Wall clock time and date at job start Tue Mar 31 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 116.99771 * 2 1 4 4 O 1.20821 * 120.00156 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99666 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.86766 * 56.01622 * 5 3 2 7 7 C 1.54095 * 109.88469 * 295.00581 * 5 3 2 8 8 C 1.54810 * 104.18829 * 238.54649 * 7 5 3 9 9 C 1.54998 * 102.12310 * 339.09982 * 8 7 5 10 10 H 1.08997 * 110.61889 * 278.54025 * 9 8 7 11 11 C 1.50703 * 110.61902 * 155.54322 * 9 8 7 12 12 O 1.21282 * 119.99663 * 252.19364 * 11 9 8 13 13 N 1.34773 * 120.00193 * 72.18728 * 11 9 8 14 14 C 1.46495 * 120.00295 * 185.42046 * 13 11 9 15 15 C 1.50693 * 109.47148 * 90.00140 * 14 13 11 16 16 H 1.07995 * 120.00050 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99779 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47241 * 60.00406 * 19 17 15 21 21 H 1.48499 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47263 * 300.00150 * 19 17 15 23 23 C 1.46506 * 119.99742 * 5.42288 * 13 11 9 24 24 C 1.53001 * 109.47181 * 95.41058 * 23 13 11 25 25 F 1.39903 * 109.47160 * 59.99747 * 24 23 13 26 26 F 1.39902 * 109.47194 * 180.02562 * 24 23 13 27 27 F 1.39903 * 109.46898 * 299.99725 * 24 23 13 28 28 O 1.43749 * 109.87783 * 177.16826 * 5 3 2 29 29 H 1.08995 * 109.47054 * 299.99791 * 1 2 3 30 30 H 1.08997 * 109.47160 * 60.00031 * 1 2 3 31 31 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 32 32 H 1.08989 * 110.48852 * 119.86744 * 7 5 3 33 33 H 1.09000 * 110.48442 * 357.21806 * 7 5 3 34 34 H 1.09002 * 110.90780 * 97.31083 * 8 7 5 35 35 H 1.08996 * 110.90584 * 220.88366 * 8 7 5 36 36 H 1.09008 * 109.47112 * 210.00849 * 14 13 11 37 37 H 1.09000 * 109.46943 * 329.99894 * 14 13 11 38 38 H 0.96992 * 120.00299 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.47140 * 215.41032 * 23 13 11 40 40 H 1.09001 * 109.47138 * 335.40666 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9666 0.7218 -0.8492 7 6 4.1212 0.6908 1.3142 8 6 4.9266 1.8568 1.9374 9 6 5.1994 2.7585 0.7066 10 1 6.0509 2.3846 0.1381 11 6 5.4304 4.1849 1.1345 12 8 4.5856 5.0275 0.9171 13 7 6.5756 4.5242 1.7588 14 6 6.7511 5.8819 2.2804 15 6 6.2540 5.9421 3.7017 16 1 5.8483 5.0575 4.1699 17 6 6.3181 7.1265 4.4048 18 7 6.8126 8.2037 3.8349 19 14 5.7026 7.2010 6.1670 20 1 6.4747 6.2460 7.0018 21 1 5.8804 8.5773 6.6956 22 1 4.2628 6.8392 6.2041 23 6 7.6450 3.5352 1.9159 24 6 8.6567 3.6932 0.7790 25 9 9.2029 4.9806 0.8163 26 9 9.6776 2.7484 0.9286 27 9 8.0143 3.4945 -0.4478 28 8 3.9838 2.6487 -0.0663 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.7744 -0.1571 1.1088 33 1 3.3060 0.3946 1.9743 34 1 4.3323 2.3854 2.6828 35 1 5.8599 1.4970 2.3706 36 1 7.8079 6.1477 2.2534 37 1 6.1845 6.5827 1.6673 38 1 6.8580 9.0367 4.3297 39 1 8.1455 3.6899 2.8717 40 1 7.2194 2.5322 1.8868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:04 Heat of formation + Delta-G solvation = -329.775221 kcal Electronic energy + Delta-G solvation = -31282.585061 eV Core-core repulsion = 26261.392563 eV Total energy + Delta-G solvation = -5021.192498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.06267 -48.58735 -48.54705 -42.04877 -41.16051 -39.55564 -37.52538 -37.08192 -34.91593 -33.40191 -31.99616 -30.80882 -29.22479 -28.34034 -26.10655 -24.69792 -24.25432 -23.14566 -21.96667 -20.77434 -19.61231 -19.52245 -19.21188 -18.80009 -18.39192 -18.14489 -17.81680 -17.66955 -17.14170 -16.89520 -16.36398 -16.07583 -15.82537 -15.48473 -15.41975 -15.09297 -14.97993 -14.76779 -14.70502 -14.68894 -14.50181 -14.34649 -14.18594 -13.69024 -13.53669 -13.43767 -13.15549 -13.03159 -12.93483 -12.79684 -12.58108 -12.51388 -12.22497 -12.09186 -11.87792 -11.80761 -11.62624 -11.06764 -10.67010 -10.63927 -9.83891 -8.23461 -6.38192 1.02190 1.22378 1.36591 1.39769 1.43718 1.50127 1.74700 1.95658 2.39152 2.71954 2.86095 3.01588 3.06772 3.12038 3.36753 3.47640 3.67165 3.73396 3.84107 3.91500 4.00055 4.24664 4.29207 4.30593 4.32622 4.52267 4.68343 4.78660 4.88648 4.90378 5.01444 5.18223 5.21707 5.35007 5.51881 5.72937 5.99952 6.34817 6.64283 6.70525 7.10930 7.33359 8.84909 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.004244 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.484447 B = 6595.629683 C = 8562.717818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.455 3.545 4 O -0.536 6.536 5 C 0.075 3.925 6 H 0.155 0.845 7 C -0.124 4.124 8 C -0.146 4.146 9 C 0.058 3.942 10 H 0.137 0.863 11 C 0.509 3.491 12 O -0.568 6.568 13 N -0.595 5.595 14 C 0.258 3.742 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.252 1.252 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.062 3.938 24 C 0.432 3.568 25 F -0.194 7.194 26 F -0.169 7.169 27 F -0.189 7.189 28 O -0.364 6.364 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.143 0.857 36 H 0.039 0.961 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.145 0.855 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -25.287 -4.494 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.298 3.702 4 O -0.424 6.424 5 C 0.016 3.984 6 H 0.172 0.828 7 C -0.162 4.162 8 C -0.184 4.184 9 C -0.003 4.003 10 H 0.154 0.846 11 C 0.297 3.703 12 O -0.446 6.446 13 N -0.327 5.327 14 C 0.138 3.862 15 C -0.585 4.585 16 H 0.085 0.915 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.792 3.208 20 H -0.176 1.176 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.063 4.063 24 C 0.376 3.624 25 F -0.176 7.176 26 F -0.151 7.151 27 F -0.170 7.170 28 O -0.283 6.283 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.057 0.943 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.163 0.837 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.833 -24.166 -4.723 24.637 hybrid contribution -0.545 1.367 0.387 1.522 sum -1.377 -22.798 -4.336 23.248 Atomic orbital electron populations 1.23596 0.74655 1.06095 1.02235 1.86456 1.24879 1.31215 1.83766 1.24169 0.92623 0.81594 0.71799 1.90737 1.67847 1.38230 1.45602 1.22752 0.86532 0.84595 1.04514 0.82764 1.23010 1.01502 0.99079 0.92561 1.23360 1.04106 0.95236 0.95691 1.23408 0.90225 0.91720 0.94917 0.84564 1.20988 0.81380 0.90876 0.77023 1.90715 1.45145 1.53416 1.55279 1.47927 1.14558 1.13865 1.56345 1.18972 0.96808 0.77411 0.93056 1.21681 1.42022 0.96789 0.97964 0.91499 1.25876 0.95096 0.94937 1.03185 1.70060 1.46131 1.01348 1.39205 0.85460 0.78584 0.77687 0.79034 1.17577 1.20910 1.20671 1.23205 0.88425 0.97049 0.97599 1.21584 0.82508 0.73602 0.84660 1.93198 1.87224 1.40602 1.96582 1.93198 1.61781 1.64499 1.95616 1.93154 1.81438 1.94693 1.47749 1.89127 1.41450 1.26566 1.71150 0.92563 0.92391 0.83854 0.83001 0.89060 0.91960 0.83900 0.94296 0.98663 0.92417 0.83733 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -6.59 10.56 -51.37 -0.54 -7.14 16 3 C 0.45 12.03 7.06 71.24 0.50 12.54 16 4 O -0.54 -20.29 16.27 28.32 0.46 -19.83 16 5 C 0.07 1.57 3.96 30.22 0.12 1.69 16 6 H 0.16 1.92 8.14 -2.38 -0.02 1.90 16 7 C -0.12 -1.61 6.63 31.58 0.21 -1.40 16 8 C -0.15 -2.79 6.08 31.90 0.19 -2.59 16 9 C 0.06 1.62 2.75 30.53 0.08 1.70 16 10 H 0.14 2.75 6.17 -2.39 -0.01 2.74 16 11 C 0.51 21.44 6.81 87.66 0.60 22.04 16 12 O -0.57 -31.90 16.13 15.08 0.24 -31.66 16 13 N -0.60 -23.62 2.37 -826.15 -1.96 -25.58 16 14 C 0.26 13.49 4.99 85.63 0.43 13.92 16 15 C -0.55 -29.98 9.39 25.60 0.24 -29.74 16 16 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 17 C 0.01 0.48 5.46 84.66 0.46 0.94 16 18 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 19 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 20 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 C 0.06 1.59 5.22 86.38 0.45 2.04 16 24 C 0.43 11.54 3.29 71.98 0.24 11.77 16 25 F -0.19 -6.75 15.73 44.97 0.71 -6.05 16 26 F -0.17 -3.67 17.32 44.97 0.78 -2.89 16 27 F -0.19 -5.21 15.65 44.97 0.70 -4.51 16 28 O -0.36 -12.28 10.03 -121.21 -1.22 -13.50 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.15 0.43 8.14 -2.39 -0.02 0.42 16 33 H 0.09 1.19 7.69 -2.39 -0.02 1.17 16 34 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 35 H 0.14 1.35 6.48 -2.39 -0.02 1.34 16 36 H 0.04 2.06 6.77 -2.38 -0.02 2.05 16 37 H 0.00 -0.30 7.35 -2.39 -0.02 -0.32 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.14 3.39 8.11 -2.39 -0.02 3.37 16 40 H 0.16 2.39 4.41 -2.39 -0.01 2.38 16 Total: -1.00 -90.22 352.25 7.30 -82.92 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.10 Total: 3.55 kcal Atomic # 6 Polarization: 29.78 SS G_CDS: 4.72 Total: 34.50 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.68 Total: -81.12 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -1.05 Total: -72.12 kcal Atomic # 9 Polarization: -15.63 SS G_CDS: 2.19 Total: -13.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -90.22 7.30 -82.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.857 kcal (2) G-P(sol) polarization free energy of solvation -90.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -337.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -329.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds