Wall clock time and date at job start Tue Mar 31 2020 22:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47185 * 101.12536 * 3 2 1 5 5 N 1.46494 * 109.47135 * 185.41510 * 4 3 2 6 6 C 1.46501 * 120.00154 * 277.86647 * 5 4 3 7 7 C 1.50707 * 109.46893 * 270.00073 * 6 5 4 8 8 H 1.07998 * 119.99863 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99525 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99869 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00404 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47654 * 89.99302 * 11 9 7 13 13 H 1.48506 * 109.47137 * 209.99792 * 11 9 7 14 14 H 1.48498 * 109.47103 * 329.99338 * 11 9 7 15 15 C 1.34780 * 119.99945 * 97.86739 * 5 4 3 16 16 O 1.21507 * 119.99883 * 185.79283 * 15 5 4 17 17 C 1.48165 * 120.00094 * 5.79703 * 15 5 4 18 18 C 1.39958 * 120.88790 * 315.42439 * 17 15 5 19 19 C 1.37986 * 119.13489 * 180.02562 * 18 17 15 20 20 N 1.31908 * 120.97198 * 359.73743 * 19 18 17 21 21 C 1.32177 * 121.97203 * 0.53759 * 20 19 18 22 22 O 1.35688 * 119.62287 * 179.75108 * 21 20 19 23 23 C 1.42907 * 116.99709 * 359.71455 * 22 21 20 24 24 C 1.52999 * 109.46839 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.47373 * 300.00614 * 24 23 22 26 26 F 1.39908 * 109.47043 * 60.00193 * 24 23 22 27 27 C 1.38896 * 120.75233 * 359.46404 * 21 20 19 28 28 H 1.08999 * 109.47128 * 341.12380 * 3 2 1 29 29 H 1.09002 * 109.47050 * 221.12857 * 3 2 1 30 30 H 1.09000 * 109.46696 * 65.41292 * 4 3 2 31 31 H 1.09001 * 109.47334 * 305.41730 * 4 3 2 32 32 H 1.09003 * 109.46923 * 29.99882 * 6 5 4 33 33 H 1.08998 * 109.47340 * 150.00392 * 6 5 4 34 34 H 0.97000 * 120.00437 * 180.02562 * 10 9 7 35 35 H 1.08009 * 120.43509 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.51048 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.46841 * 60.01213 * 23 22 21 38 38 H 1.08997 * 109.47089 * 300.00260 * 23 22 21 39 39 H 1.08993 * 109.47501 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.52410 * 180.28702 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2792 -1.4154 5 7 4.5771 0.1524 -1.4425 6 6 5.4178 1.2702 -1.0067 7 6 5.7251 2.1571 -2.1857 8 1 5.3330 1.9128 -3.1619 9 6 6.5059 3.2810 -2.0178 10 7 6.7746 4.0548 -3.0468 11 14 7.1835 3.7039 -0.3292 12 1 8.5097 3.0596 -0.1523 13 1 7.3287 5.1769 -0.2088 14 1 6.2506 3.2115 0.7160 15 6 5.1462 -0.9927 -1.8685 16 8 6.3502 -1.1377 -1.7926 17 6 4.3036 -2.0747 -2.4295 18 6 3.1086 -2.4514 -1.8059 19 6 2.3523 -3.4641 -2.3593 20 7 2.7376 -4.0731 -3.4641 21 6 3.8607 -3.7542 -4.0838 22 8 4.2137 -4.4154 -5.2148 23 6 3.3293 -5.4421 -5.6689 24 6 3.8901 -6.0698 -6.9466 25 9 4.0105 -5.0871 -7.9350 26 9 5.1482 -6.6215 -6.6818 27 6 4.6807 -2.7460 -3.5936 28 1 2.9718 -0.9716 0.3325 29 1 2.9710 0.7749 0.6760 30 1 2.8354 1.2896 -1.7110 31 1 2.6779 -0.4383 -2.1079 32 1 4.8906 1.8463 -0.2462 33 1 6.3482 0.8842 -0.5901 34 1 7.3242 4.8453 -2.9288 35 1 2.7831 -1.9564 -0.9028 36 1 1.4289 -3.7594 -1.8833 37 1 2.3491 -5.0123 -5.8749 38 1 3.2359 -6.2079 -4.8989 39 1 3.2159 -6.8531 -7.2927 40 1 5.5952 -2.4853 -4.1055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158740785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:20 Heat of formation + Delta-G solvation = -115.841187 kcal Electronic energy + Delta-G solvation = -28634.494642 eV Core-core repulsion = 24085.640995 eV Total energy + Delta-G solvation = -4548.853647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.93250 -47.99086 -42.11362 -40.76756 -38.91401 -38.14036 -36.85182 -34.93591 -33.74648 -32.71103 -32.17582 -30.52152 -29.96416 -26.33941 -25.34399 -24.60334 -24.39468 -23.33668 -20.99469 -19.48410 -19.17734 -18.70067 -18.52812 -18.48822 -18.02794 -17.84765 -17.39962 -17.00438 -16.93175 -16.63802 -16.18831 -15.67478 -15.64818 -15.32395 -14.92810 -14.89403 -14.65367 -14.53876 -14.43263 -14.34914 -14.20313 -13.77744 -13.64192 -13.38580 -13.33732 -13.12490 -12.98949 -12.65056 -12.41083 -12.34393 -12.05211 -12.02853 -11.94055 -11.70158 -11.35929 -11.02195 -10.77562 -10.64268 -9.67010 -9.59715 -8.28152 -6.34716 -0.31255 0.00757 1.39841 1.44103 1.45706 1.52708 1.65443 1.82582 1.85732 2.14705 2.37445 2.63069 2.80082 2.97506 3.08844 3.15496 3.28550 3.42304 3.50136 3.78411 3.84923 3.88927 3.97477 4.01037 4.13800 4.31945 4.40710 4.41076 4.56996 4.63436 4.75762 4.84112 4.92053 5.00442 5.09235 5.19538 5.47418 5.51761 5.99062 6.24889 6.43464 6.62249 6.62429 6.69063 7.08787 7.30990 8.88687 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.003117 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.178097 B = 8980.818471 C =10772.635523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.242 3.758 3 C -0.045 4.045 4 C 0.098 3.902 5 N -0.579 5.579 6 C 0.220 3.780 7 C -0.541 4.541 8 H 0.027 0.973 9 C 0.010 3.990 10 N -0.949 5.949 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.219 1.219 15 C 0.551 3.449 16 O -0.570 6.570 17 C -0.044 4.044 18 C -0.182 4.182 19 C 0.150 3.850 20 N -0.528 5.528 21 C 0.319 3.681 22 O -0.317 6.317 23 C 0.011 3.989 24 C 0.264 3.736 25 F -0.219 7.219 26 F -0.218 7.218 27 C -0.163 4.163 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.177 0.823 36 H 0.211 0.789 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.190 0.810 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.439 -20.558 3.064 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.026 4.026 5 N -0.308 5.308 6 C 0.099 3.901 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.768 3.232 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.141 1.141 15 C 0.338 3.662 16 O -0.449 6.449 17 C -0.055 4.055 18 C -0.202 4.202 19 C -0.005 4.005 20 N -0.252 5.252 21 C 0.141 3.859 22 O -0.225 6.225 23 C -0.064 4.064 24 C 0.211 3.789 25 F -0.201 7.201 26 F -0.200 7.200 27 C -0.185 4.185 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.227 0.773 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.206 0.794 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.668 -21.067 2.504 25.792 hybrid contribution 1.987 1.473 0.033 2.473 sum -12.681 -19.594 2.537 23.477 Atomic orbital electron populations 1.81293 1.14116 1.10452 1.09527 1.28923 0.94697 0.91828 0.92130 1.19944 0.80697 1.08438 0.99441 1.21855 0.78762 1.05346 0.96687 1.47713 1.07392 1.12997 1.62655 1.19573 0.91773 0.83937 0.94827 1.21599 1.32253 1.08516 0.95576 0.95464 1.25887 0.95733 0.95733 1.01479 1.70070 1.39459 1.16185 1.33175 0.85757 0.79952 0.77450 0.80070 1.20526 1.21018 1.14089 1.18567 0.87017 0.82618 0.77957 1.90766 1.16454 1.80954 1.56713 1.20047 0.95503 0.95130 0.94782 1.22834 0.93294 1.00417 1.03615 1.23089 0.99334 0.89405 0.88675 1.67261 1.14743 1.30941 1.12258 1.19422 0.89955 0.89841 0.86719 1.86294 1.48910 1.49353 1.37941 1.24200 0.94685 0.91144 0.96395 1.22839 0.83078 0.87959 0.85028 1.92993 1.96555 1.66000 1.64531 1.92992 1.46518 1.86042 1.94419 1.20980 1.01888 0.97547 0.98091 0.84060 0.84162 0.89118 0.88170 0.90794 0.95014 0.92445 0.80601 0.77286 0.86954 0.86712 0.79353 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.90 18.54 20.01 0.37 -10.53 16 2 C 0.24 4.07 15.34 89.44 1.37 5.44 16 3 C -0.04 -0.60 5.09 28.79 0.15 -0.46 16 4 C 0.10 2.21 4.84 86.38 0.42 2.63 16 5 N -0.58 -19.43 2.46 -829.21 -2.04 -21.47 16 6 C 0.22 9.08 4.29 85.63 0.37 9.45 16 7 C -0.54 -29.35 9.94 25.60 0.25 -29.09 16 8 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 11 Si 0.95 40.84 27.47 68.60 1.88 42.73 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.22 -7.78 6.54 99.48 0.65 -7.13 16 15 C 0.55 20.24 7.34 86.88 0.64 20.87 16 16 O -0.57 -26.62 16.55 -3.74 -0.06 -26.68 16 17 C -0.04 -1.25 5.13 -19.90 -0.10 -1.35 16 18 C -0.18 -3.33 7.51 22.63 0.17 -3.16 16 19 C 0.15 2.34 11.17 84.62 0.94 3.29 16 20 N -0.53 -10.84 9.18 -309.13 -2.84 -13.68 16 21 C 0.32 8.38 7.49 84.80 0.63 9.02 16 22 O -0.32 -8.20 10.00 -90.07 -0.90 -9.10 16 23 C 0.01 0.17 5.53 71.98 0.40 0.57 16 24 C 0.26 3.60 5.63 71.98 0.41 4.00 16 25 F -0.22 -4.63 17.28 44.97 0.78 -3.85 16 26 F -0.22 -4.46 17.28 44.97 0.78 -3.69 16 27 C -0.16 -5.07 9.74 22.75 0.22 -4.85 16 28 H 0.14 1.18 6.26 -2.39 -0.01 1.17 16 29 H 0.14 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.09 2.27 8.13 -2.39 -0.02 2.25 16 31 H 0.10 2.04 5.01 -2.39 -0.01 2.03 16 32 H 0.07 2.54 7.07 -2.39 -0.02 2.52 16 33 H 0.03 1.41 6.78 -2.39 -0.02 1.40 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.18 2.15 3.66 -2.91 -0.01 2.14 16 36 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.11 1.34 8.11 -2.39 -0.02 1.32 16 39 H 0.19 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -84.74 359.79 5.65 -79.08 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.06 Total: 7.80 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.33 Total: 17.35 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.21 Total: -103.64 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.96 Total: -35.78 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 1.55 Total: -7.54 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.73 kcal Total: -84.74 5.65 -79.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158740785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.759 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds