Wall clock time and date at job start Tue Mar 31 2020 22:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47061 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47430 * 59.99671 * 3 2 1 7 7 C 1.38981 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99998 * 359.72332 * 7 2 1 10 10 C 1.36489 * 126.07095 * 180.27909 * 9 7 2 11 11 C 1.35687 * 107.50893 * 180.02562 * 10 9 7 12 12 N 1.40585 * 126.08190 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99909 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00229 * 359.97438 * 13 12 11 15 15 C 1.50708 * 119.99829 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.46757 * 179.97438 * 15 13 12 17 17 C 1.38269 * 119.93678 * 269.72425 * 16 15 13 18 18 C 1.38129 * 120.06548 * 179.72957 * 17 16 15 19 19 C 1.38821 * 119.93069 * 0.56902 * 18 17 16 20 20 N 1.40261 * 120.06174 * 179.68744 * 19 18 17 21 21 C 1.35067 * 127.38966 * 359.72085 * 20 19 18 22 22 N 1.30738 * 107.27672 * 179.90417 * 21 20 19 23 23 N 1.28423 * 110.64450 * 0.38357 * 22 21 20 24 24 N 1.28945 * 110.20259 * 359.76133 * 23 22 21 25 25 C 1.38814 * 119.87240 * 359.70322 * 19 18 17 26 26 C 1.38119 * 119.93656 * 0.02562 * 25 19 18 27 27 C 1.40645 * 107.83435 * 359.97438 * 11 10 9 28 28 N 1.30914 * 108.39140 * 359.71449 * 27 11 10 29 29 H 0.97009 * 120.00129 * 0.02562 * 1 2 3 30 30 H 1.07999 * 126.24406 * 359.96636 * 10 9 7 31 31 H 0.97006 * 120.00195 * 359.97438 * 12 11 10 32 32 H 1.09000 * 109.46986 * 299.99320 * 15 13 12 33 33 H 1.08999 * 109.47069 * 59.99780 * 15 13 12 34 34 H 1.07996 * 119.96877 * 0.02562 * 17 16 15 35 35 H 1.08000 * 120.03540 * 180.30135 * 18 17 16 36 36 H 1.08006 * 126.36254 * 0.02562 * 21 20 19 37 37 H 1.07998 * 120.03267 * 180.02562 * 25 19 18 38 38 H 1.07993 * 119.97125 * 179.97438 * 26 25 19 39 39 H 1.07999 * 125.80591 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3213 -2.3929 0.0047 10 6 1.8749 -3.6404 0.0102 11 6 0.8577 -4.5384 0.0135 12 7 0.9890 -5.9381 0.0190 13 6 -0.1102 -6.7180 0.0213 14 8 -1.2127 -6.2123 0.0192 15 6 0.0305 -8.2185 0.0266 16 6 -1.3372 -8.8512 0.0290 17 6 -1.9609 -9.1420 1.2283 18 6 -3.2169 -9.7168 1.2336 19 6 -3.8480 -10.0134 0.0332 20 7 -5.1206 -10.6032 0.0354 21 6 -5.8624 -10.9489 1.1098 22 7 -6.9781 -11.4628 0.6622 23 7 -6.9889 -11.4728 -0.6220 24 7 -5.8950 -10.9670 -1.0804 25 6 -3.2169 -9.7256 -1.1693 26 6 -1.9634 -9.1456 -1.1683 27 6 -0.3513 -3.8198 0.0106 28 7 -0.0716 -2.5409 0.0118 29 1 -0.4851 0.8401 -0.0004 30 1 2.9301 -3.8707 0.0107 31 1 1.8707 -6.3426 0.0203 32 1 0.5762 -8.5354 -0.8622 33 1 0.5758 -8.5292 0.9178 34 1 -1.4676 -8.9150 2.1618 35 1 -3.7057 -9.9392 2.1706 36 1 -5.5862 -10.8224 2.1463 37 1 -3.7057 -9.9549 -2.1046 38 1 -1.4718 -8.9218 -2.1035 39 1 -1.3419 -4.2499 0.0117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139444991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:04 Heat of formation + Delta-G solvation = 203.993146 kcal Electronic energy + Delta-G solvation = -26733.806095 eV Core-core repulsion = 22681.803444 eV Total energy + Delta-G solvation = -4052.002652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50185 -40.34245 -39.70212 -38.51634 -35.68362 -34.26207 -33.22780 -32.69652 -32.17991 -31.43407 -30.28809 -28.57973 -27.28231 -25.11585 -24.47692 -24.30716 -22.14324 -22.04150 -21.05772 -20.26861 -19.46942 -19.01405 -17.61244 -16.91594 -16.62584 -16.53692 -16.05455 -15.92597 -15.49893 -15.07751 -14.71165 -14.56183 -14.07991 -13.93994 -13.79323 -13.57837 -13.30802 -13.27725 -12.96942 -12.81213 -12.19063 -12.02556 -11.73104 -11.65426 -11.47830 -11.45991 -11.33725 -11.30437 -10.98528 -10.83348 -10.54531 -10.23109 -9.43447 -9.35239 -9.22329 -8.87310 -8.79032 -8.11318 -6.76323 -6.60259 -4.27834 0.00110 0.92881 1.29464 1.43362 1.93955 2.74203 2.97878 3.01606 3.07844 3.18458 3.62171 3.63783 3.68653 3.86301 3.88826 4.33323 4.34366 4.38005 4.49277 4.53533 4.70459 4.91090 4.95285 4.98123 5.02023 5.12285 5.19806 5.27156 5.30961 5.57503 5.73039 5.83399 6.04035 6.17179 6.18418 6.39262 6.47054 6.84359 6.90135 7.05376 7.18855 7.81189 8.06023 8.10294 8.22674 8.57477 8.77968 9.32837 9.61977 10.35710 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.001885 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.579581 B =14852.081306 C =15541.857359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.062 4.062 12 N -0.624 5.624 13 C 0.497 3.503 14 O -0.529 6.529 15 C -0.104 4.104 16 C -0.042 4.042 17 C -0.081 4.081 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.320 5.320 21 C 0.224 3.776 22 N -0.333 5.333 23 N -0.039 5.039 24 N -0.077 5.077 25 C -0.097 4.097 26 C -0.082 4.082 27 C -0.033 4.033 28 N -0.261 5.261 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.239 0.761 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -19.736 3.015 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.167 4.167 12 N -0.266 5.266 13 C 0.283 3.717 14 O -0.405 6.405 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.099 4.099 18 C -0.137 4.137 19 C 0.026 3.974 20 N -0.109 5.109 21 C -0.073 4.073 22 N -0.182 5.182 23 N -0.034 5.034 24 N -0.062 5.062 25 C -0.117 4.117 26 C -0.101 4.101 27 C -0.208 4.208 28 N -0.092 5.092 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.230 0.770 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.255 0.745 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.365 -18.474 1.997 18.632 hybrid contribution 2.022 0.082 0.632 2.120 sum 0.657 -18.392 2.630 18.591 Atomic orbital electron populations 1.70226 1.06137 1.27925 1.35295 1.25650 0.95715 1.00311 0.95483 0.85764 0.79623 0.80251 0.78514 1.18674 1.19889 1.19904 1.19921 0.91677 0.80538 1.53412 0.86553 1.44568 1.04052 1.03337 1.39040 1.21264 0.96828 0.85403 1.20018 1.17258 0.94249 0.81272 1.23950 1.42501 1.08158 1.04586 1.71388 1.20133 0.84716 0.87976 0.78902 1.90640 1.25724 1.74782 1.49391 1.20703 0.95161 0.92978 1.05553 1.19527 0.95657 0.95955 0.93215 1.20873 0.93730 0.96901 0.98427 1.20773 0.96087 1.01350 0.95502 1.17564 0.81807 1.01860 0.96197 1.49094 1.14726 1.41280 1.05849 1.27426 0.87956 0.94960 0.96941 1.74480 1.19079 1.21233 1.03387 1.78079 1.11971 1.10458 1.02881 1.82669 0.99596 1.16431 1.07544 1.20897 0.95268 0.98894 0.96622 1.20979 0.93918 0.96721 0.98467 1.24102 0.98010 0.90758 1.07966 1.78272 0.90129 1.15115 1.25690 0.91478 0.83730 0.76996 0.87730 0.87735 0.84345 0.84783 0.74505 0.84170 0.84451 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.25 11.81 55.49 0.66 -20.59 16 2 C 0.05 1.16 5.50 -17.51 -0.10 1.06 16 3 Si 0.93 18.58 29.55 -169.99 -5.02 13.56 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.32 -8.37 10.25 -14.82 -0.15 -8.52 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 11 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 12 N -0.62 -9.68 5.47 -10.00 -0.05 -9.74 16 13 C 0.50 7.27 7.79 -10.98 -0.09 7.18 16 14 O -0.53 -10.16 13.19 5.54 0.07 -10.09 16 15 C -0.10 -0.88 5.83 -29.03 -0.17 -1.05 16 16 C -0.04 -0.39 4.37 -104.59 -0.46 -0.85 16 17 C -0.08 -0.66 9.69 -39.61 -0.38 -1.05 16 18 C -0.12 -0.88 9.49 -39.41 -0.37 -1.26 16 19 C 0.12 1.12 6.70 -83.57 -0.56 0.56 16 20 N -0.32 -3.29 3.85 -11.74 -0.05 -3.33 16 21 C 0.22 1.86 12.16 -90.15 -1.10 0.77 16 22 N -0.33 -3.86 12.15 29.64 0.36 -3.50 16 23 N -0.04 -0.52 13.39 60.35 0.81 0.29 16 24 N -0.08 -0.98 13.34 60.35 0.80 -0.18 16 25 C -0.10 -0.95 9.70 -39.41 -0.38 -1.33 16 26 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 27 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 28 N -0.26 -7.44 10.40 30.80 0.32 -7.12 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 32 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.57 6.88 -52.49 -0.36 0.21 16 36 H 0.24 0.66 7.19 -52.48 -0.38 0.28 16 37 H 0.14 1.33 7.77 -52.49 -0.41 0.92 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.18 4.41 5.92 -52.49 -0.31 4.10 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -36.88 351.69 -5.41 -42.29 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.47 Total: 7.63 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -5.09 Total: -10.66 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 2.81 Total: -48.04 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.88 -5.41 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139444991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.281 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds