Wall clock time and date at job start Tue Mar 31 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37772 * 119.95845 * 2 1 4 4 C 1.39674 * 119.91485 * 179.72025 * 3 2 1 5 5 C 1.47678 * 120.07767 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00286 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.40529 * 120.00385 * 180.02562 * 7 5 4 9 9 C 1.40669 * 126.08212 * 359.69867 * 8 7 5 10 10 N 1.30907 * 108.38849 * 179.81246 * 9 8 7 11 11 N 1.40064 * 108.40797 * 0.43975 * 10 9 8 12 12 C 1.37324 * 126.06373 * 179.71446 * 11 10 9 13 13 H 1.08000 * 119.99814 * 179.97438 * 12 11 10 14 14 C 1.38983 * 120.00224 * 0.02562 * 12 11 10 15 15 N 1.31297 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47287 * 90.00019 * 16 14 12 18 18 H 1.48502 * 109.47323 * 209.99946 * 16 14 12 19 19 H 1.48504 * 109.46923 * 330.00271 * 16 14 12 20 20 C 1.35696 * 126.09070 * 180.02562 * 8 7 5 21 21 C 1.39712 * 119.84097 * 359.97438 * 4 3 2 22 22 C 1.37724 * 119.92254 * 0.02562 * 21 4 3 23 23 C 1.38994 * 119.95919 * 179.72293 * 2 1 3 24 24 N 1.39982 * 119.92098 * 0.25714 * 23 2 1 25 25 C 1.35126 * 127.39590 * 227.14314 * 24 23 2 26 26 N 1.30714 * 107.26784 * 179.97438 * 25 24 23 27 27 N 1.28424 * 110.65360 * 0.02562 * 26 25 24 28 28 N 1.28944 * 110.21234 * 359.70194 * 27 26 25 29 29 H 1.09000 * 109.47076 * 95.33809 * 1 2 3 30 30 H 1.09000 * 109.46901 * 215.33550 * 1 2 3 31 31 H 1.09002 * 109.47323 * 335.33349 * 1 2 3 32 32 H 1.07998 * 120.03983 * 359.70201 * 3 2 1 33 33 H 0.97004 * 120.00243 * 0.02562 * 7 5 4 34 34 H 1.08009 * 125.80356 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99962 * 180.02562 * 15 14 12 36 36 H 1.08004 * 126.24517 * 359.97438 * 20 8 7 37 37 H 1.08004 * 120.04008 * 179.97438 * 21 4 3 38 38 H 1.07998 * 119.96174 * 179.97438 * 22 21 4 39 39 H 1.08005 * 126.36691 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1936 0.0000 4 6 3.5917 1.1926 0.0059 5 6 4.3328 2.4699 0.0054 6 8 3.7271 3.5243 0.0002 7 7 5.6805 2.4671 0.0116 8 6 6.3858 3.6826 0.0116 9 6 5.8183 4.9697 -0.0004 10 7 6.7883 5.8487 0.0079 11 7 8.0085 5.1610 0.0153 12 6 9.2578 5.7310 0.0195 13 1 10.1373 5.1043 0.0255 14 6 9.3904 7.1145 0.0170 15 7 8.3212 7.8765 0.0101 16 14 11.0898 7.8900 0.0234 17 1 11.5469 8.0923 -1.3750 18 1 11.0335 9.2001 0.7202 19 1 12.0401 6.9939 0.7300 20 6 7.7354 3.8236 0.0170 21 6 4.2860 -0.0198 0.0123 22 6 3.5915 -1.2092 0.0123 23 6 2.2011 -1.2042 0.0058 24 7 1.4987 -2.4150 0.0062 25 6 1.7154 -3.4892 0.7968 26 7 0.8358 -4.3980 0.4664 27 7 0.0782 -3.9723 -0.4792 28 7 0.4124 -2.7722 -0.8119 29 1 -0.3633 -0.0956 -1.0232 30 1 -0.3633 -0.8384 0.5944 31 1 -0.3634 0.9339 0.4289 32 1 1.6550 2.1289 -0.0049 33 1 6.1638 1.6260 0.0161 34 1 4.7619 5.1944 -0.0117 35 1 8.4137 8.8420 0.0079 36 1 8.4610 3.0237 0.0224 37 1 5.3660 -0.0244 0.0165 38 1 4.1275 -2.1467 0.0169 39 1 2.4743 -3.5801 1.5599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139437058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:41 Heat of formation + Delta-G solvation = 207.257432 kcal Electronic energy + Delta-G solvation = -26993.293374 eV Core-core repulsion = 22941.432272 eV Total energy + Delta-G solvation = -4051.861102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.59134 -40.62372 -39.71354 -38.44642 -35.38023 -34.52384 -33.58620 -33.11074 -32.52149 -30.91193 -30.27322 -28.07954 -27.51211 -25.80527 -24.74564 -23.68678 -23.14287 -22.19566 -21.16582 -20.44950 -19.57056 -18.85743 -17.79375 -17.23759 -17.10020 -16.51846 -15.87410 -15.55663 -15.05001 -14.98328 -14.94113 -14.43749 -14.27621 -13.94674 -13.89193 -13.74032 -13.28052 -13.16850 -12.97892 -12.83394 -12.51321 -12.28143 -11.98100 -11.75392 -11.54958 -11.46384 -11.34956 -11.30435 -11.04418 -10.86726 -10.59569 -10.32635 -9.48754 -9.44599 -9.28014 -9.18851 -8.91503 -8.16379 -6.82485 -6.64321 -4.31813 -0.11585 0.73675 0.77821 1.37046 1.86093 2.51157 2.90903 2.99331 3.05039 3.31683 3.33363 3.67204 3.69732 3.78502 4.01287 4.10436 4.29999 4.33915 4.45706 4.49270 4.69187 4.77069 4.85835 4.93813 4.93959 4.99058 5.12469 5.24539 5.34766 5.55534 5.67540 5.69086 5.86534 5.94707 6.13608 6.26295 6.35918 6.76505 6.84550 6.96502 7.12917 7.75943 7.99268 7.99650 8.15232 8.48485 8.67561 9.27196 9.56221 10.31427 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039414 B = 0.001888 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.232434 B =14828.315169 C =15443.810437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.060 4.060 3 C -0.051 4.051 4 C -0.088 4.088 5 C 0.533 3.467 6 O -0.526 6.526 7 N -0.610 5.610 8 C -0.065 4.065 9 C -0.028 4.028 10 N -0.260 5.260 11 N -0.139 5.139 12 C -0.322 4.322 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.767 5.767 16 Si 0.936 3.064 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.263 1.263 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.105 4.105 23 C 0.121 3.879 24 N -0.327 5.327 25 C 0.231 3.769 26 N -0.334 5.334 27 N -0.041 5.041 28 N -0.069 5.069 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.396 0.604 34 H 0.177 0.823 35 H 0.276 0.724 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -18.015 2.202 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.070 4.070 4 C -0.092 4.092 5 C 0.320 3.680 6 O -0.404 6.404 7 N -0.252 5.252 8 C -0.171 4.171 9 C -0.204 4.204 10 N -0.091 5.091 11 N 0.094 4.906 12 C -0.454 4.454 13 H 0.135 0.865 14 C -0.172 4.172 15 N -0.394 5.394 16 Si 0.759 3.241 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.188 1.188 20 C -0.234 4.234 21 C -0.102 4.102 22 C -0.125 4.125 23 C 0.030 3.970 24 N -0.118 5.118 25 C -0.066 4.066 26 N -0.183 5.183 27 N -0.036 5.036 28 N -0.054 5.054 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.231 0.769 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.546 -16.318 1.462 18.478 hybrid contribution 1.738 -0.653 0.430 1.906 sum -6.808 -16.971 1.891 18.383 Atomic orbital electron populations 1.20844 0.89420 1.03197 1.03706 1.19776 0.97208 0.90665 0.98564 1.21164 0.92708 0.97933 0.95202 1.20332 0.94373 0.93649 1.00870 1.17857 0.82037 0.88273 0.79874 1.90707 1.67940 1.31710 1.50067 1.42386 1.05136 1.07659 1.69988 1.17228 0.90068 0.85233 1.24560 1.24145 0.99885 0.88886 1.07474 1.78286 0.87222 1.17880 1.25742 1.44583 1.05609 1.01835 1.38610 1.19903 0.80808 0.91406 1.53319 0.86502 1.25663 0.99757 0.96343 0.95419 1.70211 1.28717 1.05605 1.34817 0.85811 0.80279 0.78944 0.79040 1.19531 1.20022 1.18763 1.21250 0.94084 0.88080 1.19991 1.21218 1.00530 0.90546 0.97932 1.20892 0.90728 0.99727 1.01199 1.17431 0.90243 0.81556 1.07790 1.48933 1.24300 1.12681 1.25849 1.27577 0.99757 0.82921 0.96393 1.74484 1.05888 1.26216 1.11663 1.78096 1.16845 1.02445 1.06190 1.82779 0.99847 1.09464 1.13331 0.89563 0.91936 0.90264 0.82915 0.76945 0.80624 0.91332 0.83603 0.83934 0.84220 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.88 36.01 0.32 -0.62 16 2 C -0.06 -0.54 5.89 -104.51 -0.62 -1.16 16 3 C -0.05 -0.53 9.21 -39.22 -0.36 -0.89 16 4 C -0.09 -0.98 5.87 -104.96 -0.62 -1.60 16 5 C 0.53 8.43 7.74 -12.41 -0.10 8.33 16 6 O -0.53 -10.39 13.48 5.28 0.07 -10.32 16 7 N -0.61 -9.71 5.41 -10.90 -0.06 -9.77 16 8 C -0.07 -1.41 6.90 -83.86 -0.58 -1.99 16 9 C -0.03 -0.71 10.85 -17.03 -0.18 -0.90 16 10 N -0.26 -7.31 10.40 30.81 0.32 -6.99 16 11 N -0.14 -3.67 3.74 -11.41 -0.04 -3.71 16 12 C -0.32 -8.19 10.25 -14.82 -0.15 -8.34 16 13 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 14 C 0.05 1.14 5.50 -17.50 -0.10 1.05 16 15 N -0.77 -20.83 11.81 55.49 0.66 -20.18 16 16 Si 0.94 18.26 29.55 -169.99 -5.02 13.24 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 C -0.08 -1.83 11.49 -16.39 -0.19 -2.02 16 21 C -0.08 -0.64 9.53 -39.22 -0.37 -1.01 16 22 C -0.10 -0.68 9.65 -39.47 -0.38 -1.06 16 23 C 0.12 1.00 6.31 -83.56 -0.53 0.47 16 24 N -0.33 -2.81 3.14 -11.70 -0.04 -2.85 16 25 C 0.23 1.56 12.52 -90.12 -1.13 0.43 16 26 N -0.33 -3.38 12.15 29.65 0.36 -3.02 16 27 N -0.04 -0.48 13.39 60.35 0.81 0.33 16 28 N -0.07 -0.77 12.33 60.35 0.74 -0.03 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.54 7.19 -51.93 -0.37 0.17 16 31 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 33 H 0.40 4.54 6.85 -40.82 -0.28 4.26 16 34 H 0.18 4.37 5.92 -52.48 -0.31 4.06 16 35 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.15 2.63 8.06 -52.48 -0.42 2.20 16 37 H 0.14 0.77 6.40 -52.48 -0.34 0.44 16 38 H 0.14 0.51 8.04 -52.49 -0.42 0.09 16 39 H 0.24 0.36 8.06 -52.48 -0.42 -0.06 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -34.79 347.80 -5.29 -40.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.35 Total: 7.29 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -4.98 Total: -9.30 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 2.75 Total: -46.22 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.79 -5.29 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139437058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.337 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds