Wall clock time and date at job start Tue Mar 31 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48493 * 109.47328 * 239.99890 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99480 * 3 2 1 7 7 C 1.38983 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.36488 * 126.06943 * 179.97438 * 9 7 2 11 11 C 1.35688 * 107.50788 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.07903 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21307 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00074 * 179.97438 * 13 12 11 16 16 N 1.46495 * 109.47395 * 179.97438 * 15 13 12 17 17 N 1.28733 * 125.33912 * 90.02443 * 16 15 13 18 18 N 1.28984 * 108.94425 * 180.02562 * 17 16 15 19 19 C 1.34049 * 107.26777 * 0.02562 * 18 17 16 20 20 C 1.48467 * 126.67288 * 179.97438 * 19 18 17 21 21 C 1.39294 * 120.11716 * 179.75263 * 20 19 18 22 22 C 1.38030 * 119.88324 * 179.77152 * 21 20 19 23 23 C 1.38314 * 120.11405 * 0.47699 * 22 21 20 24 24 C 1.38316 * 120.23707 * 359.79547 * 23 22 21 25 25 C 1.38025 * 120.12033 * 359.95400 * 24 23 22 26 26 N 1.28876 * 125.34499 * 270.02951 * 16 15 13 27 27 C 1.40645 * 107.83498 * 0.26246 * 11 10 9 28 28 N 1.30911 * 108.38863 * 359.55748 * 27 11 10 29 29 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 30 30 H 1.08007 * 126.24783 * 0.04911 * 10 9 7 31 31 H 0.96999 * 120.00099 * 359.97438 * 12 11 10 32 32 H 1.09006 * 109.46839 * 60.00297 * 15 13 12 33 33 H 1.09005 * 109.47491 * 300.00317 * 15 13 12 34 34 H 1.08004 * 120.05618 * 0.02562 * 21 20 19 35 35 H 1.08002 * 119.94482 * 180.27510 * 22 21 20 36 36 H 1.07999 * 119.87839 * 179.76814 * 23 22 21 37 37 H 1.08007 * 119.93915 * 179.97438 * 24 23 22 38 38 H 1.08001 * 120.06518 * 180.02562 * 25 24 23 39 39 H 1.07997 * 125.80626 * 179.69739 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7464 0.0006 6 1 3.1006 1.6965 1.2126 7 6 2.0078 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6404 0.0005 11 6 0.8577 -4.5384 0.0000 12 7 0.9890 -5.9382 0.0003 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 0.0002 15 6 0.0305 -8.2185 -0.0001 16 7 -1.2990 -8.8337 0.0004 17 7 -1.9751 -9.1467 -1.0495 18 7 -3.0982 -9.6657 -0.6850 19 6 -3.1168 -9.6731 0.6554 20 6 -4.2100 -10.1772 1.5243 21 6 -4.0826 -10.1229 2.9103 22 6 -5.1040 -10.5886 3.7135 23 6 -6.2482 -11.1176 3.1444 24 6 -6.3774 -11.1791 1.7687 25 6 -5.3644 -10.7115 0.9562 26 7 -1.9754 -9.1464 1.0519 27 6 -0.3513 -3.8198 -0.0065 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4850 0.8400 -0.0004 30 1 2.9301 -3.8708 0.0013 31 1 1.8707 -6.3426 0.0006 32 1 0.5760 -8.5324 0.8899 33 1 0.5761 -8.5322 -0.8901 34 1 -3.1880 -9.7133 3.3557 35 1 -5.0081 -10.5429 4.7883 36 1 -7.0434 -11.4844 3.7765 37 1 -7.2729 -11.5936 1.3293 38 1 -5.4664 -10.7596 -0.1179 39 1 -1.3419 -4.2499 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139464662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:01 Heat of formation + Delta-G solvation = 188.292272 kcal Electronic energy + Delta-G solvation = -26871.659560 eV Core-core repulsion = 22818.976067 eV Total energy + Delta-G solvation = -4052.683493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.41144 -41.80725 -40.45254 -39.97403 -36.32194 -35.96857 -35.07366 -34.62402 -32.44751 -32.10815 -31.84344 -30.51583 -29.13317 -26.83146 -25.54976 -24.89218 -23.28594 -22.89676 -22.54283 -22.08731 -21.32859 -19.60222 -19.11216 -18.76131 -17.98924 -17.49193 -17.27294 -16.81462 -16.75695 -16.44416 -15.85014 -15.74724 -15.28928 -15.10973 -15.02831 -14.82821 -14.69542 -14.33310 -13.93585 -13.84709 -13.50680 -13.36296 -13.13329 -12.91206 -12.88124 -12.37866 -12.31649 -12.23080 -12.15888 -11.95313 -11.92749 -11.88071 -11.06043 -10.96943 -10.82498 -10.14917 -9.90937 -9.62957 -8.60964 -8.49254 -6.27956 -0.27199 0.12294 0.45040 0.72673 1.09344 1.37207 1.38945 1.41383 1.55524 1.81241 1.96789 2.19203 2.42076 2.64963 2.82058 2.89178 3.07182 3.11136 3.56329 3.79439 3.90884 4.05552 4.10087 4.20172 4.36291 4.40352 4.54408 4.55159 4.55947 4.65212 4.87983 4.96162 4.97285 5.03691 5.11820 5.25380 5.33201 5.50201 5.50779 5.55981 5.92575 5.99304 6.24071 6.54961 6.69778 7.15936 7.19982 7.43405 7.63517 8.49777 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001997 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.512034 B =14014.196909 C =14730.640617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.353 4.353 8 H 0.145 0.855 9 N -0.167 5.167 10 C -0.071 4.071 11 C -0.047 4.047 12 N -0.595 5.595 13 C 0.485 3.515 14 O -0.576 6.576 15 C 0.117 3.883 16 N -0.116 5.116 17 N -0.062 5.062 18 N -0.297 5.297 19 C 0.201 3.799 20 C -0.040 4.040 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.092 4.092 26 N -0.300 5.300 27 C -0.061 4.061 28 N -0.314 5.314 29 H 0.276 0.724 30 H 0.196 0.804 31 H 0.431 0.569 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -22.619 5.648 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.484 4.484 8 H 0.163 0.837 9 N 0.064 4.936 10 C -0.222 4.222 11 C -0.153 4.153 12 N -0.241 5.241 13 C 0.270 3.730 14 O -0.454 6.454 15 C -0.006 4.006 16 N -0.028 5.028 17 N -0.055 5.055 18 N -0.169 5.169 19 C -0.079 4.079 20 C -0.043 4.043 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.112 4.112 26 N -0.150 5.150 27 C -0.236 4.236 28 N -0.146 5.146 29 H 0.085 0.915 30 H 0.213 0.787 31 H 0.270 0.730 32 H 0.209 0.791 33 H 0.212 0.788 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.283 -20.776 5.042 21.418 hybrid contribution 0.522 0.061 0.109 0.537 sum -0.761 -20.715 5.151 21.359 Atomic orbital electron populations 1.70402 1.08538 1.29183 1.37321 1.26924 0.96442 1.04541 0.94117 0.84644 0.77515 0.73621 0.80393 1.17576 1.20604 1.17539 1.20628 0.93065 0.80778 1.53900 0.83735 1.44875 1.03525 1.05050 1.40129 1.22069 0.98999 0.83836 1.17246 1.17212 0.92545 0.83476 1.22053 1.42054 1.09486 1.02223 1.70371 1.20869 0.84449 0.89639 0.78006 1.90731 1.28013 1.75587 1.51117 1.22485 0.76440 0.87948 1.13680 1.49633 1.16339 1.36541 1.00328 1.78821 0.99995 1.11824 1.14816 1.75932 1.11522 1.18097 1.11310 1.24088 0.93852 1.00194 0.89729 1.17523 0.91396 1.03634 0.91773 1.21327 1.00323 0.98330 0.91441 1.21445 0.93112 0.98303 1.01209 1.21762 0.97961 0.96602 0.95251 1.21452 0.98959 0.99511 0.93964 1.21334 0.92188 0.96542 1.01154 1.74816 1.06747 1.18243 1.15177 1.24067 0.98936 0.91192 1.09387 1.78191 0.92286 1.16529 1.27558 0.91451 0.78666 0.73007 0.79059 0.78779 0.85416 0.82797 0.82266 0.82586 0.85202 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.93 11.81 21.66 0.26 -47.67 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 38.08 29.55 68.60 2.03 40.10 16 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 7 C -0.35 -18.23 10.25 84.01 0.86 -17.36 16 8 H 0.15 6.33 7.83 -2.91 -0.02 6.31 16 9 N -0.17 -9.06 3.74 -190.00 -0.71 -9.77 16 10 C -0.07 -3.07 11.49 83.38 0.96 -2.11 16 11 C -0.05 -2.01 6.90 37.73 0.26 -1.74 16 12 N -0.60 -17.03 5.47 -303.92 -1.66 -18.69 16 13 C 0.49 14.65 7.87 87.66 0.69 15.34 16 14 O -0.58 -25.18 13.58 -3.11 -0.04 -25.23 16 15 C 0.12 2.03 7.08 85.63 0.61 2.64 16 16 N -0.12 -3.24 3.48 -190.85 -0.66 -3.90 16 17 N -0.06 -1.97 13.23 37.02 0.49 -1.48 16 18 N -0.30 -9.89 12.23 -52.18 -0.64 -10.53 16 19 C 0.20 6.21 7.94 137.38 1.09 7.30 16 20 C -0.04 -1.02 5.88 -20.04 -0.12 -1.14 16 21 C -0.09 -2.01 9.70 22.47 0.22 -1.80 16 22 C -0.12 -1.86 10.03 22.24 0.22 -1.64 16 23 C -0.10 -1.23 10.04 22.31 0.22 -1.00 16 24 C -0.12 -1.79 10.03 22.24 0.22 -1.57 16 25 C -0.09 -1.96 9.70 22.48 0.22 -1.74 16 26 N -0.30 -9.04 11.85 -52.13 -0.62 -9.65 16 27 C -0.06 -3.29 10.85 85.42 0.93 -2.37 16 28 N -0.31 -18.92 10.40 -56.47 -0.59 -19.51 16 29 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 31 H 0.43 7.04 8.83 -92.71 -0.82 6.22 16 32 H 0.19 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.20 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.13 2.74 7.88 -2.91 -0.02 2.71 16 35 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.13 2.78 7.89 -2.91 -0.02 2.76 16 39 H 0.16 8.88 5.92 -2.91 -0.02 8.87 16 Total: -1.00 -90.47 355.10 5.01 -85.46 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.31 Total: 28.05 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.85 Total: -7.18 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -4.13 Total: -121.21 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.23 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.10 kcal Total: -90.47 5.01 -85.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139464662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.748 kcal (2) G-P(sol) polarization free energy of solvation -90.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds