Wall clock time and date at job start Tue Mar 31 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30839 * 125.90287 * 2 1 4 4 N 1.40085 * 108.20914 * 180.26057 * 3 2 1 5 5 C 1.46504 * 126.03746 * 179.70234 * 4 3 2 6 6 C 1.34949 * 107.92112 * 359.71684 * 4 3 2 7 7 C 1.50704 * 126.12291 * 179.97438 * 6 4 3 8 8 C 1.35310 * 107.74769 * 0.02562 * 6 4 3 9 9 S 1.76203 * 126.04120 * 179.97438 * 8 6 4 10 10 O 1.42101 * 106.39739 * 336.45477 * 9 8 6 11 11 O 1.42093 * 106.40291 * 203.53768 * 9 8 6 12 12 N 1.65598 * 107.21669 * 89.99164 * 9 8 6 13 13 C 1.39988 * 119.99927 * 65.00346 * 12 9 8 14 14 C 1.40432 * 125.97374 * 180.02562 * 13 12 9 15 15 C 1.35251 * 107.86019 * 179.73886 * 14 13 12 16 16 N 1.34962 * 107.86128 * 0.42675 * 15 14 13 17 17 C 1.46500 * 125.97410 * 179.83595 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71196 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31219 * 125.97677 * 0.02562 * 13 12 9 27 27 H 1.09007 * 109.47049 * 270.21511 * 1 2 3 28 28 H 1.09005 * 109.47246 * 30.20182 * 1 2 3 29 29 H 1.08988 * 109.47478 * 150.20847 * 1 2 3 30 30 H 1.09000 * 109.46791 * 270.02282 * 5 4 3 31 31 H 1.08996 * 109.47397 * 30.02073 * 5 4 3 32 32 H 1.08993 * 109.46894 * 150.02795 * 5 4 3 33 33 H 1.08998 * 109.47636 * 270.02905 * 7 6 4 34 34 H 1.08994 * 109.46914 * 30.03569 * 7 6 4 35 35 H 1.09003 * 109.46764 * 150.02886 * 7 6 4 36 36 H 0.97005 * 120.00179 * 244.99877 * 12 9 8 37 37 H 1.07998 * 126.07497 * 0.02562 * 14 13 12 38 38 H 1.08000 * 126.07179 * 180.26370 * 15 14 13 39 39 H 1.09004 * 109.47078 * 4.71958 * 17 16 15 40 40 H 1.08993 * 109.47364 * 244.71729 * 17 16 15 41 41 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0142 6 6 3.6141 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3271 -1.1330 0.0036 9 16 1.7807 -2.8082 0.0090 10 8 2.8417 -3.5780 -0.5395 11 8 0.4655 -2.8030 -0.5290 12 7 1.6366 -3.2717 1.5922 13 6 0.6836 -2.6614 2.4163 14 6 0.4549 -2.9548 3.7704 15 6 -0.5394 -2.1487 4.2073 16 7 -0.9347 -1.3799 3.1708 17 6 -1.9928 -0.3674 3.2048 18 6 -1.4392 0.9538 2.7366 19 1 -0.4028 1.0313 2.4428 20 6 -2.2556 2.0636 2.6835 21 7 -3.5189 1.9680 3.0363 22 14 -1.5695 3.7010 2.1025 23 1 -1.0436 4.4583 3.2667 24 1 -0.4720 3.4612 1.1313 25 1 -2.6473 4.4851 1.4478 26 7 -0.1521 -1.7152 2.0585 27 1 -0.3633 0.0039 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8917 -0.5105 30 1 5.0771 1.7136 -1.0439 31 1 4.5592 2.4342 0.4990 32 1 5.6121 0.9991 0.4960 33 1 5.1239 -1.8138 -1.0372 34 1 5.6537 -1.0903 0.5003 35 1 4.6102 -2.5322 0.5082 36 1 2.2126 -3.9661 1.9487 37 1 0.9827 -3.6899 4.3598 38 1 -0.9468 -2.1262 5.2073 39 1 -2.3648 -0.2646 4.2242 40 1 -2.8086 -0.6722 2.5494 41 1 -3.8753 1.1177 3.3377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133434573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:29 Heat of formation + Delta-G solvation = 61.861452 kcal Electronic energy + Delta-G solvation = -28850.660273 eV Core-core repulsion = 24895.645529 eV Total energy + Delta-G solvation = -3955.014744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.47520 -42.01073 -38.40044 -36.99864 -36.75861 -35.51739 -35.21093 -33.28857 -32.34785 -31.11570 -30.30018 -28.32282 -28.05565 -26.49941 -25.06944 -22.65727 -22.19122 -22.11884 -20.71998 -20.08092 -19.19649 -18.67937 -18.46349 -18.08170 -17.00197 -16.78237 -16.68158 -16.10269 -15.94078 -15.66143 -15.09532 -14.93002 -14.54426 -14.42989 -14.37045 -14.26320 -14.05641 -13.75598 -13.59327 -13.44021 -13.36950 -13.26670 -13.17597 -13.07033 -12.77600 -12.71170 -12.50129 -12.45756 -12.34859 -12.03075 -11.53155 -11.14075 -10.97461 -10.64450 -10.26188 -10.08452 -9.82551 -9.18453 -8.69688 -6.45614 -0.67086 0.48723 1.15062 1.18434 1.41981 1.45844 1.54286 1.57388 1.75140 1.95948 2.24193 2.46041 2.71217 3.06584 3.17462 3.39430 3.58724 3.70028 3.91605 4.05985 4.18701 4.27921 4.30211 4.47777 4.53053 4.61267 4.69608 4.76749 4.80951 4.89630 4.93321 4.98326 5.00625 5.12388 5.23903 5.56125 5.68620 5.86448 5.91774 5.97823 6.09641 6.38676 6.46971 6.50879 6.95549 7.26048 8.66844 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005811 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.053423 B = 4817.455194 C = 6433.551702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 N -0.346 5.346 4 N -0.363 5.363 5 C 0.079 3.921 6 C 0.212 3.788 7 C -0.115 4.115 8 C -0.841 4.841 9 S 2.741 3.259 10 O -0.958 6.958 11 O -0.974 6.974 12 N -1.001 6.001 13 C 0.277 3.723 14 C -0.289 4.289 15 C 0.065 3.935 16 N -0.345 5.345 17 C 0.257 3.743 18 C -0.606 4.606 19 H 0.054 0.946 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 1.098 2.902 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.278 1.278 26 N -0.340 5.340 27 H 0.139 0.861 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.448 0.552 37 H 0.185 0.815 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.969 -9.148 -0.188 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.009 3.991 3 N -0.168 5.168 4 N -0.139 5.139 5 C -0.060 4.060 6 C 0.075 3.925 7 C -0.172 4.172 8 C -0.941 4.941 9 S 2.831 3.169 10 O -0.948 6.948 11 O -0.964 6.964 12 N -0.757 5.757 13 C 0.020 3.980 14 C -0.322 4.322 15 C -0.084 4.084 16 N -0.126 5.126 17 C 0.137 3.863 18 C -0.644 4.644 19 H 0.072 0.928 20 C -0.209 4.209 21 N -0.562 5.562 22 Si 0.921 3.079 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.204 1.204 26 N -0.170 5.170 27 H 0.156 0.844 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.288 0.712 37 H 0.202 0.798 38 H 0.222 0.778 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.004 -5.696 -2.242 19.966 hybrid contribution 0.379 -2.172 1.249 2.534 sum 19.383 -7.868 -0.993 20.943 Atomic orbital electron populations 1.21347 0.86354 1.02257 1.08500 1.21956 0.96791 0.89007 0.91321 1.77427 0.87586 1.22897 1.28856 1.49298 1.06217 1.05037 1.53387 1.22475 0.82744 0.95098 1.05665 1.21593 0.96035 0.85330 0.89554 1.21157 0.91280 0.97964 1.06839 1.30939 1.00775 1.23505 1.38881 1.00222 0.72775 0.72293 0.71599 1.93547 1.56629 1.69177 1.75473 1.93519 1.39642 1.86794 1.76421 1.52431 1.44265 1.49474 1.29551 1.19095 0.92235 0.94681 0.92014 1.21330 1.07148 1.10628 0.93107 1.23177 0.97239 0.92501 0.95459 1.48615 1.28107 1.29750 1.06143 1.19449 0.83722 0.84935 0.98169 1.22244 0.98926 0.94693 1.48584 0.92817 1.26720 0.94199 1.05656 0.94354 1.70892 1.14361 1.28808 1.42146 0.83138 0.75180 0.72453 0.77079 1.19518 1.20979 1.20354 1.77525 1.10049 1.18745 1.10728 0.84407 0.93412 0.88996 0.88233 0.89170 0.85133 0.86593 0.86272 0.87919 0.71186 0.79753 0.77820 0.92448 0.96522 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.70 71.23 0.62 -5.47 16 2 C 0.18 7.68 7.08 43.10 0.31 7.99 16 3 N -0.35 -14.38 12.58 -47.39 -0.60 -14.98 16 4 N -0.36 -10.70 4.01 -356.03 -1.43 -12.13 16 5 C 0.08 1.28 11.27 127.77 1.44 2.72 16 6 C 0.21 5.87 6.92 41.41 0.29 6.16 16 7 C -0.11 -1.78 9.15 71.24 0.65 -1.13 16 8 C -0.84 -29.90 6.10 21.99 0.13 -29.76 16 9 S 2.74 90.46 5.45 -56.49 -0.31 90.15 16 10 O -0.96 -28.33 15.78 -128.00 -2.02 -30.35 16 11 O -0.97 -40.82 14.57 -128.00 -1.86 -42.69 16 12 N -1.00 -28.02 5.91 -54.61 -0.32 -28.34 16 13 C 0.28 9.75 7.72 133.39 1.03 10.78 16 14 C -0.29 -8.41 10.83 22.12 0.24 -8.17 16 15 C 0.06 2.11 11.44 83.52 0.96 3.06 16 16 N -0.34 -14.80 3.67 -351.83 -1.29 -16.09 16 17 C 0.26 12.46 5.53 85.64 0.47 12.93 16 18 C -0.61 -33.00 7.61 25.60 0.19 -32.80 16 19 H 0.05 3.10 6.43 -2.91 -0.02 3.08 16 20 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 21 N -0.93 -53.42 13.65 21.45 0.29 -53.13 16 22 Si 1.10 51.66 29.90 68.60 2.05 53.71 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 N -0.34 -14.89 7.57 -54.54 -0.41 -15.30 16 27 H 0.14 7.14 2.02 -2.38 0.00 7.13 16 28 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.09 4.44 5.66 -2.39 -0.01 4.43 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.13 0.98 7.05 -2.39 -0.02 0.96 16 33 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.12 0.90 7.08 -2.39 -0.02 0.88 16 35 H 0.10 1.54 6.78 -2.39 -0.02 1.52 16 36 H 0.45 8.09 8.96 -96.74 -0.87 7.23 16 37 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.21 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.06 2.64 7.94 -2.39 -0.02 2.62 16 40 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 41 H 0.26 14.93 7.22 -92.71 -0.67 14.26 16 Total: -1.00 -82.29 348.05 1.23 -81.06 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.33 Total: 21.77 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 6.79 Total: -33.70 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -3.76 Total: -139.97 kcal Atomic # 8 Polarization: -69.15 SS G_CDS: -3.89 Total: -73.03 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Atomic # 16 Polarization: 90.46 SS G_CDS: -0.31 Total: 90.15 kcal Total: -82.29 1.23 -81.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133434573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.926 kcal (2) G-P(sol) polarization free energy of solvation -82.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds