Wall clock time and date at job start Tue Mar 31 2020 22:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47061 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47430 * 59.99671 * 3 2 1 7 7 C 1.38981 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99998 * 359.72332 * 7 2 1 10 10 C 1.36489 * 126.07095 * 180.27909 * 9 7 2 11 11 C 1.35687 * 107.50893 * 180.02562 * 10 9 7 12 12 N 1.40585 * 126.08190 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99909 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00229 * 359.97438 * 13 12 11 15 15 C 1.50708 * 119.99829 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.46757 * 179.97438 * 15 13 12 17 17 C 1.38269 * 119.93678 * 269.72425 * 16 15 13 18 18 C 1.38129 * 120.06548 * 179.72957 * 17 16 15 19 19 C 1.38821 * 119.93069 * 0.56902 * 18 17 16 20 20 N 1.40261 * 120.06174 * 179.68744 * 19 18 17 21 21 C 1.35067 * 127.38966 * 359.72085 * 20 19 18 22 22 N 1.30738 * 107.27672 * 179.90417 * 21 20 19 23 23 N 1.28423 * 110.64450 * 0.38357 * 22 21 20 24 24 N 1.28945 * 110.20259 * 359.76133 * 23 22 21 25 25 C 1.38814 * 119.87240 * 359.70322 * 19 18 17 26 26 C 1.38119 * 119.93656 * 0.02562 * 25 19 18 27 27 C 1.40645 * 107.83435 * 359.97438 * 11 10 9 28 28 N 1.30914 * 108.39140 * 359.71449 * 27 11 10 29 29 H 0.97009 * 120.00129 * 0.02562 * 1 2 3 30 30 H 1.07999 * 126.24406 * 359.96636 * 10 9 7 31 31 H 0.97006 * 120.00195 * 359.97438 * 12 11 10 32 32 H 1.09000 * 109.46986 * 299.99320 * 15 13 12 33 33 H 1.08999 * 109.47069 * 59.99780 * 15 13 12 34 34 H 1.07996 * 119.96877 * 0.02562 * 17 16 15 35 35 H 1.08000 * 120.03540 * 180.30135 * 18 17 16 36 36 H 1.08006 * 126.36254 * 0.02562 * 21 20 19 37 37 H 1.07998 * 120.03267 * 180.02562 * 25 19 18 38 38 H 1.07993 * 119.97125 * 179.97438 * 26 25 19 39 39 H 1.07999 * 125.80591 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3213 -2.3929 0.0047 10 6 1.8749 -3.6404 0.0102 11 6 0.8577 -4.5384 0.0135 12 7 0.9890 -5.9381 0.0190 13 6 -0.1102 -6.7180 0.0213 14 8 -1.2127 -6.2123 0.0192 15 6 0.0305 -8.2185 0.0266 16 6 -1.3372 -8.8512 0.0290 17 6 -1.9609 -9.1420 1.2283 18 6 -3.2169 -9.7168 1.2336 19 6 -3.8480 -10.0134 0.0332 20 7 -5.1206 -10.6032 0.0354 21 6 -5.8624 -10.9489 1.1098 22 7 -6.9781 -11.4628 0.6622 23 7 -6.9889 -11.4728 -0.6220 24 7 -5.8950 -10.9670 -1.0804 25 6 -3.2169 -9.7256 -1.1693 26 6 -1.9634 -9.1456 -1.1683 27 6 -0.3513 -3.8198 0.0106 28 7 -0.0716 -2.5409 0.0118 29 1 -0.4851 0.8401 -0.0004 30 1 2.9301 -3.8707 0.0107 31 1 1.8707 -6.3426 0.0203 32 1 0.5762 -8.5354 -0.8622 33 1 0.5758 -8.5292 0.9178 34 1 -1.4676 -8.9150 2.1618 35 1 -3.7057 -9.9392 2.1706 36 1 -5.5862 -10.8224 2.1463 37 1 -3.7057 -9.9549 -2.1046 38 1 -1.4718 -8.9218 -2.1035 39 1 -1.3419 -4.2499 0.0117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139444991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:04 Heat of formation + Delta-G solvation = 178.478040 kcal Electronic energy + Delta-G solvation = -26734.912513 eV Core-core repulsion = 22681.803444 eV Total energy + Delta-G solvation = -4053.109070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.30787 -41.69335 -40.84958 -39.78152 -36.49159 -35.81574 -34.90745 -33.50164 -33.02372 -32.16417 -32.07725 -29.92025 -28.50378 -26.72765 -25.47186 -25.05053 -23.08192 -22.80954 -22.68709 -21.57250 -21.10286 -19.70513 -19.28728 -17.84772 -17.71969 -17.35791 -17.28097 -17.05012 -16.73778 -16.27929 -15.85419 -15.64217 -15.20945 -15.06309 -14.84406 -14.78244 -14.56615 -14.30939 -14.24944 -13.67094 -13.47941 -13.25706 -13.01674 -12.84114 -12.83063 -12.69368 -12.42830 -12.16740 -12.05284 -12.02845 -11.78361 -11.66985 -10.99037 -10.79583 -10.61963 -10.07579 -10.06722 -9.54044 -8.46945 -8.45720 -6.22204 -0.72439 0.29460 0.53993 0.72428 1.15347 1.25105 1.40370 1.58609 1.58952 1.92081 2.08131 2.32886 2.59006 2.70833 3.02775 3.02993 3.10724 3.31135 3.64866 3.74784 3.81535 3.90391 4.15620 4.20602 4.29943 4.38843 4.47370 4.51618 4.66138 4.66328 4.74135 4.96634 5.02686 5.06336 5.15720 5.18187 5.33263 5.38761 5.51855 5.55981 5.82984 5.98970 6.36703 6.77457 6.87070 7.23279 7.47702 7.54675 7.73523 8.53814 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.001885 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.579581 B =14852.081306 C =15541.857359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.017 2.983 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.172 5.172 10 C -0.081 4.081 11 C -0.040 4.040 12 N -0.618 5.618 13 C 0.497 3.503 14 O -0.577 6.577 15 C -0.088 4.088 16 C -0.057 4.057 17 C -0.085 4.085 18 C -0.108 4.108 19 C 0.102 3.898 20 N -0.321 5.321 21 C 0.241 3.759 22 N -0.359 5.359 23 N -0.064 5.064 24 N -0.106 5.106 25 C -0.115 4.115 26 C -0.093 4.093 27 C -0.061 4.061 28 N -0.314 5.314 29 H 0.275 0.725 30 H 0.188 0.812 31 H 0.422 0.578 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.293 0.707 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -21.097 4.678 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.162 1.162 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.231 4.231 11 C -0.146 4.146 12 N -0.264 5.264 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.127 4.127 16 C -0.058 4.058 17 C -0.104 4.104 18 C -0.129 4.129 19 C 0.011 3.989 20 N -0.111 5.111 21 C -0.055 4.055 22 N -0.208 5.208 23 N -0.059 5.059 24 N -0.091 5.091 25 C -0.135 4.135 26 C -0.111 4.111 27 C -0.236 4.236 28 N -0.146 5.146 29 H 0.084 0.916 30 H 0.205 0.795 31 H 0.260 0.740 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.308 0.692 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.726 -19.904 3.655 20.311 hybrid contribution 1.066 0.301 0.154 1.118 sum 2.792 -19.603 3.809 20.164 Atomic orbital electron populations 1.70411 1.08420 1.28873 1.37850 1.26861 0.96456 1.04349 0.94294 0.84558 0.79157 0.74552 0.78080 1.16180 1.19988 1.19906 1.20625 0.92918 0.80935 1.53928 0.84152 1.44835 1.03585 1.04896 1.40821 1.22054 0.98937 0.84189 1.17909 1.17327 0.92363 0.84299 1.20658 1.42511 1.10203 1.01935 1.71702 1.21320 0.83417 0.90424 0.76316 1.90635 1.27730 1.76292 1.50934 1.20735 0.95605 0.87293 1.09042 1.19752 0.96289 0.96270 0.93507 1.21258 0.93919 0.96192 0.99003 1.21192 0.95798 0.99783 0.96130 1.17835 0.81632 1.02489 0.96991 1.49157 1.14965 1.41200 1.05792 1.28433 0.86338 0.92389 0.98322 1.74402 1.20947 1.22591 1.02902 1.78057 1.12560 1.11306 1.03945 1.82611 1.00013 1.17423 1.09094 1.20975 0.95887 0.99815 0.96850 1.21146 0.93854 0.96819 0.99288 1.24164 0.99125 0.90917 1.09431 1.78155 0.92161 1.16898 1.27415 0.91566 0.79466 0.74026 0.84544 0.83754 0.82034 0.81007 0.69227 0.85068 0.83728 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.63 11.81 21.66 0.26 -47.38 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 38.14 29.55 68.60 2.03 40.17 16 4 H -0.24 -7.93 7.11 99.48 0.71 -7.23 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.35 -18.33 10.25 84.01 0.86 -17.47 16 8 H 0.14 6.27 7.83 -2.91 -0.02 6.25 16 9 N -0.17 -9.30 3.74 -190.01 -0.71 -10.01 16 10 C -0.08 -3.51 11.49 83.38 0.96 -2.55 16 11 C -0.04 -1.70 6.90 37.73 0.26 -1.44 16 12 N -0.62 -17.38 5.47 -303.93 -1.66 -19.04 16 13 C 0.50 13.25 7.79 87.66 0.68 13.94 16 14 O -0.58 -21.82 13.19 -3.08 -0.04 -21.86 16 15 C -0.09 -1.10 5.83 29.10 0.17 -0.93 16 16 C -0.06 -0.89 4.37 -19.85 -0.09 -0.98 16 17 C -0.09 -1.10 9.69 22.25 0.22 -0.89 16 18 C -0.11 -1.30 9.49 22.38 0.21 -1.08 16 19 C 0.10 1.80 6.70 38.07 0.26 2.06 16 20 N -0.32 -6.30 3.85 -191.06 -0.74 -7.04 16 21 C 0.24 3.50 12.16 180.19 2.19 5.69 16 22 N -0.36 -8.12 12.15 -60.13 -0.73 -8.85 16 23 N -0.06 -1.75 13.39 37.02 0.50 -1.25 16 24 N -0.11 -2.77 13.34 37.02 0.49 -2.28 16 25 C -0.12 -2.24 9.70 22.38 0.22 -2.02 16 26 C -0.09 -1.62 9.69 22.25 0.22 -1.41 16 27 C -0.06 -3.19 10.85 85.42 0.93 -2.27 16 28 N -0.31 -18.62 10.40 -56.47 -0.59 -19.21 16 29 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 30 H 0.19 6.25 8.06 -2.91 -0.02 6.23 16 31 H 0.42 7.55 8.83 -92.70 -0.82 6.73 16 32 H 0.14 0.94 8.08 -2.39 -0.02 0.93 16 33 H 0.14 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.17 0.60 6.88 -2.91 -0.02 0.58 16 36 H 0.29 0.32 7.19 -2.91 -0.02 0.30 16 37 H 0.13 2.66 7.77 -2.91 -0.02 2.64 16 38 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.17 8.77 5.92 -2.91 -0.02 8.76 16 Total: -1.00 -88.54 351.69 6.67 -81.87 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.32 Total: 24.21 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 7.55 Total: -9.33 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.18 Total: -115.05 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -88.54 6.67 -81.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139444991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.349 kcal (2) G-P(sol) polarization free energy of solvation -88.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds