Wall clock time and date at job start Tue Mar 31 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37772 * 119.95845 * 2 1 4 4 C 1.39674 * 119.91485 * 179.72025 * 3 2 1 5 5 C 1.47678 * 120.07767 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00286 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.40529 * 120.00385 * 180.02562 * 7 5 4 9 9 C 1.40669 * 126.08212 * 359.69867 * 8 7 5 10 10 N 1.30907 * 108.38849 * 179.81246 * 9 8 7 11 11 N 1.40064 * 108.40797 * 0.43975 * 10 9 8 12 12 C 1.37324 * 126.06373 * 179.71446 * 11 10 9 13 13 H 1.08000 * 119.99814 * 179.97438 * 12 11 10 14 14 C 1.38983 * 120.00224 * 0.02562 * 12 11 10 15 15 N 1.31297 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47287 * 90.00019 * 16 14 12 18 18 H 1.48502 * 109.47323 * 209.99946 * 16 14 12 19 19 H 1.48504 * 109.46923 * 330.00271 * 16 14 12 20 20 C 1.35696 * 126.09070 * 180.02562 * 8 7 5 21 21 C 1.39712 * 119.84097 * 359.97438 * 4 3 2 22 22 C 1.37724 * 119.92254 * 0.02562 * 21 4 3 23 23 C 1.38994 * 119.95919 * 179.72293 * 2 1 3 24 24 N 1.39982 * 119.92098 * 0.25714 * 23 2 1 25 25 C 1.35126 * 127.39590 * 227.14314 * 24 23 2 26 26 N 1.30714 * 107.26784 * 179.97438 * 25 24 23 27 27 N 1.28424 * 110.65360 * 0.02562 * 26 25 24 28 28 N 1.28944 * 110.21234 * 359.70194 * 27 26 25 29 29 H 1.09000 * 109.47076 * 95.33809 * 1 2 3 30 30 H 1.09000 * 109.46901 * 215.33550 * 1 2 3 31 31 H 1.09002 * 109.47323 * 335.33349 * 1 2 3 32 32 H 1.07998 * 120.03983 * 359.70201 * 3 2 1 33 33 H 0.97004 * 120.00243 * 0.02562 * 7 5 4 34 34 H 1.08009 * 125.80356 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99962 * 180.02562 * 15 14 12 36 36 H 1.08004 * 126.24517 * 359.97438 * 20 8 7 37 37 H 1.08004 * 120.04008 * 179.97438 * 21 4 3 38 38 H 1.07998 * 119.96174 * 179.97438 * 22 21 4 39 39 H 1.08005 * 126.36691 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1936 0.0000 4 6 3.5917 1.1926 0.0059 5 6 4.3328 2.4699 0.0054 6 8 3.7271 3.5243 0.0002 7 7 5.6805 2.4671 0.0116 8 6 6.3858 3.6826 0.0116 9 6 5.8183 4.9697 -0.0004 10 7 6.7883 5.8487 0.0079 11 7 8.0085 5.1610 0.0153 12 6 9.2578 5.7310 0.0195 13 1 10.1373 5.1043 0.0255 14 6 9.3904 7.1145 0.0170 15 7 8.3212 7.8765 0.0101 16 14 11.0898 7.8900 0.0234 17 1 11.5469 8.0923 -1.3750 18 1 11.0335 9.2001 0.7202 19 1 12.0401 6.9939 0.7300 20 6 7.7354 3.8236 0.0170 21 6 4.2860 -0.0198 0.0123 22 6 3.5915 -1.2092 0.0123 23 6 2.2011 -1.2042 0.0058 24 7 1.4987 -2.4150 0.0062 25 6 1.7154 -3.4892 0.7968 26 7 0.8358 -4.3980 0.4664 27 7 0.0782 -3.9723 -0.4792 28 7 0.4124 -2.7722 -0.8119 29 1 -0.3633 -0.0956 -1.0232 30 1 -0.3633 -0.8384 0.5944 31 1 -0.3634 0.9339 0.4289 32 1 1.6550 2.1289 -0.0049 33 1 6.1638 1.6260 0.0161 34 1 4.7619 5.1944 -0.0117 35 1 8.4137 8.8420 0.0079 36 1 8.4610 3.0237 0.0224 37 1 5.3660 -0.0244 0.0165 38 1 4.1275 -2.1467 0.0169 39 1 2.4743 -3.5801 1.5599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139437058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:40 Heat of formation + Delta-G solvation = 184.145952 kcal Electronic energy + Delta-G solvation = -26994.295563 eV Core-core repulsion = 22941.432272 eV Total energy + Delta-G solvation = -4052.863291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.27892 -41.86910 -41.06284 -39.72116 -36.16037 -36.03034 -35.05952 -34.06600 -33.23308 -32.28449 -31.59521 -29.65469 -28.27211 -27.11607 -26.07885 -24.38013 -24.06145 -22.93190 -22.80775 -21.77961 -21.14652 -19.62197 -19.26154 -18.51685 -17.87724 -17.39529 -17.10521 -16.97722 -16.22326 -16.19351 -15.97084 -15.54797 -15.23533 -15.21316 -14.91347 -14.83720 -14.54039 -14.42125 -14.00591 -13.54043 -13.47742 -13.31004 -13.22167 -13.02338 -12.91293 -12.83749 -12.68166 -12.15127 -12.08305 -12.02097 -11.86680 -11.57254 -11.02260 -10.91048 -10.77644 -10.14316 -10.09128 -9.92425 -8.52931 -8.46143 -6.23333 -0.84617 0.06286 0.09835 0.73964 1.18552 1.26378 1.41278 1.54405 1.58916 1.85380 1.99940 2.23928 2.33863 2.72968 2.89861 3.10738 3.20544 3.42664 3.50991 3.64402 3.70893 3.84894 4.00180 4.13980 4.23631 4.35392 4.43047 4.47730 4.57982 4.61312 4.71393 4.87618 5.00149 5.01617 5.04180 5.06599 5.20341 5.27312 5.30753 5.42921 5.63240 5.96882 6.31282 6.68676 6.74562 7.29584 7.31220 7.47530 7.68887 8.53095 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039414 B = 0.001888 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.232434 B =14828.315169 C =15443.810437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.057 4.057 4 C -0.106 4.106 5 C 0.536 3.464 6 O -0.573 6.573 7 N -0.602 5.602 8 C -0.047 4.047 9 C -0.058 4.058 10 N -0.312 5.312 11 N -0.168 5.168 12 C -0.352 4.352 13 H 0.143 0.857 14 C -0.008 4.008 15 N -0.825 5.825 16 Si 1.018 2.982 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.242 1.242 20 C -0.075 4.075 21 C -0.065 4.065 22 C -0.085 4.085 23 C 0.127 3.873 24 N -0.330 5.330 25 C 0.253 3.747 26 N -0.360 5.360 27 N -0.064 5.064 28 N -0.093 5.093 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.421 0.579 34 H 0.167 0.833 35 H 0.276 0.724 36 H 0.193 0.807 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -21.638 2.839 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.069 4.069 3 C -0.077 4.077 4 C -0.110 4.110 5 C 0.325 3.675 6 O -0.453 6.453 7 N -0.247 5.247 8 C -0.153 4.153 9 C -0.233 4.233 10 N -0.144 5.144 11 N 0.063 4.937 12 C -0.483 4.483 13 H 0.161 0.839 14 C -0.219 4.219 15 N -0.453 5.453 16 Si 0.837 3.163 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.165 1.165 20 C -0.225 4.225 21 C -0.084 4.084 22 C -0.105 4.105 23 C 0.035 3.965 24 N -0.121 5.121 25 C -0.042 4.042 26 N -0.209 5.209 27 N -0.059 5.059 28 N -0.078 5.078 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.260 0.740 34 H 0.184 0.816 35 H 0.085 0.915 36 H 0.210 0.790 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -6.132 -20.023 2.099 21.046 hybrid contribution 0.799 0.232 0.261 0.872 sum -5.333 -19.791 2.360 20.632 Atomic orbital electron populations 1.20804 0.89299 1.03331 1.03409 1.19759 0.97409 0.90720 0.99048 1.21047 0.92727 0.98029 0.95906 1.19943 0.94146 0.92540 1.04360 1.18624 0.81837 0.89448 0.77596 1.90692 1.68877 1.34134 1.51610 1.42251 1.05240 1.06813 1.70402 1.17273 0.90164 0.86117 1.21792 1.24203 0.99324 0.90796 1.09024 1.78175 0.88712 1.20071 1.27439 1.44857 1.05338 1.03188 1.40324 1.20625 0.81388 0.92435 1.53853 0.83932 1.26874 1.04101 0.96733 0.94215 1.70399 1.31682 1.05803 1.37438 0.84606 0.74859 0.77665 0.79182 1.19018 1.20439 1.16539 1.22045 0.95136 0.87802 1.17538 1.21494 1.01930 0.89234 0.95771 1.21261 0.89674 1.00890 0.98689 1.17628 0.91068 0.81016 1.06750 1.48949 1.23969 1.13141 1.26042 1.28578 0.99068 0.81000 0.95592 1.74429 1.06910 1.27668 1.11919 1.78096 1.17777 1.02890 1.07119 1.82752 1.01074 1.09461 1.14537 0.89987 0.92380 0.89647 0.84437 0.73959 0.81604 0.91468 0.79003 0.80870 0.79942 0.69223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.88 71.24 0.63 -1.15 16 2 C -0.07 -1.11 5.89 -19.79 -0.12 -1.23 16 3 C -0.06 -1.16 9.21 22.51 0.21 -0.95 16 4 C -0.11 -2.15 5.87 -20.08 -0.12 -2.27 16 5 C 0.54 16.60 7.74 86.74 0.67 17.27 16 6 O -0.57 -23.50 13.48 -4.02 -0.05 -23.56 16 7 N -0.60 -17.98 5.41 -306.65 -1.66 -19.64 16 8 C -0.05 -2.01 6.90 37.75 0.26 -1.75 16 9 C -0.06 -3.05 10.85 85.42 0.93 -2.12 16 10 N -0.31 -18.33 10.40 -56.45 -0.59 -18.92 16 11 N -0.17 -8.97 3.74 -190.00 -0.71 -9.68 16 12 C -0.35 -17.92 10.25 84.01 0.86 -17.06 16 13 H 0.14 6.19 7.83 -2.91 -0.02 6.17 16 14 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 15 N -0.83 -46.86 11.81 21.66 0.26 -46.61 16 16 Si 1.02 37.44 29.55 68.60 2.03 39.47 16 17 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 19 H -0.24 -7.98 7.11 99.48 0.71 -7.28 16 20 C -0.07 -3.20 11.49 83.38 0.96 -2.24 16 21 C -0.07 -0.70 9.53 22.50 0.21 -0.49 16 22 C -0.09 -0.63 9.65 22.34 0.22 -0.42 16 23 C 0.13 1.63 6.31 38.21 0.24 1.88 16 24 N -0.33 -4.62 3.14 -190.94 -0.60 -5.22 16 25 C 0.25 2.38 12.52 180.17 2.26 4.64 16 26 N -0.36 -6.44 12.15 -60.11 -0.73 -7.17 16 27 N -0.06 -1.44 13.39 37.02 0.50 -0.94 16 28 N -0.09 -1.94 12.33 37.02 0.46 -1.48 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 0.97 7.19 -2.39 -0.02 0.95 16 31 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.14 3.12 7.64 -2.91 -0.02 3.10 16 33 H 0.42 7.96 6.85 -92.71 -0.63 7.32 16 34 H 0.17 8.85 5.92 -2.91 -0.02 8.83 16 35 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.19 6.14 8.06 -2.91 -0.02 6.12 16 37 H 0.17 0.80 6.40 -2.91 -0.02 0.78 16 38 H 0.18 -0.08 8.04 -2.91 -0.02 -0.11 16 39 H 0.29 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -83.87 347.80 7.08 -76.79 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.51 Total: 22.76 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 7.68 Total: -5.81 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -3.08 Total: -109.65 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -83.87 7.08 -76.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139437058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.935 kcal (2) G-P(sol) polarization free energy of solvation -83.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds