Wall clock time and date at job start Tue Mar 31 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 N 1.46504 * 109.46919 * 120.00328 * 2 1 3 5 5 C 1.34939 * 126.03518 * 274.99456 * 4 2 1 6 6 C 1.35315 * 107.74580 * 180.02562 * 5 4 2 7 7 S 1.76202 * 126.04159 * 179.73526 * 6 5 4 8 8 O 1.42105 * 106.40268 * 203.53982 * 7 6 5 9 9 O 1.42097 * 106.40335 * 336.46460 * 7 6 5 10 10 N 1.65603 * 107.21593 * 90.00478 * 7 6 5 11 11 C 1.39994 * 119.99755 * 64.99903 * 10 7 6 12 12 C 1.40420 * 125.97208 * 179.71449 * 11 10 7 13 13 C 1.35253 * 107.86220 * 179.82825 * 12 11 10 14 14 N 1.34955 * 107.86124 * 0.43152 * 13 12 11 15 15 C 1.46502 * 125.97333 * 179.72414 * 14 13 12 16 16 C 1.50698 * 109.46907 * 124.97813 * 15 14 13 17 17 H 1.08000 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46944 * 119.99704 * 20 18 16 23 23 H 1.48501 * 109.46787 * 239.99566 * 20 18 16 24 24 N 1.31225 * 125.97762 * 0.02608 * 11 10 7 25 25 C 1.39870 * 107.92072 * 0.02562 * 6 5 4 26 26 N 1.30839 * 108.20307 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47263 * 299.99521 * 1 2 3 29 29 H 1.09005 * 109.47445 * 59.99725 * 1 2 3 30 30 H 1.09005 * 109.46624 * 240.00191 * 2 1 3 31 31 H 1.08996 * 109.46907 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47063 * 300.00317 * 3 2 1 33 33 H 1.09000 * 109.46678 * 60.00121 * 3 2 1 34 34 H 1.07999 * 126.13245 * 0.04834 * 5 4 2 35 35 H 0.96991 * 119.99973 * 244.99824 * 10 7 6 36 36 H 1.08004 * 126.07012 * 359.96999 * 12 11 10 37 37 H 1.07999 * 126.07105 * 180.13521 * 13 12 11 38 38 H 1.08998 * 109.47482 * 244.97656 * 15 14 13 39 39 H 1.09001 * 109.47178 * 4.97948 * 15 14 13 40 40 H 0.97003 * 119.99854 * 180.02562 * 19 18 16 41 41 H 1.08001 * 125.90246 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1933 -0.1394 2.4153 6 6 2.6569 -1.1052 3.2420 7 16 3.0561 -0.9069 4.9467 8 8 3.9818 -1.9372 5.2645 9 8 3.3346 0.4736 5.1357 10 7 1.6819 -1.2296 5.8126 11 6 1.1324 -2.5171 5.7993 12 6 -0.0196 -2.9294 6.4883 13 6 -0.2200 -4.2388 6.2151 14 7 0.7699 -4.6465 5.3934 15 6 0.9394 -5.9984 4.8550 16 6 1.0188 -5.9340 3.3515 17 1 0.9493 -4.9814 2.8473 18 6 1.1789 -7.0913 2.6193 19 7 1.2629 -8.2514 3.2332 20 14 1.2765 -7.0115 0.7556 21 1 1.1562 -5.5990 0.3137 22 1 2.5795 -7.5627 0.3041 23 1 0.1709 -7.8096 0.1675 24 7 1.6069 -3.5511 5.1452 25 6 2.7697 -2.2870 2.5025 26 7 2.3869 -2.0399 1.2760 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.9980 0.8884 2.6834 35 1 1.2578 -0.5266 6.3290 36 1 -0.6374 -2.3102 7.1219 37 1 -1.0261 -4.8509 6.5919 38 1 1.8577 -6.4339 5.2489 39 1 0.0899 -6.6154 5.1479 40 1 1.3759 -9.0656 2.7182 41 1 3.1133 -3.2393 2.8788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157810458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:42 Heat of formation + Delta-G solvation = 55.799335 kcal Electronic energy + Delta-G solvation = -27891.290133 eV Core-core repulsion = 23936.012515 eV Total energy + Delta-G solvation = -3955.277617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43856 -41.91866 -38.29070 -36.97025 -36.84408 -36.58332 -35.18182 -32.46202 -31.65082 -31.19494 -30.81468 -28.46455 -28.29633 -24.99941 -24.55937 -22.92678 -22.26425 -22.02309 -21.15357 -20.09221 -19.04298 -18.63460 -18.54501 -18.10328 -17.03278 -16.74544 -16.48077 -16.29422 -16.03031 -15.84538 -15.69361 -15.14285 -14.50354 -14.37893 -14.23289 -14.21315 -13.98853 -13.73472 -13.34634 -13.31725 -13.18273 -13.15901 -13.08024 -12.98692 -12.87069 -12.74666 -12.48667 -12.44842 -12.26926 -12.11725 -11.69772 -11.56992 -11.27052 -10.71029 -10.68024 -10.30232 -9.78209 -9.12177 -8.32082 -6.42621 -0.65144 0.52201 1.18145 1.26020 1.30516 1.35353 1.36779 1.48518 1.62476 2.02309 2.27635 2.37048 2.75298 3.00753 3.19515 3.48380 3.64770 3.77140 3.80965 3.91310 3.99319 4.14572 4.33090 4.43486 4.57934 4.64766 4.65918 4.73748 4.82575 4.88984 5.01796 5.02740 5.08175 5.11460 5.15456 5.31445 5.60629 5.74541 5.86480 5.92355 6.08831 6.34935 6.38837 6.70539 7.05024 7.26723 8.75919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.005523 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.049384 B = 5068.641202 C = 7171.131659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.349 5.349 5 C 0.186 3.814 6 C -0.823 4.823 7 S 2.746 3.254 8 O -0.977 6.977 9 O -0.965 6.965 10 N -0.999 5.999 11 C 0.278 3.722 12 C -0.292 4.292 13 C 0.064 3.936 14 N -0.345 5.345 15 C 0.272 3.728 16 C -0.534 4.534 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.278 1.278 23 H -0.269 1.269 24 N -0.347 5.347 25 C 0.144 3.856 26 N -0.333 5.333 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.448 0.552 36 H 0.184 0.816 37 H 0.205 0.795 38 H 0.018 0.982 39 H 0.063 0.937 40 H 0.270 0.730 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 21.896 -1.297 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.219 4.219 4 N -0.127 5.127 5 C 0.031 3.969 6 C -0.924 4.924 7 S 2.836 3.164 8 O -0.967 6.967 9 O -0.955 6.955 10 N -0.756 5.756 11 C 0.020 3.980 12 C -0.325 4.325 13 C -0.085 4.085 14 N -0.126 5.126 15 C 0.153 3.847 16 C -0.572 4.572 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.558 5.558 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.194 1.194 24 N -0.178 5.178 25 C -0.045 4.045 26 N -0.152 5.152 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.288 0.712 36 H 0.202 0.798 37 H 0.222 0.778 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.792 20.853 -3.290 21.449 hybrid contribution -0.780 -0.252 0.072 0.823 sum -4.572 20.601 -3.219 21.346 Atomic orbital electron populations 1.22247 0.92089 1.02306 1.05240 1.21933 0.96112 0.94467 0.84228 1.22278 1.02188 0.91225 1.06178 1.49833 1.46407 1.06582 1.09859 1.22941 0.90324 0.99848 0.83796 1.31282 1.33663 1.01241 1.26178 1.00115 0.71850 0.72044 0.72427 1.93572 1.60091 1.59766 1.83297 1.93553 1.82952 1.32626 1.86339 1.52387 1.47245 1.13124 1.62848 1.19004 0.95067 0.85504 0.98387 1.21319 1.02045 0.95806 1.13320 1.23181 0.94539 0.96632 0.94148 1.48788 1.18953 1.09004 1.35878 1.19309 0.97957 0.73446 0.93963 1.21393 1.50936 0.93429 0.91438 0.92938 1.25534 0.94396 0.94757 1.02874 1.69983 1.50006 0.98461 1.37373 0.85547 0.78108 0.77956 0.80389 1.20312 1.20407 1.19395 1.77377 1.19356 0.93909 1.27155 1.23395 0.93455 0.97820 0.89813 1.77474 1.22099 0.94636 1.20968 0.94512 0.90786 0.86998 0.88147 0.91840 0.86812 0.89646 0.74955 0.71158 0.79835 0.77844 0.96366 0.91962 0.92042 0.81080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.52 71.98 0.69 -1.82 16 2 C 0.13 2.38 3.93 44.99 0.18 2.56 16 3 C -0.16 -1.55 8.84 71.98 0.64 -0.91 16 4 N -0.35 -9.73 3.53 -327.49 -1.15 -10.88 16 5 C 0.19 4.68 10.33 83.54 0.86 5.55 16 6 C -0.82 -27.13 6.11 21.99 0.13 -27.00 16 7 S 2.75 87.82 5.64 -56.49 -0.32 87.50 16 8 O -0.98 -40.98 17.08 -128.00 -2.19 -43.17 16 9 O -0.96 -28.61 17.85 -128.00 -2.28 -30.89 16 10 N -1.00 -27.66 5.91 -54.61 -0.32 -27.98 16 11 C 0.28 9.87 7.72 133.38 1.03 10.90 16 12 C -0.29 -8.69 10.83 22.11 0.24 -8.45 16 13 C 0.06 2.15 11.44 83.52 0.96 3.10 16 14 N -0.34 -15.35 3.67 -351.84 -1.29 -16.64 16 15 C 0.27 13.89 6.26 85.63 0.54 14.43 16 16 C -0.53 -30.09 9.24 25.60 0.24 -29.85 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.02 1.39 5.46 84.65 0.46 1.85 16 19 N -0.92 -52.73 13.29 21.45 0.28 -52.44 16 20 Si 0.95 45.68 29.54 68.60 2.03 47.70 16 21 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 N -0.35 -15.60 10.92 -54.55 -0.60 -16.20 16 25 C 0.14 5.91 11.31 85.24 0.96 6.87 16 26 N -0.33 -13.06 12.58 -57.02 -0.72 -13.78 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.57 7.16 -2.39 -0.02 0.55 16 34 H 0.23 3.28 7.26 -2.91 -0.02 3.26 16 35 H 0.45 8.05 8.95 -96.75 -0.87 7.19 16 36 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.20 5.10 8.06 -2.91 -0.02 5.08 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.06 3.05 8.07 -2.39 -0.02 3.03 16 40 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.17 8.05 8.01 -2.91 -0.02 8.02 16 Total: -1.00 -82.40 370.96 0.56 -81.84 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.20 Total: 17.70 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 6.92 Total: -22.78 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -3.80 Total: -137.92 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -4.47 Total: -74.06 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 87.82 SS G_CDS: -0.32 Total: 87.50 kcal Total: -82.40 0.56 -81.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157810458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.644 kcal (2) G-P(sol) polarization free energy of solvation -82.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds