Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48502 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47645 * 300.00449 * 3 2 1 6 6 H 1.48500 * 109.46941 * 60.00381 * 3 2 1 7 7 C 1.37869 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99970 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97694 * 125.00271 * 10 9 7 12 12 C 1.35237 * 107.86759 * 179.97438 * 11 10 9 13 13 C 1.40424 * 107.86511 * 0.26440 * 12 11 10 14 14 N 1.40085 * 125.97414 * 179.71954 * 13 12 11 15 15 C 1.34769 * 120.00312 * 359.97438 * 14 13 12 16 16 O 1.21594 * 119.99662 * 359.97438 * 15 14 13 17 17 C 1.47668 * 120.00477 * 180.02562 * 15 14 13 18 18 C 1.39696 * 120.07688 * 359.72432 * 17 15 14 19 19 C 1.37753 * 119.91827 * 179.76636 * 18 17 15 20 20 C 1.39021 * 120.07763 * 0.51065 * 19 18 17 21 21 N 1.39968 * 119.91748 * 179.72045 * 20 19 18 22 22 C 1.35134 * 127.39622 * 359.72616 * 21 20 19 23 23 N 1.30716 * 107.26607 * 179.87425 * 22 21 20 24 24 N 1.28414 * 110.65408 * 0.40909 * 23 22 21 25 25 N 1.28941 * 110.22079 * 359.74340 * 24 23 22 26 26 C 1.39021 * 120.16177 * 359.73793 * 20 19 18 27 27 C 1.37743 * 120.08544 * 0.02562 * 26 20 19 28 28 N 1.31231 * 108.04674 * 359.55111 * 13 12 11 29 29 H 0.96998 * 120.00573 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47375 * 60.00071 * 9 7 2 31 31 H 1.09000 * 109.47059 * 300.00141 * 9 7 2 32 32 H 1.08003 * 126.06571 * 359.95124 * 11 10 9 33 33 H 1.08002 * 126.06518 * 179.97438 * 12 11 10 34 34 H 0.97004 * 119.99484 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.04386 * 0.02562 * 18 17 15 36 36 H 1.07996 * 119.96264 * 180.27216 * 19 18 17 37 37 H 1.08008 * 126.36391 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.95302 * 180.02562 * 26 20 19 39 39 H 1.08002 * 120.04336 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2605 -5.4429 0.5495 13 6 3.8724 -4.9118 -0.5974 14 7 4.9720 -5.4586 -1.2714 15 6 5.5379 -6.5974 -0.8251 16 8 5.0942 -7.1500 0.1630 17 6 6.6974 -7.1735 -1.5352 18 6 7.2055 -6.5425 -2.6732 19 6 8.2903 -7.0801 -3.3304 20 6 8.8726 -8.2549 -2.8684 21 7 9.9711 -8.8014 -3.5421 22 6 10.5779 -8.3191 -4.6490 23 7 11.5584 -9.1332 -4.9399 24 7 11.6079 -10.1016 -4.0980 25 7 10.6761 -9.9735 -3.2160 26 6 8.3664 -8.8884 -1.7393 27 6 7.2849 -8.3541 -1.0742 28 7 3.2317 -3.8157 -0.9295 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 1.5784 -4.7519 1.7362 33 1 3.5541 -6.3440 1.0674 34 1 5.3261 -5.0175 -2.0594 35 1 6.7511 -5.6320 -3.0350 36 1 8.6864 -6.5905 -4.2077 37 1 10.3052 -7.4255 -5.1910 38 1 8.8216 -9.8007 -1.3831 39 1 6.8920 -8.8470 -0.1973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172152440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = 209.344574 kcal Electronic energy + Delta-G solvation = -26461.976869 eV Core-core repulsion = 22410.206273 eV Total energy + Delta-G solvation = -4051.770596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.77306 -41.07579 -40.26642 -38.92740 -35.63812 -35.05996 -33.48178 -32.96142 -31.86155 -31.38341 -30.53782 -29.43739 -26.98110 -26.03253 -24.59094 -23.83166 -22.91683 -22.32050 -21.67687 -20.50555 -19.78019 -19.35703 -17.90632 -17.18500 -16.87874 -16.72616 -16.63981 -16.06142 -15.43761 -15.31503 -15.20802 -14.71131 -14.38127 -14.30887 -14.08708 -13.80337 -13.77509 -13.56871 -12.93117 -12.72962 -12.45859 -12.36873 -12.07812 -11.85670 -11.84867 -11.60252 -11.13645 -11.08363 -10.94908 -10.58541 -10.33649 -10.23215 -9.85841 -9.82967 -9.58161 -9.34654 -8.70645 -8.26849 -7.60504 -6.31282 -4.36677 -0.49226 0.54235 0.77227 1.13097 1.69616 2.20943 2.51559 2.74341 3.13321 3.17033 3.24946 3.30527 3.40783 3.57664 3.65200 3.68195 4.01010 4.12305 4.23174 4.24359 4.29681 4.48219 4.72103 4.76393 4.87649 5.04063 5.16740 5.24330 5.41634 5.44001 5.63155 5.66375 5.70457 6.04204 6.09466 6.35944 6.45378 6.76424 6.96689 7.21782 7.40737 7.63003 7.79733 7.81172 7.93293 7.98054 8.49876 8.72281 9.29376 10.77512 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.001871 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.272537 B =14958.353427 C =16041.783947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.316 5.316 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.253 3.747 14 N -0.622 5.622 15 C 0.562 3.438 16 O -0.507 6.507 17 C -0.114 4.114 18 C -0.061 4.061 19 C -0.126 4.126 20 C 0.149 3.851 21 N -0.330 5.330 22 C 0.231 3.769 23 N -0.329 5.329 24 N -0.032 5.032 25 N -0.072 5.072 26 C -0.108 4.108 27 C -0.034 4.034 28 N -0.301 5.301 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.242 0.758 38 H 0.150 0.850 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.637 -15.132 -6.816 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.098 5.098 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.001 3.999 14 N -0.269 5.269 15 C 0.348 3.652 16 O -0.381 6.381 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.147 4.147 20 C 0.057 3.943 21 N -0.120 5.120 22 C -0.066 4.066 23 N -0.177 5.177 24 N -0.028 5.028 25 N -0.057 5.057 26 C -0.128 4.128 27 C -0.053 4.053 28 N -0.132 5.132 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.258 0.742 38 H 0.168 0.832 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.877 -15.517 -6.783 23.213 hybrid contribution -0.111 1.427 0.086 1.434 sum 15.766 -14.090 -6.697 22.179 Atomic orbital electron populations 1.69923 1.06041 1.27605 1.49659 1.24948 0.94994 0.99587 0.94557 0.86270 0.80011 0.82434 0.77773 1.19580 1.20663 1.20738 1.21277 0.94011 0.89323 1.52168 0.91238 1.19791 0.85593 0.81256 0.99404 1.49117 1.23081 1.19655 1.17897 1.22590 1.00287 0.90058 0.96767 1.21521 1.02001 1.06405 1.01795 1.19021 0.91337 0.94650 0.94935 1.42260 1.29470 1.24738 1.30471 1.17961 0.82823 0.80084 0.84341 1.90758 1.62247 1.59995 1.25102 1.20068 0.97388 0.97330 0.97018 1.21259 0.94276 0.99240 0.93261 1.20779 0.97576 0.94389 1.01909 1.17776 0.87090 0.94842 0.94638 1.49089 1.23506 1.18849 1.20546 1.27551 0.90375 1.00968 0.87736 1.74518 1.18783 1.02038 1.22362 1.78117 1.11911 1.14705 0.98018 1.82709 1.04083 0.99137 1.19797 1.20967 0.96935 1.01199 0.93708 1.21258 0.92412 0.92921 0.98740 1.77331 1.03514 1.16219 1.16170 0.92317 0.93603 0.92419 0.81328 0.82198 0.75363 0.83580 0.83848 0.74199 0.83246 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.19 9.24 -34.44 -0.32 -14.51 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.26 6.25 6.26 -5.19 -0.03 6.22 16 10 N -0.32 -6.93 3.67 -62.56 -0.23 -7.16 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.29 -5.24 9.60 -39.83 -0.38 -5.62 16 13 C 0.25 4.65 8.11 -154.45 -1.25 3.39 16 14 N -0.62 -8.30 5.40 -12.04 -0.06 -8.36 16 15 C 0.56 6.90 7.73 -12.41 -0.10 6.80 16 16 O -0.51 -7.75 13.46 5.28 0.07 -7.68 16 17 C -0.11 -0.94 5.87 -104.96 -0.62 -1.55 16 18 C -0.06 -0.33 9.53 -39.21 -0.37 -0.70 16 19 C -0.13 -0.52 9.47 -39.47 -0.37 -0.89 16 20 C 0.15 0.92 6.71 -83.56 -0.56 0.36 16 21 N -0.33 -2.36 3.85 -11.70 -0.05 -2.41 16 22 C 0.23 1.27 12.15 -90.11 -1.09 0.17 16 23 N -0.33 -3.01 12.15 29.65 0.36 -2.65 16 24 N -0.03 -0.35 13.38 60.35 0.81 0.45 16 25 N -0.07 -0.72 13.31 60.35 0.80 0.09 16 26 C -0.11 -0.71 9.68 -39.47 -0.38 -1.09 16 27 C -0.03 -0.25 9.59 -39.22 -0.38 -0.63 16 28 N -0.30 -6.46 12.42 31.43 0.39 -6.07 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.17 2.55 8.06 -52.48 -0.42 2.12 16 33 H 0.16 2.81 5.91 -52.49 -0.31 2.50 16 34 H 0.41 4.12 6.85 -40.82 -0.28 3.84 16 35 H 0.15 0.51 6.39 -52.49 -0.34 0.17 16 36 H 0.14 0.10 6.86 -52.49 -0.36 -0.26 16 37 H 0.24 -0.03 7.17 -52.48 -0.38 -0.40 16 38 H 0.15 0.91 7.75 -52.49 -0.41 0.50 16 39 H 0.16 1.11 7.64 -52.49 -0.40 0.71 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -34.66 351.58 -6.32 -40.99 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.28 Total: 1.40 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -6.15 Total: -5.71 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 2.76 Total: -49.95 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.07 Total: -7.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.66 -6.32 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172152440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.331 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds