Wall clock time and date at job start Tue Mar 31 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47185 * 101.12536 * 3 2 1 5 5 N 1.46494 * 109.47135 * 185.41510 * 4 3 2 6 6 C 1.46501 * 120.00154 * 277.86647 * 5 4 3 7 7 C 1.50707 * 109.46893 * 270.00073 * 6 5 4 8 8 H 1.07998 * 119.99863 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99525 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99869 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00404 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47654 * 89.99302 * 11 9 7 13 13 H 1.48506 * 109.47137 * 209.99792 * 11 9 7 14 14 H 1.48498 * 109.47103 * 329.99338 * 11 9 7 15 15 C 1.34780 * 119.99945 * 97.86739 * 5 4 3 16 16 O 1.21507 * 119.99883 * 185.79283 * 15 5 4 17 17 C 1.48165 * 120.00094 * 5.79703 * 15 5 4 18 18 C 1.39958 * 120.88790 * 315.42439 * 17 15 5 19 19 C 1.37986 * 119.13489 * 180.02562 * 18 17 15 20 20 N 1.31908 * 120.97198 * 359.73743 * 19 18 17 21 21 C 1.32177 * 121.97203 * 0.53759 * 20 19 18 22 22 O 1.35688 * 119.62287 * 179.75108 * 21 20 19 23 23 C 1.42907 * 116.99709 * 359.71455 * 22 21 20 24 24 C 1.52999 * 109.46839 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.47373 * 300.00614 * 24 23 22 26 26 F 1.39908 * 109.47043 * 60.00193 * 24 23 22 27 27 C 1.38896 * 120.75233 * 359.46404 * 21 20 19 28 28 H 1.08999 * 109.47128 * 341.12380 * 3 2 1 29 29 H 1.09002 * 109.47050 * 221.12857 * 3 2 1 30 30 H 1.09000 * 109.46696 * 65.41292 * 4 3 2 31 31 H 1.09001 * 109.47334 * 305.41730 * 4 3 2 32 32 H 1.09003 * 109.46923 * 29.99882 * 6 5 4 33 33 H 1.08998 * 109.47340 * 150.00392 * 6 5 4 34 34 H 0.97000 * 120.00437 * 180.02562 * 10 9 7 35 35 H 1.08009 * 120.43509 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.51048 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.46841 * 60.01213 * 23 22 21 38 38 H 1.08997 * 109.47089 * 300.00260 * 23 22 21 39 39 H 1.08993 * 109.47501 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.52410 * 180.28702 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2792 -1.4154 5 7 4.5771 0.1524 -1.4425 6 6 5.4178 1.2702 -1.0067 7 6 5.7251 2.1571 -2.1857 8 1 5.3330 1.9128 -3.1619 9 6 6.5059 3.2810 -2.0178 10 7 6.7746 4.0548 -3.0468 11 14 7.1835 3.7039 -0.3292 12 1 8.5097 3.0596 -0.1523 13 1 7.3287 5.1769 -0.2088 14 1 6.2506 3.2115 0.7160 15 6 5.1462 -0.9927 -1.8685 16 8 6.3502 -1.1377 -1.7926 17 6 4.3036 -2.0747 -2.4295 18 6 3.1086 -2.4514 -1.8059 19 6 2.3523 -3.4641 -2.3593 20 7 2.7376 -4.0731 -3.4641 21 6 3.8607 -3.7542 -4.0838 22 8 4.2137 -4.4154 -5.2148 23 6 3.3293 -5.4421 -5.6689 24 6 3.8901 -6.0698 -6.9466 25 9 4.0105 -5.0871 -7.9350 26 9 5.1482 -6.6215 -6.6818 27 6 4.6807 -2.7460 -3.5936 28 1 2.9718 -0.9716 0.3325 29 1 2.9710 0.7749 0.6760 30 1 2.8354 1.2896 -1.7110 31 1 2.6779 -0.4383 -2.1079 32 1 4.8906 1.8463 -0.2462 33 1 6.3482 0.8842 -0.5901 34 1 7.3242 4.8453 -2.9288 35 1 2.7831 -1.9564 -0.9028 36 1 1.4289 -3.7594 -1.8833 37 1 2.3491 -5.0123 -5.8749 38 1 3.2359 -6.2079 -4.8989 39 1 3.2159 -6.8531 -7.2927 40 1 5.5952 -2.4853 -4.1055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158740785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:21 Heat of formation + Delta-G solvation = -90.146584 kcal Electronic energy + Delta-G solvation = -28633.380440 eV Core-core repulsion = 24085.640995 eV Total energy + Delta-G solvation = -4547.739445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.22866 -47.25931 -41.07401 -39.55289 -37.91799 -37.11453 -35.57125 -33.21570 -32.45478 -31.66858 -31.17840 -29.71460 -28.27583 -25.15252 -24.18468 -23.66400 -23.32144 -22.07914 -19.85229 -18.39520 -17.94207 -17.81877 -17.68561 -17.23713 -16.93755 -16.82804 -16.47002 -16.10607 -15.62431 -15.52223 -14.82253 -14.67890 -14.28567 -14.18547 -14.05636 -13.87753 -13.69795 -13.61539 -13.50104 -13.10791 -12.73009 -12.68890 -12.63971 -12.40412 -12.02521 -11.92813 -11.71532 -11.57873 -11.40447 -11.12688 -11.07228 -10.64916 -10.35574 -10.16561 -9.96696 -9.66410 -9.36803 -8.73102 -8.68956 -8.09695 -6.18185 -4.19475 0.75280 0.94677 2.38863 2.56677 2.65804 3.01014 3.21158 3.25619 3.28853 3.34305 3.42153 3.62515 3.76983 3.93425 3.99726 4.11334 4.30091 4.46166 4.50921 4.71526 4.81820 4.87235 4.91280 4.94614 5.01152 5.01785 5.14789 5.27045 5.54164 5.57227 5.63648 5.90778 5.96279 6.06215 6.46571 6.74912 6.87818 6.99723 7.41776 7.45805 7.55081 7.82801 8.31095 8.54389 8.84807 9.39929 10.94753 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.003117 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.178097 B = 8980.818471 C =10772.635523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.213 3.787 3 C -0.056 4.056 4 C 0.104 3.896 5 N -0.579 5.579 6 C 0.214 3.786 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.892 5.892 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.264 1.264 15 C 0.555 3.445 16 O -0.514 6.514 17 C -0.033 4.033 18 C -0.197 4.197 19 C 0.136 3.864 20 N -0.535 5.535 21 C 0.320 3.680 22 O -0.292 6.292 23 C 0.019 3.981 24 C 0.270 3.730 25 F -0.197 7.197 26 F -0.198 7.198 27 C -0.133 4.133 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.694 -18.803 0.240 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.105 4.105 3 C -0.097 4.097 4 C -0.022 4.022 5 N -0.310 5.310 6 C 0.094 3.906 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.702 3.298 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.340 3.660 16 O -0.390 6.390 17 C -0.044 4.044 18 C -0.217 4.217 19 C -0.018 4.018 20 N -0.259 5.259 21 C 0.141 3.859 22 O -0.199 6.199 23 C -0.058 4.058 24 C 0.217 3.783 25 F -0.179 7.179 26 F -0.180 7.180 27 C -0.154 4.154 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.857 -19.284 -0.315 22.640 hybrid contribution 1.199 0.993 1.054 1.880 sum -10.658 -18.291 0.739 21.183 Atomic orbital electron populations 1.81237 1.12806 1.08827 1.08287 1.28948 0.94936 0.93243 0.93417 1.19990 0.81810 1.06047 1.01890 1.21643 0.81641 1.05229 0.93700 1.47775 1.05669 1.14316 1.63220 1.19829 0.90818 0.83494 0.96449 1.21280 1.33021 1.07727 0.95610 0.90522 1.24848 0.95342 0.95819 0.96789 1.69888 1.37798 1.15183 1.30123 0.86872 0.80417 0.77894 0.84622 1.19797 1.21034 1.18908 1.18003 0.87277 0.81774 0.78941 1.90808 1.13913 1.79607 1.54626 1.20352 0.94227 0.95607 0.94232 1.22589 0.95253 1.00513 1.03347 1.22293 0.98658 0.91022 0.89875 1.67114 1.15908 1.31082 1.11835 1.19523 0.89805 0.90157 0.86373 1.86323 1.47243 1.48284 1.38061 1.23818 0.94680 0.91667 0.95600 1.22121 0.83203 0.87242 0.85767 1.93039 1.96459 1.64727 1.63646 1.93035 1.44795 1.85840 1.94299 1.21094 1.01751 0.95586 0.96969 0.87016 0.86051 0.88197 0.89362 0.94501 0.93802 0.92374 0.83305 0.81861 0.88384 0.88448 0.85140 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.66 18.54 42.16 0.78 -4.87 16 2 C 0.21 2.21 15.34 -20.76 -0.32 1.90 16 3 C -0.06 -0.50 5.09 -29.52 -0.15 -0.66 16 4 C 0.10 1.29 4.84 -4.05 -0.02 1.27 16 5 N -0.58 -9.95 2.46 -176.06 -0.43 -10.38 16 6 C 0.21 4.50 4.29 -5.19 -0.02 4.48 16 7 C -0.54 -14.15 9.94 -34.44 -0.34 -14.49 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 11 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 15 C 0.55 10.02 7.34 -12.18 -0.09 9.93 16 16 O -0.51 -11.46 16.55 5.36 0.09 -11.37 16 17 C -0.03 -0.48 5.13 -104.68 -0.54 -1.02 16 18 C -0.20 -2.12 7.51 -39.03 -0.29 -2.41 16 19 C 0.14 1.35 11.17 -17.61 -0.20 1.15 16 20 N -0.53 -6.22 9.18 -13.38 -0.12 -6.34 16 21 C 0.32 4.25 7.49 -17.16 -0.13 4.12 16 22 O -0.29 -3.73 10.00 -18.77 -0.19 -3.92 16 23 C 0.02 0.16 5.53 37.16 0.21 0.37 16 24 C 0.27 2.04 5.63 37.16 0.21 2.25 16 25 F -0.20 -2.11 17.28 2.25 0.04 -2.07 16 26 F -0.20 -2.07 17.28 2.25 0.04 -2.03 16 27 C -0.13 -1.96 9.74 -38.84 -0.38 -2.34 16 28 H 0.11 0.78 6.26 -51.93 -0.33 0.46 16 29 H 0.12 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 31 H 0.09 1.01 5.01 -51.93 -0.26 0.75 16 32 H 0.04 0.70 7.07 -51.93 -0.37 0.34 16 33 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.15 1.27 3.66 -52.48 -0.19 1.08 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.10 0.69 8.11 -51.93 -0.42 0.26 16 39 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.15 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -35.19 359.79 -4.47 -39.66 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.04 Total: -0.45 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.16 Total: 6.52 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 1.00 Total: -47.07 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.10 Total: -15.29 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.08 Total: -4.10 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.19 -4.47 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158740785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.488 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds