Wall clock time and date at job start Tue Mar 31 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 116.99771 * 2 1 4 4 O 1.20821 * 120.00156 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99666 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.86766 * 56.01622 * 5 3 2 7 7 C 1.54095 * 109.88469 * 295.00581 * 5 3 2 8 8 C 1.54810 * 104.18829 * 238.54649 * 7 5 3 9 9 C 1.54998 * 102.12310 * 339.09982 * 8 7 5 10 10 H 1.08997 * 110.61889 * 278.54025 * 9 8 7 11 11 C 1.50703 * 110.61902 * 155.54322 * 9 8 7 12 12 O 1.21282 * 119.99663 * 252.19364 * 11 9 8 13 13 N 1.34773 * 120.00193 * 72.18728 * 11 9 8 14 14 C 1.46495 * 120.00295 * 185.42046 * 13 11 9 15 15 C 1.50693 * 109.47148 * 90.00140 * 14 13 11 16 16 H 1.07995 * 120.00050 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99779 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47241 * 60.00406 * 19 17 15 21 21 H 1.48499 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47263 * 300.00150 * 19 17 15 23 23 C 1.46506 * 119.99742 * 5.42288 * 13 11 9 24 24 C 1.53001 * 109.47181 * 95.41058 * 23 13 11 25 25 F 1.39903 * 109.47160 * 59.99747 * 24 23 13 26 26 F 1.39902 * 109.47194 * 180.02562 * 24 23 13 27 27 F 1.39903 * 109.46898 * 299.99725 * 24 23 13 28 28 O 1.43749 * 109.87783 * 177.16826 * 5 3 2 29 29 H 1.08995 * 109.47054 * 299.99791 * 1 2 3 30 30 H 1.08997 * 109.47160 * 60.00031 * 1 2 3 31 31 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 32 32 H 1.08989 * 110.48852 * 119.86744 * 7 5 3 33 33 H 1.09000 * 110.48442 * 357.21806 * 7 5 3 34 34 H 1.09002 * 110.90780 * 97.31083 * 8 7 5 35 35 H 1.08996 * 110.90584 * 220.88366 * 8 7 5 36 36 H 1.09008 * 109.47112 * 210.00849 * 14 13 11 37 37 H 1.09000 * 109.46943 * 329.99894 * 14 13 11 38 38 H 0.96992 * 120.00299 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.47140 * 215.41032 * 23 13 11 40 40 H 1.09001 * 109.47138 * 335.40666 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9666 0.7218 -0.8492 7 6 4.1212 0.6908 1.3142 8 6 4.9266 1.8568 1.9374 9 6 5.1994 2.7585 0.7066 10 1 6.0509 2.3846 0.1381 11 6 5.4304 4.1849 1.1345 12 8 4.5856 5.0275 0.9171 13 7 6.5756 4.5242 1.7588 14 6 6.7511 5.8819 2.2804 15 6 6.2540 5.9421 3.7017 16 1 5.8483 5.0575 4.1699 17 6 6.3181 7.1265 4.4048 18 7 6.8126 8.2037 3.8349 19 14 5.7026 7.2010 6.1670 20 1 6.4747 6.2460 7.0018 21 1 5.8804 8.5773 6.6956 22 1 4.2628 6.8392 6.2041 23 6 7.6450 3.5352 1.9159 24 6 8.6567 3.6932 0.7790 25 9 9.2029 4.9806 0.8163 26 9 9.6776 2.7484 0.9286 27 9 8.0143 3.4945 -0.4478 28 8 3.9838 2.6487 -0.0663 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.7744 -0.1571 1.1088 33 1 3.3060 0.3946 1.9743 34 1 4.3323 2.3854 2.6828 35 1 5.8599 1.4970 2.3706 36 1 7.8079 6.1477 2.2534 37 1 6.1845 6.5827 1.6673 38 1 6.8580 9.0367 4.3297 39 1 8.1455 3.6899 2.8717 40 1 7.2194 2.5322 1.8868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188006769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:05 Heat of formation + Delta-G solvation = -304.431963 kcal Electronic energy + Delta-G solvation = -31281.486095 eV Core-core repulsion = 26261.392563 eV Total energy + Delta-G solvation = -5020.093532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88077 -47.44586 -47.30659 -40.99017 -39.87866 -38.26010 -36.48715 -35.41772 -32.92523 -32.40764 -30.81933 -29.35476 -28.06341 -26.99737 -24.75454 -23.38548 -22.74521 -22.11959 -21.03859 -19.34088 -18.43681 -18.34148 -17.95633 -17.51096 -17.19145 -16.92846 -16.51040 -16.28293 -15.84383 -15.60483 -15.01191 -14.58935 -14.42024 -14.21699 -14.20172 -13.97777 -13.80917 -13.77220 -13.51632 -13.47423 -13.39547 -13.01389 -12.62314 -12.45579 -12.33862 -12.07920 -12.01628 -11.93830 -11.55895 -11.30161 -11.26240 -11.01928 -10.99352 -10.66941 -10.60901 -10.26168 -9.97895 -9.83139 -9.10066 -8.50954 -8.09468 -6.12434 -4.18975 2.03061 2.17947 2.72142 3.13505 3.21827 3.27070 3.32966 3.36100 3.80191 4.03506 4.10622 4.15336 4.36138 4.38319 4.49288 4.55102 4.67387 4.84959 4.87931 4.88505 4.95571 5.00008 5.13797 5.22856 5.26511 5.31139 5.41994 5.49189 5.57961 5.86742 6.12216 6.38244 6.82964 7.20547 7.33953 7.61465 7.81256 7.97602 8.09189 8.66525 8.85250 9.46357 10.95906 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.004244 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.484447 B = 6595.629683 C = 8562.717818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.455 3.545 4 O -0.474 6.474 5 C 0.085 3.915 6 H 0.113 0.887 7 C -0.139 4.139 8 C -0.148 4.148 9 C 0.051 3.949 10 H 0.099 0.901 11 C 0.520 3.480 12 O -0.492 6.492 13 N -0.593 5.593 14 C 0.242 3.758 15 C -0.537 4.537 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.067 3.933 24 C 0.428 3.572 25 F -0.171 7.171 26 F -0.187 7.187 27 F -0.187 7.187 28 O -0.315 6.315 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -20.779 -5.612 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.358 6.358 5 C 0.026 3.974 6 H 0.130 0.870 7 C -0.177 4.177 8 C -0.185 4.185 9 C -0.010 4.010 10 H 0.117 0.883 11 C 0.305 3.695 12 O -0.364 6.364 13 N -0.327 5.327 14 C 0.124 3.876 15 C -0.576 4.576 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.061 4.061 24 C 0.372 3.628 25 F -0.153 7.153 26 F -0.169 7.169 27 F -0.168 7.168 28 O -0.233 6.233 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.923 -19.560 -5.843 20.505 hybrid contribution -0.187 0.027 0.821 0.842 sum -2.110 -19.533 -5.022 20.279 Atomic orbital electron populations 1.23283 0.75996 1.03652 1.02846 1.86453 1.23597 1.33038 1.84664 1.23545 0.91591 0.81751 0.73622 1.90754 1.66432 1.36152 1.42471 1.22214 0.87851 0.86379 1.00994 0.86976 1.22903 1.01035 0.98962 0.94773 1.23254 1.01979 0.95433 0.97876 1.23326 0.89307 0.95706 0.92687 0.88335 1.19795 0.82513 0.88706 0.78515 1.90759 1.42669 1.50717 1.52273 1.48117 1.12938 1.14572 1.57045 1.19575 0.98547 0.75063 0.94427 1.21327 1.42513 0.96442 0.97292 0.92248 1.24925 0.94967 0.95297 0.98632 1.69917 1.44687 1.00716 1.37381 0.86537 0.79492 0.77197 0.84077 1.20153 1.21090 1.20147 1.22770 0.89867 0.96341 0.97148 1.21658 0.82231 0.74204 0.84735 1.93234 1.86845 1.38689 1.96491 1.93159 1.62562 1.65473 1.95720 1.93153 1.81377 1.94776 1.47539 1.89164 1.40471 1.22991 1.70643 0.91747 0.91794 0.87945 0.88386 0.89320 0.88744 0.88433 0.93655 0.93096 0.92433 0.85042 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.81 10.56 -39.25 -0.41 -4.23 16 3 C 0.45 6.21 7.06 36.01 0.25 6.47 16 4 O -0.47 -8.64 16.27 -25.38 -0.41 -9.05 16 5 C 0.09 1.01 3.96 -27.31 -0.11 0.91 16 6 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.14 -1.24 6.63 -25.21 -0.17 -1.40 16 8 C -0.15 -1.68 6.08 -24.72 -0.15 -1.83 16 9 C 0.05 0.76 2.75 -26.83 -0.07 0.69 16 10 H 0.10 1.20 6.17 -51.93 -0.32 0.88 16 11 C 0.52 10.71 6.81 -10.99 -0.07 10.63 16 12 O -0.49 -12.89 16.13 -13.39 -0.22 -13.10 16 13 N -0.59 -11.69 2.37 -175.06 -0.42 -12.11 16 14 C 0.24 6.03 4.99 -5.20 -0.03 6.01 16 15 C -0.54 -14.42 9.39 -34.44 -0.32 -14.74 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.07 0.93 5.22 -4.04 -0.02 0.91 16 24 C 0.43 6.17 3.29 37.16 0.12 6.29 16 25 F -0.17 -2.98 15.73 2.25 0.04 -2.95 16 26 F -0.19 -2.36 17.32 2.25 0.04 -2.32 16 27 F -0.19 -2.78 15.65 2.25 0.04 -2.74 16 28 O -0.32 -5.38 10.03 -64.28 -0.64 -6.03 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 34 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 35 H 0.10 0.78 6.48 -51.93 -0.34 0.44 16 36 H 0.05 1.14 6.77 -51.92 -0.35 0.79 16 37 H 0.05 1.47 7.35 -51.93 -0.38 1.09 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 1.74 8.11 -51.93 -0.42 1.32 16 40 H 0.11 1.11 4.41 -51.93 -0.23 0.88 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -36.65 352.25 -5.08 -41.74 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.52 Total: -2.55 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 0.40 Total: 16.98 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.32 Total: -37.20 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.69 Total: -32.41 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.11 Total: -8.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.65 -5.08 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -262.694 kcal (2) G-P(sol) polarization free energy of solvation -36.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -304.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds