Wall clock time and date at job start Tue Mar 31 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 N 1.46504 * 109.46919 * 120.00328 * 2 1 3 5 5 C 1.34939 * 126.03518 * 274.99456 * 4 2 1 6 6 C 1.35315 * 107.74580 * 180.02562 * 5 4 2 7 7 S 1.76202 * 126.04159 * 179.73526 * 6 5 4 8 8 O 1.42105 * 106.40268 * 203.53982 * 7 6 5 9 9 O 1.42097 * 106.40335 * 336.46460 * 7 6 5 10 10 N 1.65603 * 107.21593 * 90.00478 * 7 6 5 11 11 C 1.39994 * 119.99755 * 64.99903 * 10 7 6 12 12 C 1.40420 * 125.97208 * 179.71449 * 11 10 7 13 13 C 1.35253 * 107.86220 * 179.82825 * 12 11 10 14 14 N 1.34955 * 107.86124 * 0.43152 * 13 12 11 15 15 C 1.46502 * 125.97333 * 179.72414 * 14 13 12 16 16 C 1.50698 * 109.46907 * 124.97813 * 15 14 13 17 17 H 1.08000 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46944 * 119.99704 * 20 18 16 23 23 H 1.48501 * 109.46787 * 239.99566 * 20 18 16 24 24 N 1.31225 * 125.97762 * 0.02608 * 11 10 7 25 25 C 1.39870 * 107.92072 * 0.02562 * 6 5 4 26 26 N 1.30839 * 108.20307 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47263 * 299.99521 * 1 2 3 29 29 H 1.09005 * 109.47445 * 59.99725 * 1 2 3 30 30 H 1.09005 * 109.46624 * 240.00191 * 2 1 3 31 31 H 1.08996 * 109.46907 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47063 * 300.00317 * 3 2 1 33 33 H 1.09000 * 109.46678 * 60.00121 * 3 2 1 34 34 H 1.07999 * 126.13245 * 0.04834 * 5 4 2 35 35 H 0.96991 * 119.99973 * 244.99824 * 10 7 6 36 36 H 1.08004 * 126.07012 * 359.96999 * 12 11 10 37 37 H 1.07999 * 126.07105 * 180.13521 * 13 12 11 38 38 H 1.08998 * 109.47482 * 244.97656 * 15 14 13 39 39 H 1.09001 * 109.47178 * 4.97948 * 15 14 13 40 40 H 0.97003 * 119.99854 * 180.02562 * 19 18 16 41 41 H 1.08001 * 125.90246 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1933 -0.1394 2.4153 6 6 2.6569 -1.1052 3.2420 7 16 3.0561 -0.9069 4.9467 8 8 3.9818 -1.9372 5.2645 9 8 3.3346 0.4736 5.1357 10 7 1.6819 -1.2296 5.8126 11 6 1.1324 -2.5171 5.7993 12 6 -0.0196 -2.9294 6.4883 13 6 -0.2200 -4.2388 6.2151 14 7 0.7699 -4.6465 5.3934 15 6 0.9394 -5.9984 4.8550 16 6 1.0188 -5.9340 3.3515 17 1 0.9493 -4.9814 2.8473 18 6 1.1789 -7.0913 2.6193 19 7 1.2629 -8.2514 3.2332 20 14 1.2765 -7.0115 0.7556 21 1 1.1562 -5.5990 0.3137 22 1 2.5795 -7.5627 0.3041 23 1 0.1709 -7.8096 0.1675 24 7 1.6069 -3.5511 5.1452 25 6 2.7697 -2.2870 2.5025 26 7 2.3869 -2.0399 1.2760 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.9980 0.8884 2.6834 35 1 1.2578 -0.5266 6.3290 36 1 -0.6374 -2.3102 7.1219 37 1 -1.0261 -4.8509 6.5919 38 1 1.8577 -6.4339 5.2489 39 1 0.0899 -6.6154 5.1479 40 1 1.3759 -9.0656 2.7182 41 1 3.1133 -3.2393 2.8788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157810458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:43 Heat of formation + Delta-G solvation = 82.316403 kcal Electronic energy + Delta-G solvation = -27890.140266 eV Core-core repulsion = 23936.012515 eV Total energy + Delta-G solvation = -3954.127751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23328 -40.45594 -36.93203 -35.98179 -35.56330 -35.12681 -33.24232 -30.72546 -30.41817 -30.08100 -29.38341 -27.69272 -26.62791 -23.55714 -23.14251 -21.59993 -20.84032 -20.55617 -20.14038 -18.80467 -17.85026 -17.18834 -16.75821 -16.57620 -15.62797 -15.48253 -15.33655 -14.88522 -14.71605 -14.35145 -14.19682 -14.04179 -13.24874 -13.10162 -13.03646 -12.79713 -12.61101 -12.48965 -12.47179 -12.01863 -11.91419 -11.83436 -11.76955 -11.66492 -11.62503 -11.27948 -11.17533 -10.84138 -10.75952 -10.35661 -10.23408 -9.92091 -9.51984 -9.41055 -9.09792 -8.62012 -8.30331 -7.61264 -6.22874 -4.27423 0.64042 1.64643 2.37179 2.61539 2.71896 3.02313 3.24865 3.33580 3.38287 3.43471 3.72962 4.03454 4.19688 4.35185 4.46620 4.49934 4.66634 4.69671 5.07234 5.07891 5.10958 5.17811 5.20571 5.29155 5.41734 5.48379 5.54774 5.76036 5.78786 5.82394 6.07526 6.20628 6.33070 6.67983 6.73381 6.87786 7.01300 7.15032 7.38678 7.68206 7.71447 7.87300 7.97627 8.50094 8.81421 9.38936 10.86005 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.005523 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.049384 B = 5068.641202 C = 7171.131659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.146 3.854 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.169 3.831 6 C -0.806 4.806 7 S 2.726 3.274 8 O -0.931 6.931 9 O -0.972 6.972 10 N -1.017 6.017 11 C 0.278 3.722 12 C -0.308 4.308 13 C 0.067 3.933 14 N -0.313 5.313 15 C 0.256 3.744 16 C -0.527 4.527 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.284 1.284 24 N -0.298 5.298 25 C 0.165 3.835 26 N -0.293 5.293 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.184 0.816 35 H 0.428 0.572 36 H 0.139 0.861 37 H 0.170 0.830 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 18.539 -1.190 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 C -0.226 4.226 4 N -0.134 5.134 5 C 0.014 3.986 6 C -0.907 4.907 7 S 2.814 3.186 8 O -0.921 6.921 9 O -0.962 6.962 10 N -0.769 5.769 11 C 0.022 3.978 12 C -0.341 4.341 13 C -0.084 4.084 14 N -0.094 5.094 15 C 0.139 3.861 16 C -0.565 4.565 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.210 1.210 24 N -0.129 5.129 25 C -0.025 4.025 26 N -0.111 5.111 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.201 0.799 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.187 0.813 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.854 17.463 -3.205 17.852 hybrid contribution -1.336 0.632 0.046 1.478 sum -3.190 18.095 -3.159 18.644 Atomic orbital electron populations 1.22252 0.93163 1.03886 1.03114 1.21418 0.95252 0.92826 0.86064 1.22248 1.02576 0.93834 1.03912 1.49494 1.47599 1.08092 1.08226 1.22256 0.92763 0.98606 0.84934 1.31356 1.31958 1.01472 1.25900 1.00894 0.72205 0.72790 0.72670 1.93623 1.57946 1.58078 1.82454 1.93556 1.82878 1.33455 1.86328 1.52637 1.47765 1.13767 1.62773 1.18650 0.94703 0.85173 0.99268 1.20825 1.02958 0.96109 1.14235 1.22417 0.94919 0.95511 0.95587 1.49108 1.16950 1.09731 1.33567 1.19819 0.99319 0.71460 0.95509 1.21268 1.51245 0.94227 0.89748 0.91056 1.24894 0.94573 0.94946 0.99357 1.69923 1.49225 0.98030 1.36081 0.86381 0.77724 0.78746 0.84498 1.18991 1.20665 1.21009 1.77424 1.17756 0.92760 1.24977 1.23798 0.92086 0.97785 0.88794 1.77611 1.21107 0.91416 1.20964 0.91155 0.91769 0.90274 0.87510 0.91213 0.89687 0.91303 0.79860 0.73650 0.84358 0.81325 0.93322 0.92510 0.92421 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.52 37.16 0.35 -1.13 16 2 C 0.15 1.46 3.93 -67.93 -0.27 1.19 16 3 C -0.17 -1.13 8.84 37.16 0.33 -0.80 16 4 N -0.36 -5.12 3.53 -54.86 -0.19 -5.32 16 5 C 0.17 2.29 10.33 -17.23 -0.18 2.12 16 6 C -0.81 -13.29 6.11 -40.01 -0.24 -13.54 16 7 S 2.73 44.28 5.64 -107.50 -0.61 43.67 16 8 O -0.93 -18.83 17.08 -57.17 -0.98 -19.81 16 9 O -0.97 -15.49 17.85 -57.17 -1.02 -16.51 16 10 N -1.02 -14.93 5.91 31.39 0.19 -14.74 16 11 C 0.28 5.07 7.72 -154.54 -1.19 3.88 16 12 C -0.31 -5.00 10.83 -39.82 -0.43 -5.43 16 13 C 0.07 1.18 11.44 -17.24 -0.20 0.98 16 14 N -0.31 -6.81 3.67 -62.56 -0.23 -7.04 16 15 C 0.26 6.25 6.26 -5.19 -0.03 6.22 16 16 C -0.53 -14.19 9.24 -34.44 -0.32 -14.50 16 17 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 N -0.30 -6.51 10.92 31.41 0.34 -6.16 16 25 C 0.16 3.18 11.31 -17.36 -0.20 2.99 16 26 N -0.29 -5.52 12.58 30.63 0.39 -5.14 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 7.16 -51.93 -0.37 0.03 16 34 H 0.18 1.72 7.26 -52.49 -0.38 1.34 16 35 H 0.43 4.52 8.95 -34.47 -0.31 4.21 16 36 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.21 4.30 8.01 -52.49 -0.42 3.88 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -35.64 370.96 -8.53 -44.17 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.25 Total: 5.43 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.47 Total: -16.35 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 1.23 Total: -62.72 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.00 Total: -36.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 44.28 SS G_CDS: -0.61 Total: 43.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.64 -8.53 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157810458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.490 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds