -11.93372 -11.83345 -11.75386 -11.60308 -11.34173 -11.16183 -11.04895 -10.81179 -10.69739 -10.16700 -10.05185 -9.71984 -9.07726 -8.96132 -8.73421 -8.56894 -8.38457 -7.68354 -6.59031 -4.34401 0.63203 1.64511 2.48615 2.58624 2.64937 2.98885 3.29490 3.37305 3.44751 3.60411 3.65392 4.01553 4.36561 4.40186 4.40978 4.64068 4.85488 4.97086 4.99191 5.17455 5.18059 5.28023 5.30567 5.35609 5.64124 5.66502 5.82750 5.97235 6.08121 6.22384 6.45040 6.59185 6.67868 6.68688 6.84294 6.94159 6.97491 7.25517 7.55950 7.67640 7.72991 7.85416 8.30758 8.37321 8.58907 9.32801 10.78188 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005811 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.053423 B = 4817.455194 C = 6433.551702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.201 3.799 3 N -0.305 5.305 4 N -0.366 5.366 5 C 0.094 3.906 6 C 0.198 3.802 7 C -0.111 4.111 8 C -0.815 4.815 9 S 2.725 3.275 10 O -0.969 6.969 11 O -0.933 6.933 12 N -1.018 6.018 13 C 0.281 3.719 14 C -0.305 4.305 15 C 0.069 3.931 16 N -0.315 5.315 17 C 0.245 3.755 18 C -0.612 4.612 19 H 0.072 0.928 20 C 0.031 3.969 21 N -0.901 5.901 22 Si 1.064 2.936 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.281 1.281 26 N -0.295 5.295 27 H 0.154 0.846 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.428 0.572 37 H 0.140 0.860 38 H 0.170 0.830 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.243 -7.897 -1.293 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.032 3.968 3 N -0.125 5.125 4 N -0.142 5.142 5 C -0.047 4.047 6 C 0.062 3.938 7 C -0.169 4.169 8 C -0.915 4.915 9 S 2.814 3.186 10 O -0.959 6.959 11 O -0.922 6.922 12 N -0.770 5.770 13 C 0.026 3.974 14 C -0.338 4.338 15 C -0.083 4.083 16 N -0.096 5.096 17 C 0.127 3.873 18 C -0.650 4.650 19 H 0.090 0.910 20 C -0.174 4.174 21 N -0.536 5.536 22 Si 0.891 3.109 23 H -0.214 1.214 24 H -0.202 1.202 25 H -0.207 1.207 26 N -0.126 5.126 27 H 0.171 0.829 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.263 0.737 37 H 0.158 0.842 38 H 0.187 0.813 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.238 -4.416 -3.370 16.219 hybrid contribution 1.352 -2.466 1.614 3.243 sum 16.590 -6.882 -1.755 18.046 Atomic orbital electron populations 1.21571 0.83966 1.03474 1.09780 1.22239 0.97573 0.87346 0.89604 1.77603 0.84900 1.22006 1.28009 1.48968 1.06768 1.03931 1.54581 1.21929 0.83872 0.95342 1.03579 1.20870 0.95389 0.85184 0.92320 1.20835 0.92541 0.98445 1.05056 1.30873 0.99715 1.24006 1.36936 1.00849 0.73603 0.72655 0.71463 1.93547 1.57414 1.69552 1.75421 1.93567 1.37230 1.86273 1.75144 1.52691 1.44645 1.49260 1.30422 1.18720 0.92602 0.95420 0.90701 1.20843 1.08055 1.10829 0.94099 1.22418 0.97364 0.93623 0.94846 1.48887 1.27348 1.28562 1.04784 1.19865 0.83501 0.85351 0.98557 1.22129 0.99912 0.93301 1.49675 0.90994 1.25767 0.94243 1.03064 0.94371 1.70826 1.13723 1.28878 1.40215 0.83601 0.75779 0.74563 0.76981 1.21397 1.20246 1.20684 1.77580 1.08546 1.16786 1.09657 0.82877 0.91901 0.88176 0.90387 0.88796 0.89436 0.88398 0.90346 0.88451 0.73668 0.84177 0.81319 0.93512 0.94203 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.70 36.00 0.31 -2.61 16 2 C 0.20 4.21 7.08 -82.41 -0.58 3.63 16 3 N -0.30 -6.23 12.58 33.67 0.42 -5.81 16 4 N -0.37 -5.74 4.01 -63.89 -0.26 -6.00 16 5 C 0.09 0.92 11.27 59.85 0.67 1.59 16 6 C 0.20 2.98 6.92 -82.26 -0.57 2.41 16 7 C -0.11 -1.11 9.15 36.01 0.33 -0.78 16 8 C -0.81 -14.67 6.10 -40.01 -0.24 -14.91 16 9 S 2.72 45.95 5.45 -107.50 -0.59 45.36 16 10 O -0.97 -15.41 15.78 -57.17 -0.90 -16.31 16 11 O -0.93 -18.97 14.57 -57.17 -0.83 -19.81 16 12 N -1.02 -15.19 5.91 31.39 0.19 -15.00 16 13 C 0.28 5.13 7.72 -154.55 -1.19 3.94 16 14 C -0.30 -4.88 10.83 -39.82 -0.43 -5.31 16 15 C 0.07 1.18 11.44 -17.24 -0.20 0.98 16 16 N -0.32 -6.69 3.67 -62.56 -0.23 -6.92 16 17 C 0.25 5.74 5.53 -5.19 -0.03 5.71 16 18 C -0.61 -16.04 7.61 -34.44 -0.26 -16.30 16 19 H 0.07 1.98 6.43 -52.49 -0.34 1.65 16 20 C 0.03 0.84 5.46 -17.82 -0.10 0.75 16 21 N -0.90 -25.33 13.65 55.43 0.76 -24.57 16 22 Si 1.06 24.90 29.90 -169.99 -5.08 19.82 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 N -0.29 -6.34 7.57 31.41 0.24 -6.11 16 27 H 0.15 3.73 2.02 -51.93 -0.11 3.62 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.10 2.23 5.66 -51.94 -0.29 1.93 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.56 7.05 -51.93 -0.37 0.19 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.54 7.08 -51.93 -0.37 0.17 16 35 H 0.10 0.95 6.78 -51.93 -0.35 0.60 16 36 H 0.43 4.54 8.96 -34.47 -0.31 4.23 16 37 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 40 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.27 7.33 7.22 -40.82 -0.29 7.03 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -35.51 348.05 -7.92 -43.43 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.59 Total: 7.58 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.29 Total: -20.91 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 1.12 Total: -64.41 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.74 Total: -36.12 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Atomic # 16 Polarization: 45.95 SS G_CDS: -0.59 Total: 45.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.51 -7.92 -43.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133434573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.712 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds