Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48502 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47645 * 300.00449 * 3 2 1 6 6 H 1.48500 * 109.46941 * 60.00381 * 3 2 1 7 7 C 1.37869 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99970 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97694 * 125.00271 * 10 9 7 12 12 C 1.35237 * 107.86759 * 179.97438 * 11 10 9 13 13 C 1.40424 * 107.86511 * 0.26440 * 12 11 10 14 14 N 1.40085 * 125.97414 * 179.71954 * 13 12 11 15 15 C 1.34769 * 120.00312 * 359.97438 * 14 13 12 16 16 O 1.21594 * 119.99662 * 359.97438 * 15 14 13 17 17 C 1.47668 * 120.00477 * 180.02562 * 15 14 13 18 18 C 1.39696 * 120.07688 * 359.72432 * 17 15 14 19 19 C 1.37753 * 119.91827 * 179.76636 * 18 17 15 20 20 C 1.39021 * 120.07763 * 0.51065 * 19 18 17 21 21 N 1.39968 * 119.91748 * 179.72045 * 20 19 18 22 22 C 1.35134 * 127.39622 * 359.72616 * 21 20 19 23 23 N 1.30716 * 107.26607 * 179.87425 * 22 21 20 24 24 N 1.28414 * 110.65408 * 0.40909 * 23 22 21 25 25 N 1.28941 * 110.22079 * 359.74340 * 24 23 22 26 26 C 1.39021 * 120.16177 * 359.73793 * 20 19 18 27 27 C 1.37743 * 120.08544 * 0.02562 * 26 20 19 28 28 N 1.31231 * 108.04674 * 359.55111 * 13 12 11 29 29 H 0.96998 * 120.00573 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47375 * 60.00071 * 9 7 2 31 31 H 1.09000 * 109.47059 * 300.00141 * 9 7 2 32 32 H 1.08003 * 126.06571 * 359.95124 * 11 10 9 33 33 H 1.08002 * 126.06518 * 179.97438 * 12 11 10 34 34 H 0.97004 * 119.99484 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.04386 * 0.02562 * 18 17 15 36 36 H 1.07996 * 119.96264 * 180.27216 * 19 18 17 37 37 H 1.08008 * 126.36391 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.95302 * 180.02562 * 26 20 19 39 39 H 1.08002 * 120.04336 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2605 -5.4429 0.5495 13 6 3.8724 -4.9118 -0.5974 14 7 4.9720 -5.4586 -1.2714 15 6 5.5379 -6.5974 -0.8251 16 8 5.0942 -7.1500 0.1630 17 6 6.6974 -7.1735 -1.5352 18 6 7.2055 -6.5425 -2.6732 19 6 8.2903 -7.0801 -3.3304 20 6 8.8726 -8.2549 -2.8684 21 7 9.9711 -8.8014 -3.5421 22 6 10.5779 -8.3191 -4.6490 23 7 11.5584 -9.1332 -4.9399 24 7 11.6079 -10.1016 -4.0980 25 7 10.6761 -9.9735 -3.2160 26 6 8.3664 -8.8884 -1.7393 27 6 7.2849 -8.3541 -1.0742 28 7 3.2317 -3.8157 -0.9295 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 1.5784 -4.7519 1.7362 33 1 3.5541 -6.3440 1.0674 34 1 5.3261 -5.0175 -2.0594 35 1 6.7511 -5.6320 -3.0350 36 1 8.6864 -6.5905 -4.2077 37 1 10.3052 -7.4255 -5.1910 38 1 8.8216 -9.8007 -1.3831 39 1 6.8920 -8.8470 -0.1973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172152440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = 187.231073 kcal Electronic energy + Delta-G solvation = -26462.935783 eV Core-core repulsion = 22410.206273 eV Total energy + Delta-G solvation = -4052.729510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.34957 -42.30114 -41.23665 -39.80294 -36.34444 -36.24865 -35.30252 -33.54620 -32.99793 -32.20108 -31.44390 -30.92909 -28.63085 -26.84448 -25.24011 -25.00556 -24.12314 -22.92554 -22.67098 -21.85934 -21.00454 -19.86907 -18.87972 -18.67883 -18.09313 -17.76545 -17.24435 -17.19932 -16.57560 -16.50808 -16.00706 -15.92984 -15.55216 -15.33857 -14.77085 -14.58543 -14.51872 -14.36776 -14.22557 -14.11550 -13.81594 -13.67642 -13.37203 -12.93304 -12.72946 -12.64251 -12.32513 -12.29459 -12.18928 -12.07355 -11.68723 -11.65216 -11.39541 -11.05860 -10.71608 -10.29858 -9.93179 -9.75428 -9.12856 -8.32357 -6.46253 -1.04248 0.10756 0.16282 0.64384 1.02359 1.15086 1.30541 1.38613 1.40367 1.52336 1.54765 2.15175 2.26727 2.39908 2.64440 2.94188 2.99880 3.25499 3.40835 3.60588 3.69040 3.78727 3.98286 3.99712 4.17633 4.22860 4.31137 4.40948 4.72060 4.77855 4.81271 4.89596 4.92809 4.95199 5.03268 5.08635 5.19630 5.23433 5.57463 5.58072 5.80546 5.89990 6.20640 6.28565 6.65624 6.92044 7.06734 7.21845 7.23941 8.75466 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.001871 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.272537 B =14958.353427 C =16041.783947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.294 4.294 13 C 0.265 3.735 14 N -0.615 5.615 15 C 0.565 3.435 16 O -0.541 6.541 17 C -0.128 4.128 18 C -0.051 4.051 19 C -0.106 4.106 20 C 0.147 3.853 21 N -0.332 5.332 22 C 0.251 3.749 23 N -0.359 5.359 24 N -0.059 5.059 25 N -0.098 5.098 26 C -0.114 4.114 27 C -0.037 4.037 28 N -0.340 5.340 29 H 0.272 0.728 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.200 0.800 33 H 0.169 0.831 34 H 0.426 0.574 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.299 0.701 38 H 0.148 0.852 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.086 -14.151 -8.229 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.152 3.848 10 N -0.124 5.124 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.010 3.990 14 N -0.265 5.265 15 C 0.353 3.647 16 O -0.417 6.417 17 C -0.132 4.132 18 C -0.070 4.070 19 C -0.126 4.126 20 C 0.055 3.945 21 N -0.122 5.122 22 C -0.044 4.044 23 N -0.208 5.208 24 N -0.054 5.054 25 N -0.083 5.083 26 C -0.134 4.134 27 C -0.057 4.057 28 N -0.171 5.171 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.217 0.783 33 H 0.186 0.814 34 H 0.265 0.735 35 H 0.188 0.812 36 H 0.208 0.792 37 H 0.313 0.687 38 H 0.166 0.834 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 17.348 -14.558 -8.210 24.089 hybrid contribution -0.486 1.004 0.489 1.217 sum 16.862 -13.554 -7.722 22.971 Atomic orbital electron populations 1.70001 1.07227 1.28686 1.50049 1.25738 0.95824 1.02743 0.93955 0.85294 0.78495 0.78396 0.78196 1.19707 1.19873 1.19816 1.21426 0.93437 0.90870 1.52635 0.92764 1.19359 0.85694 0.81516 0.98184 1.48845 1.23865 1.20244 1.19490 1.23173 1.00532 0.88822 0.96728 1.21734 1.02041 1.06611 1.02061 1.19358 0.91580 0.93425 0.94635 1.42358 1.28231 1.25111 1.30830 1.18610 0.83110 0.79080 0.83851 1.90729 1.63457 1.60765 1.26794 1.19786 0.96731 0.98180 0.98513 1.21519 0.94166 0.99530 0.91800 1.21199 0.96064 0.92933 1.02453 1.18005 0.86762 0.95394 0.94360 1.49130 1.23602 1.18347 1.21098 1.28612 0.88281 1.01086 0.86439 1.74443 1.20722 1.02699 1.22932 1.78110 1.12682 1.15874 0.98759 1.82659 1.04608 1.00770 1.20281 1.20944 0.96807 1.01412 0.94264 1.21176 0.92749 0.92912 0.98824 1.77246 1.04541 1.18086 1.17254 0.91887 0.95909 0.92427 0.78313 0.81422 0.73484 0.81213 0.79171 0.68651 0.83430 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.83 13.29 21.45 0.28 -50.55 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -29.67 9.24 25.60 0.24 -29.44 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 13.53 6.26 85.63 0.54 14.07 16 10 N -0.34 -15.26 3.67 -351.84 -1.29 -16.55 16 11 C 0.06 2.08 11.43 83.52 0.95 3.04 16 12 C -0.29 -10.67 9.60 22.11 0.21 -10.46 16 13 C 0.26 9.60 8.11 133.35 1.08 10.68 16 14 N -0.62 -15.63 5.40 -310.27 -1.67 -17.30 16 15 C 0.56 13.29 7.73 86.74 0.67 13.96 16 16 O -0.54 -16.47 13.46 -4.01 -0.05 -16.53 16 17 C -0.13 -1.87 5.87 -20.08 -0.12 -1.99 16 18 C -0.05 -0.36 9.53 22.51 0.21 -0.14 16 19 C -0.11 -0.36 9.47 22.34 0.21 -0.15 16 20 C 0.15 1.36 6.71 38.22 0.26 1.61 16 21 N -0.33 -3.86 3.85 -190.94 -0.73 -4.60 16 22 C 0.25 1.81 12.15 180.17 2.19 4.00 16 23 N -0.36 -5.92 12.15 -60.10 -0.73 -6.65 16 24 N -0.06 -1.26 13.38 37.02 0.50 -0.76 16 25 N -0.10 -1.86 13.31 37.02 0.49 -1.37 16 26 C -0.11 -1.36 9.68 22.34 0.22 -1.14 16 27 C -0.04 -0.52 9.59 22.51 0.22 -0.30 16 28 N -0.34 -14.70 12.42 -54.48 -0.68 -15.38 16 29 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 2.82 8.07 -2.39 -0.02 2.80 16 32 H 0.20 5.83 8.06 -2.91 -0.02 5.81 16 33 H 0.17 5.85 5.91 -2.91 -0.02 5.83 16 34 H 0.43 7.66 6.85 -92.71 -0.63 7.03 16 35 H 0.17 0.38 6.39 -2.91 -0.02 0.36 16 36 H 0.19 -1.15 6.86 -2.91 -0.02 -1.17 16 37 H 0.30 -1.98 7.17 -2.91 -0.02 -2.00 16 38 H 0.15 1.77 7.75 -2.91 -0.02 1.75 16 39 H 0.15 2.19 7.64 -2.91 -0.02 2.17 16 Total: -1.00 -78.75 351.58 5.99 -72.76 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.51 Total: 7.60 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 7.34 Total: 5.16 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -3.83 Total: -113.16 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -78.75 5.99 -72.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172152440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.990 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds