Wall clock time and date at job start Tue Mar 31 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47374 * 358.86554 * 3 2 1 5 5 N 1.46499 * 109.47254 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99723 * 265.09329 * 5 4 3 7 7 C 1.50700 * 109.46895 * 262.69673 * 6 5 4 8 8 H 1.08003 * 120.00143 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00009 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00209 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99980 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47053 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46881 * 119.99583 * 11 9 7 14 14 H 1.48498 * 109.46995 * 239.99493 * 11 9 7 15 15 C 1.34774 * 120.00020 * 85.09162 * 5 4 3 16 16 O 1.21514 * 120.00012 * 2.95443 * 15 5 4 17 17 C 1.48186 * 120.00159 * 182.95649 * 15 5 4 18 18 C 1.39097 * 119.70118 * 173.14216 * 17 15 5 19 19 C 1.39236 * 118.98461 * 179.72382 * 18 17 15 20 20 O 1.35749 * 120.81203 * 180.26225 * 19 18 17 21 21 C 1.42902 * 116.99754 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47144 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.47020 * 299.99679 * 22 21 20 24 24 F 1.39903 * 109.47080 * 59.99889 * 22 21 20 25 25 C 1.39213 * 118.36901 * 0.27989 * 19 18 17 26 26 C 1.38314 * 119.28921 * 359.97438 * 25 19 18 27 27 N 1.31604 * 120.97023 * 0.02562 * 26 25 19 28 28 H 1.08998 * 109.46886 * 238.86340 * 3 2 1 29 29 H 1.09005 * 109.47105 * 118.86562 * 3 2 1 30 30 H 1.09002 * 109.47166 * 59.99538 * 4 3 2 31 31 H 1.09005 * 109.47011 * 300.00065 * 4 3 2 32 32 H 1.08999 * 109.47480 * 22.69670 * 6 5 4 33 33 H 1.08997 * 109.47213 * 142.70154 * 6 5 4 34 34 H 0.97002 * 120.00125 * 180.02562 * 10 9 7 35 35 H 1.08007 * 120.50475 * 0.02562 * 18 17 15 36 36 H 1.09001 * 109.46557 * 299.99575 * 21 20 19 37 37 H 1.09001 * 109.47640 * 59.99033 * 21 20 19 38 38 H 1.09001 * 109.47343 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.35125 * 179.97438 * 25 19 18 40 40 H 1.08000 * 119.50863 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4413 0.0286 5 7 4.5837 -1.4406 0.0292 6 6 5.3167 -1.5736 -1.2322 7 6 5.7250 -3.0111 -1.4267 8 1 5.4649 -3.7516 -0.6847 9 6 6.4316 -3.3810 -2.5515 10 7 6.7488 -2.4794 -3.4548 11 14 6.9384 -5.1628 -2.7922 12 1 6.4640 -5.9722 -1.6411 13 1 6.3361 -5.6836 -4.0458 14 1 8.4182 -5.2489 -2.8809 15 6 5.2570 -1.3176 1.1902 16 8 4.6502 -1.2613 2.2414 17 6 6.7374 -1.2510 1.1847 18 6 7.4195 -0.9810 2.3665 19 6 8.8107 -0.9276 2.3455 20 8 9.5139 -0.6723 3.4782 21 6 10.9378 -0.6357 3.3634 22 6 11.5524 -0.3363 4.7321 23 9 11.0895 0.9018 5.1903 24 9 11.1831 -1.3365 5.6379 25 6 9.4626 -1.1421 1.1343 26 6 8.7148 -1.3999 -0.0003 27 7 7.4005 -1.4442 0.0504 28 1 2.9710 0.5322 0.8796 29 1 2.9711 0.4970 -0.9000 30 1 2.7556 -1.9729 -0.8510 31 1 2.7556 -1.9376 0.9286 32 1 4.6775 -1.2625 -2.0585 33 1 6.2060 -0.9440 -1.2038 34 1 7.2456 -2.7396 -4.2463 35 1 6.8784 -0.8202 3.2873 36 1 11.2983 -1.6003 3.0059 37 1 11.2256 0.1438 2.6579 38 1 12.6385 -0.3088 4.6446 39 1 10.5408 -1.1076 1.0813 40 1 9.2169 -1.5664 -0.9419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182934186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:32 Heat of formation + Delta-G solvation = -105.161629 kcal Electronic energy + Delta-G solvation = -28821.750336 eV Core-core repulsion = 24273.359790 eV Total energy + Delta-G solvation = -4548.390546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.88418 -47.94418 -41.84929 -40.58155 -39.01787 -37.90551 -36.77167 -34.53250 -33.10853 -32.76403 -31.72247 -30.80514 -28.82912 -26.55081 -25.01821 -24.60155 -24.26798 -23.24269 -20.95091 -19.32057 -18.78103 -18.46867 -18.40955 -18.23592 -17.91339 -17.65634 -16.99431 -16.69237 -16.54114 -16.37924 -16.16946 -15.92014 -15.63055 -15.36556 -14.86366 -14.75310 -14.57196 -14.45717 -14.31186 -14.16758 -14.00114 -13.61992 -13.54683 -13.48660 -13.21921 -12.90750 -12.68899 -12.66180 -12.51594 -12.39812 -12.06787 -11.93920 -11.77294 -11.53008 -11.08421 -10.44356 -10.19584 -9.87407 -9.69889 -9.33269 -7.94694 -5.96929 -0.25855 0.41057 1.43963 1.50422 1.56907 1.60845 1.73607 1.78522 1.87933 2.29605 2.56568 2.83286 2.98837 3.15200 3.32236 3.40191 3.43361 3.52335 3.67880 3.87748 4.01772 4.04789 4.13464 4.15357 4.23681 4.32342 4.41220 4.54216 4.68822 4.82377 4.88885 5.00065 5.02471 5.10474 5.41740 5.68274 5.99957 6.03861 6.14950 6.40815 6.54054 6.56784 6.98789 7.13498 7.35363 7.65405 9.12625 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.003574 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.060846 B = 7833.176715 C =10261.064876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.119 3.881 5 N -0.575 5.575 6 C 0.240 3.760 7 C -0.497 4.497 8 H 0.030 0.970 9 C 0.040 3.960 10 N -0.910 5.910 11 Si 0.927 3.073 12 H -0.286 1.286 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.564 3.436 16 O -0.579 6.579 17 C 0.095 3.905 18 C -0.158 4.158 19 C 0.153 3.847 20 O -0.319 6.319 21 C -0.012 4.012 22 C 0.266 3.734 23 F -0.218 7.218 24 F -0.220 7.220 25 C -0.221 4.221 26 C 0.118 3.882 27 N -0.432 5.432 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.086 0.914 34 H 0.260 0.740 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.190 0.810 39 H 0.183 0.817 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.223 6.282 9.097 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.005 4.005 5 N -0.303 5.303 6 C 0.120 3.880 7 C -0.537 4.537 8 H 0.049 0.951 9 C -0.159 4.159 10 N -0.551 5.551 11 Si 0.755 3.245 12 H -0.212 1.212 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.352 3.648 16 O -0.461 6.461 17 C -0.042 4.042 18 C -0.180 4.180 19 C 0.100 3.900 20 O -0.232 6.232 21 C -0.087 4.087 22 C 0.213 3.787 23 F -0.200 7.200 24 F -0.201 7.201 25 C -0.241 4.241 26 C -0.040 4.040 27 N -0.146 5.146 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.206 0.794 39 H 0.200 0.800 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.719 6.207 8.945 16.742 hybrid contribution 0.952 -1.146 0.382 1.538 sum 13.670 5.060 9.327 17.306 Atomic orbital electron populations 1.81203 1.14221 1.10033 1.11184 1.29163 0.95009 0.91721 0.91199 1.19686 0.80204 0.99628 1.07561 1.21309 0.79947 0.95273 1.04009 1.48155 1.06151 1.67440 1.08508 1.19929 0.92813 0.97257 0.78013 1.21318 1.33932 0.94064 1.04337 0.95139 1.25103 0.96148 0.98766 0.95909 1.69976 1.40764 1.33687 1.10682 0.86019 0.78258 0.83102 0.77123 1.21197 1.21339 1.20301 1.18089 0.86441 0.76714 0.83528 1.90683 1.69536 1.54104 1.31792 1.20884 0.94342 0.99416 0.89602 1.21295 0.92338 1.04667 0.99694 1.18957 0.90699 0.94257 0.86087 1.86094 1.20553 1.85956 1.30573 1.24587 0.78350 1.07264 0.98469 1.22779 1.01428 0.70820 0.83687 1.92991 1.91721 1.44724 1.90539 1.92994 1.94141 1.62172 1.70826 1.22693 1.03482 1.06148 0.91788 1.23154 0.89206 0.92662 0.99015 1.68653 1.10191 1.10456 1.25296 0.86249 0.84901 0.88926 0.90630 0.96389 0.89737 0.93054 0.84206 0.86177 0.85774 0.79368 0.80000 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.05 18.54 20.01 0.37 -15.68 16 2 C 0.25 6.85 15.43 89.44 1.38 8.23 16 3 C -0.03 -0.74 5.99 28.79 0.17 -0.56 16 4 C 0.12 3.77 5.31 86.38 0.46 4.22 16 5 N -0.57 -21.96 2.49 -829.19 -2.06 -24.03 16 6 C 0.24 10.42 4.75 85.63 0.41 10.83 16 7 C -0.50 -24.40 7.94 25.60 0.20 -24.20 16 8 H 0.03 1.60 7.81 -2.91 -0.02 1.58 16 9 C 0.04 1.99 5.46 84.66 0.46 2.45 16 10 N -0.91 -46.21 13.29 21.45 0.28 -45.92 16 11 Si 0.93 40.58 29.54 68.60 2.03 42.61 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 15 C 0.56 22.44 7.55 86.89 0.66 23.10 16 16 O -0.58 -24.23 15.98 -3.76 -0.06 -24.29 16 17 C 0.09 3.55 6.62 41.85 0.28 3.82 16 18 C -0.16 -5.18 9.60 22.72 0.22 -4.96 16 19 C 0.15 4.02 6.73 22.74 0.15 4.17 16 20 O -0.32 -7.35 10.04 -90.74 -0.91 -8.26 16 21 C -0.01 -0.13 4.99 71.98 0.36 0.23 16 22 C 0.27 2.84 5.63 71.98 0.41 3.24 16 23 F -0.22 -3.90 17.28 44.97 0.78 -3.12 16 24 F -0.22 -4.06 17.28 44.97 0.78 -3.28 16 25 C -0.22 -4.88 9.12 22.52 0.21 -4.68 16 26 C 0.12 3.52 11.17 84.74 0.95 4.47 16 27 N -0.43 -16.30 4.97 -185.14 -0.92 -17.22 16 28 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.09 2.89 8.03 -2.39 -0.02 2.87 16 31 H 0.08 2.47 7.53 -2.38 -0.02 2.46 16 32 H 0.02 0.81 8.02 -2.39 -0.02 0.80 16 33 H 0.09 3.83 5.26 -2.86 -0.02 3.81 16 34 H 0.26 12.68 8.31 -92.71 -0.77 11.91 16 35 H 0.14 4.69 7.66 -2.91 -0.02 4.67 16 36 H 0.12 0.79 7.71 -2.39 -0.02 0.77 16 37 H 0.12 0.71 7.71 -2.39 -0.02 0.69 16 38 H 0.19 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.18 2.15 6.45 -2.91 -0.02 2.13 16 40 H 0.17 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -69.84 363.96 7.68 -62.16 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.10 Total: 6.66 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: 6.30 Total: 30.36 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -2.33 Total: -102.85 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.97 Total: -32.54 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 1.55 Total: -6.40 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -69.84 7.68 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182934186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.004 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds