Wall clock time and date at job start Tue Mar 31 2020 22:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48493 * 109.47328 * 239.99890 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99480 * 3 2 1 7 7 C 1.38983 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.36488 * 126.06943 * 179.97438 * 9 7 2 11 11 C 1.35688 * 107.50788 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.07903 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21307 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00074 * 179.97438 * 13 12 11 16 16 N 1.46495 * 109.47395 * 179.97438 * 15 13 12 17 17 N 1.28733 * 125.33912 * 90.02443 * 16 15 13 18 18 N 1.28984 * 108.94425 * 180.02562 * 17 16 15 19 19 C 1.34049 * 107.26777 * 0.02562 * 18 17 16 20 20 C 1.48467 * 126.67288 * 179.97438 * 19 18 17 21 21 C 1.39294 * 120.11716 * 179.75263 * 20 19 18 22 22 C 1.38030 * 119.88324 * 179.77152 * 21 20 19 23 23 C 1.38314 * 120.11405 * 0.47699 * 22 21 20 24 24 C 1.38316 * 120.23707 * 359.79547 * 23 22 21 25 25 C 1.38025 * 120.12033 * 359.95400 * 24 23 22 26 26 N 1.28876 * 125.34499 * 270.02951 * 16 15 13 27 27 C 1.40645 * 107.83498 * 0.26246 * 11 10 9 28 28 N 1.30911 * 108.38863 * 359.55748 * 27 11 10 29 29 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 30 30 H 1.08007 * 126.24783 * 0.04911 * 10 9 7 31 31 H 0.96999 * 120.00099 * 359.97438 * 12 11 10 32 32 H 1.09006 * 109.46839 * 60.00297 * 15 13 12 33 33 H 1.09005 * 109.47491 * 300.00317 * 15 13 12 34 34 H 1.08004 * 120.05618 * 0.02562 * 21 20 19 35 35 H 1.08002 * 119.94482 * 180.27510 * 22 21 20 36 36 H 1.07999 * 119.87839 * 179.76814 * 23 22 21 37 37 H 1.08007 * 119.93915 * 179.97438 * 24 23 22 38 38 H 1.08001 * 120.06518 * 180.02562 * 25 24 23 39 39 H 1.07997 * 125.80626 * 179.69739 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7464 0.0006 6 1 3.1006 1.6965 1.2126 7 6 2.0078 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6404 0.0005 11 6 0.8577 -4.5384 0.0000 12 7 0.9890 -5.9382 0.0003 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 0.0002 15 6 0.0305 -8.2185 -0.0001 16 7 -1.2990 -8.8337 0.0004 17 7 -1.9751 -9.1467 -1.0495 18 7 -3.0982 -9.6657 -0.6850 19 6 -3.1168 -9.6731 0.6554 20 6 -4.2100 -10.1772 1.5243 21 6 -4.0826 -10.1229 2.9103 22 6 -5.1040 -10.5886 3.7135 23 6 -6.2482 -11.1176 3.1444 24 6 -6.3774 -11.1791 1.7687 25 6 -5.3644 -10.7115 0.9562 26 7 -1.9754 -9.1464 1.0519 27 6 -0.3513 -3.8198 -0.0065 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4850 0.8400 -0.0004 30 1 2.9301 -3.8708 0.0013 31 1 1.8707 -6.3426 0.0006 32 1 0.5760 -8.5324 0.8899 33 1 0.5761 -8.5322 -0.8901 34 1 -3.1880 -9.7133 3.3557 35 1 -5.0081 -10.5429 4.7883 36 1 -7.0434 -11.4844 3.7765 37 1 -7.2729 -11.5936 1.3293 38 1 -5.4664 -10.7596 -0.1179 39 1 -1.3419 -4.2499 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139464662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:02 Heat of formation + Delta-G solvation = 215.592674 kcal Electronic energy + Delta-G solvation = -26870.475725 eV Core-core repulsion = 22818.976067 eV Total energy + Delta-G solvation = -4051.499658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.30924 -40.13290 -39.28777 -38.82467 -35.15801 -34.44233 -33.57735 -33.30691 -31.40189 -31.10632 -30.36324 -29.27054 -27.56408 -25.01830 -24.58285 -23.77781 -22.33714 -21.66872 -21.28784 -20.62068 -19.61911 -18.11342 -18.05325 -17.34942 -17.04634 -16.12674 -15.94276 -15.52162 -15.38551 -15.17183 -15.04371 -14.22566 -14.10151 -13.80145 -13.67752 -13.63453 -13.45600 -13.14797 -12.98055 -12.78425 -12.12454 -11.75727 -11.61698 -11.57268 -11.38198 -11.30270 -11.18231 -11.03281 -10.95404 -10.87787 -10.61209 -10.37861 -9.53937 -9.27390 -9.19310 -8.91656 -8.79749 -8.16690 -6.86240 -6.63110 -4.32122 0.62116 1.16274 1.21633 1.67994 2.36700 2.46632 2.94837 2.99851 3.04904 3.25118 3.53799 3.60777 3.66262 3.78548 4.06271 4.28666 4.45519 4.54127 4.58303 4.72169 4.85395 4.87399 4.90671 4.94817 5.16231 5.34798 5.35621 5.61808 5.70627 5.80244 5.94707 6.12856 6.22217 6.23816 6.27951 6.30069 6.66783 6.69771 6.83595 6.90945 7.12535 7.75309 7.90998 8.13448 8.29069 8.39139 8.63881 9.27476 9.56055 10.32551 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001997 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.512034 B =14014.196909 C =14730.640617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.139 5.139 10 C -0.080 4.080 11 C -0.067 4.067 12 N -0.609 5.609 13 C 0.484 3.516 14 O -0.516 6.516 15 C 0.113 3.887 16 N -0.118 5.118 17 N -0.044 5.044 18 N -0.274 5.274 19 C 0.205 3.795 20 C -0.007 4.007 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.079 4.079 26 N -0.287 5.287 27 C -0.029 4.029 28 N -0.260 5.260 29 H 0.277 0.723 30 H 0.148 0.852 31 H 0.401 0.599 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -20.699 4.569 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.094 4.906 10 C -0.232 4.232 11 C -0.172 4.172 12 N -0.252 5.252 13 C 0.266 3.734 14 O -0.392 6.392 15 C -0.011 4.011 16 N -0.028 5.028 17 N -0.037 5.037 18 N -0.146 5.146 19 C -0.074 4.074 20 C -0.011 4.011 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.100 4.100 26 N -0.137 5.137 27 C -0.204 4.204 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.234 0.766 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.293 -18.788 3.970 19.483 hybrid contribution 1.193 -0.320 0.392 1.296 sum -2.100 -19.108 4.362 19.712 Atomic orbital electron populations 1.70202 1.06182 1.28309 1.34663 1.25671 0.95731 1.00391 0.95395 0.85870 0.79151 0.79484 0.79525 1.19082 1.20077 1.19093 1.19861 0.91694 0.80488 1.53493 0.86496 1.44585 1.04083 1.03369 1.38532 1.21236 0.96811 0.85267 1.19843 1.17177 0.94448 0.80514 1.25069 1.42210 1.07601 1.04824 1.70589 1.19890 0.85629 0.87299 0.80537 1.90731 1.25565 1.73840 1.49026 1.22008 0.77387 0.92870 1.08882 1.49282 1.15595 1.37101 1.00871 1.78920 0.99594 1.11190 1.14032 1.75983 1.11072 1.17097 1.10463 1.23537 0.93291 1.00814 0.89772 1.17280 0.91062 1.01525 0.91192 1.21229 0.99497 0.97596 0.91844 1.21099 0.93629 0.99304 1.00071 1.21320 0.97679 0.98306 0.95162 1.21097 0.98898 1.00518 0.93608 1.21217 0.91859 0.95954 1.00922 1.74845 1.06373 1.17659 1.14817 1.24087 0.97932 0.90833 1.07553 1.78304 0.90072 1.14938 1.25771 0.91256 0.83477 0.76552 0.83861 0.83639 0.84920 0.85340 0.85678 0.85309 0.84676 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.25 11.81 55.49 0.66 -20.59 16 2 C 0.05 1.16 5.50 -17.51 -0.10 1.07 16 3 Si 0.94 18.55 29.55 -169.99 -5.02 13.53 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.33 10.25 -14.82 -0.15 -8.49 16 8 H 0.12 2.66 7.83 -52.48 -0.41 2.25 16 9 N -0.14 -3.71 3.74 -11.41 -0.04 -3.76 16 10 C -0.08 -1.79 11.49 -16.39 -0.19 -1.98 16 11 C -0.07 -1.45 6.90 -83.84 -0.58 -2.03 16 12 N -0.61 -9.44 5.47 -10.00 -0.05 -9.49 16 13 C 0.48 7.64 7.87 -10.99 -0.09 7.55 16 14 O -0.52 -11.01 13.58 5.53 0.08 -10.93 16 15 C 0.11 1.16 7.08 -5.20 -0.04 1.12 16 16 N -0.12 -1.69 3.48 -11.68 -0.04 -1.73 16 17 N -0.04 -0.71 13.23 60.35 0.80 0.09 16 18 N -0.27 -4.42 12.23 32.16 0.39 -4.03 16 19 C 0.21 3.09 7.94 -156.30 -1.24 1.85 16 20 C -0.01 -0.09 5.88 -104.89 -0.62 -0.71 16 21 C -0.08 -0.88 9.70 -39.27 -0.38 -1.26 16 22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 23 C -0.11 -0.82 10.04 -39.52 -0.40 -1.21 16 24 C -0.12 -1.03 10.03 -39.63 -0.40 -1.42 16 25 C -0.08 -0.84 9.70 -39.26 -0.38 -1.22 16 26 N -0.29 -4.33 11.85 32.17 0.38 -3.95 16 27 C -0.03 -0.74 10.85 -17.04 -0.18 -0.93 16 28 N -0.26 -7.48 10.40 30.80 0.32 -7.16 16 29 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.15 2.66 8.06 -52.48 -0.42 2.24 16 31 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 32 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.13 1.39 7.88 -52.48 -0.41 0.98 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.14 1.38 7.89 -52.49 -0.41 0.96 16 39 H 0.17 4.55 5.92 -52.49 -0.31 4.24 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -37.31 355.10 -5.90 -43.21 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.58 Total: 8.58 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -5.13 Total: -9.12 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 2.41 Total: -50.62 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.31 -5.90 -43.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139464662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.804 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds