Wall clock time and date at job start Tue Mar 31 2020 22:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99807 * 2 1 4 4 O 1.20823 * 120.00395 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99904 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.89431 * 304.48451 * 5 3 2 7 7 C 1.54384 * 109.82969 * 65.41040 * 5 3 2 8 8 C 1.55415 * 102.30812 * 140.80215 * 7 5 3 9 9 C 1.54949 * 100.89168 * 325.98635 * 8 7 5 10 10 H 1.09000 * 110.31234 * 277.36139 * 9 8 7 11 11 C 1.50706 * 110.30784 * 155.28636 * 9 8 7 12 12 O 1.21273 * 120.00391 * 254.66233 * 11 9 8 13 13 N 1.34775 * 119.99355 * 74.66182 * 11 9 8 14 14 C 1.46497 * 120.00483 * 5.00274 * 13 11 9 15 15 C 1.50705 * 109.47210 * 269.99757 * 14 13 11 16 16 H 1.07995 * 119.99477 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00252 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47396 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47091 * 300.00388 * 19 17 15 22 22 H 1.48501 * 109.47254 * 60.00235 * 19 17 15 23 23 C 1.46504 * 119.99569 * 185.00317 * 13 11 9 24 24 C 1.52999 * 109.46848 * 268.44193 * 23 13 11 25 25 F 1.39901 * 109.47175 * 63.77479 * 24 23 13 26 26 F 1.39899 * 109.47173 * 183.77032 * 24 23 13 27 27 F 1.39903 * 109.47601 * 303.77106 * 24 23 13 28 28 O 1.43237 * 109.83241 * 183.54691 * 5 3 2 29 29 H 1.08996 * 109.46944 * 59.99824 * 1 2 3 30 30 H 1.09006 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47120 * 299.99982 * 1 2 3 32 32 H 1.08998 * 110.84832 * 259.06409 * 7 5 3 33 33 H 1.09004 * 110.85050 * 22.47864 * 7 5 3 34 34 H 1.09006 * 111.20880 * 208.06579 * 8 7 5 35 35 H 1.08997 * 111.08995 * 83.87048 * 8 7 5 36 36 H 1.08996 * 109.47316 * 149.99778 * 14 13 11 37 37 H 1.08995 * 109.47123 * 29.99753 * 14 13 11 38 38 H 0.97008 * 119.99641 * 359.97438 * 18 17 15 39 39 H 1.08993 * 109.47686 * 28.44213 * 23 13 11 40 40 H 1.08998 * 109.46923 * 148.44622 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9668 0.7149 0.8457 7 6 4.1215 0.6985 -1.3197 8 6 5.2917 1.6701 -1.6391 9 6 4.7226 3.0037 -1.0927 10 1 4.0636 3.4638 -1.8290 11 6 5.8448 3.9442 -0.7360 12 8 6.1288 4.1359 0.4274 13 7 6.5328 4.5722 -1.7099 14 6 6.1209 4.4270 -3.1083 15 6 6.8270 3.2443 -3.7198 16 1 7.5135 2.6592 -3.1260 17 6 6.5957 2.9087 -5.0369 18 7 5.7592 3.6210 -5.7598 19 14 7.4703 1.4424 -5.7946 20 1 7.0529 1.2953 -7.2121 21 1 8.9387 1.6548 -5.7310 22 1 7.1152 0.2117 -5.0433 23 6 7.6928 5.4001 -1.3702 24 6 7.2418 6.8464 -1.1560 25 9 6.3783 6.9077 -0.0570 26 9 8.3596 7.6528 -0.9163 27 9 6.5751 7.3012 -2.2988 28 8 3.9812 2.6433 0.0838 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.4885 -0.3176 -1.1754 33 1 3.3654 0.7282 -2.1043 34 1 5.4722 1.7306 -2.7125 35 1 6.1976 1.3817 -1.1060 36 1 6.3814 5.3305 -3.6595 37 1 5.0432 4.2708 -3.1552 38 1 5.3047 4.3823 -5.3662 39 1 8.1527 5.0239 -0.4565 40 1 8.4170 5.3621 -2.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188006794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:07 Heat of formation + Delta-G solvation = -315.524317 kcal Electronic energy + Delta-G solvation = -31491.279983 eV Core-core repulsion = 26470.705451 eV Total energy + Delta-G solvation = -5020.574533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.73490 -47.29383 -47.17384 -40.84333 -39.82610 -38.23255 -36.35067 -35.57866 -33.13512 -32.13094 -30.98236 -29.20346 -27.65605 -26.75627 -24.58948 -23.34676 -22.81735 -21.84266 -20.85468 -19.28355 -18.27287 -18.15991 -17.98697 -17.64550 -17.16078 -16.91534 -16.46342 -16.32513 -16.01039 -15.26116 -15.11181 -14.21323 -14.11683 -14.07528 -13.99247 -13.85252 -13.67833 -13.55552 -13.37457 -13.36930 -13.19439 -13.11462 -12.57179 -12.35136 -12.26486 -11.95930 -11.91368 -11.74877 -11.70394 -11.43478 -11.10902 -10.90000 -10.88719 -10.78345 -10.47168 -10.30248 -9.78580 -9.55619 -9.17062 -8.67016 -8.14126 -6.69331 -4.47012 2.15708 2.39059 2.76408 3.07701 3.23723 3.27392 3.28744 3.44830 4.00484 4.18743 4.26420 4.36713 4.44840 4.60643 4.69176 4.84210 4.97679 4.98962 5.04320 5.04613 5.13687 5.33763 5.36272 5.40002 5.52104 5.58628 5.74753 5.80748 6.14461 6.25940 6.26335 6.51358 6.61221 6.82115 7.00202 7.60771 7.70512 7.73677 8.11764 8.43999 8.53760 9.22848 10.66565 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.004917 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.073403 B = 5693.129239 C = 8022.801071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.447 3.553 4 O -0.489 6.489 5 C 0.092 3.908 6 H 0.121 0.879 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.072 3.928 10 H 0.100 0.900 11 C 0.526 3.474 12 O -0.533 6.533 13 N -0.589 5.589 14 C 0.219 3.781 15 C -0.623 4.623 16 H 0.062 0.938 17 C 0.028 3.972 18 N -0.895 5.895 19 Si 1.064 2.936 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.085 3.915 24 C 0.430 3.570 25 F -0.178 7.178 26 F -0.189 7.189 27 F -0.181 7.181 28 O -0.328 6.328 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -5.863 6.972 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.288 3.712 4 O -0.374 6.374 5 C 0.032 3.968 6 H 0.139 0.861 7 C -0.178 4.178 8 C -0.178 4.178 9 C 0.012 3.988 10 H 0.117 0.883 11 C 0.313 3.687 12 O -0.409 6.409 13 N -0.321 5.321 14 C 0.100 3.900 15 C -0.661 4.661 16 H 0.080 0.920 17 C -0.179 4.179 18 N -0.530 5.530 19 Si 0.892 3.108 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.042 4.042 24 C 0.374 3.626 25 F -0.159 7.159 26 F -0.171 7.171 27 F -0.163 7.163 28 O -0.246 6.246 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.231 -6.155 6.349 9.119 hybrid contribution -0.512 1.265 1.221 1.831 sum -2.743 -4.890 7.570 9.420 Atomic orbital electron populations 1.23259 0.76425 1.03570 1.02615 1.86493 1.23341 1.33336 1.84402 1.24336 0.92453 0.81587 0.72805 1.90684 1.66730 1.36342 1.43675 1.22262 0.86344 0.86068 1.02096 0.86123 1.23153 0.98932 1.01166 0.94556 1.23573 0.97088 0.90072 1.07105 1.22847 0.92294 0.96632 0.87069 0.88262 1.20233 0.83038 0.80368 0.85037 1.90671 1.67838 1.63545 1.18875 1.47843 1.28372 1.46099 1.09808 1.19800 0.96240 0.98759 0.75208 1.22246 1.30011 1.14577 0.99284 0.91955 1.25805 0.96321 1.02107 0.93658 1.70826 1.25137 1.17740 1.39252 0.83583 0.75853 0.74736 0.76668 1.20589 1.21196 1.20993 1.22414 0.90969 0.84279 1.06538 1.21547 0.75413 0.91504 0.74119 1.93220 1.71071 1.97002 1.54613 1.93145 1.52879 1.76577 1.94457 1.93184 1.81458 1.90893 1.50728 1.88597 1.71265 1.24622 1.40099 0.91851 0.88058 0.91974 0.88221 0.89720 0.84442 0.90002 0.94415 0.94907 0.91813 0.86397 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.46 10.57 -39.25 -0.41 -4.87 16 3 C 0.45 6.81 7.14 36.01 0.26 7.06 16 4 O -0.49 -9.13 16.27 -25.40 -0.41 -9.55 16 5 C 0.09 1.34 4.06 -27.16 -0.11 1.23 16 6 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 7 C -0.14 -1.84 6.54 -24.72 -0.16 -2.00 16 8 C -0.14 -2.27 5.72 -24.42 -0.14 -2.41 16 9 C 0.07 1.33 3.02 -26.85 -0.08 1.25 16 10 H 0.10 1.91 6.62 -51.93 -0.34 1.57 16 11 C 0.53 10.66 6.75 -10.98 -0.07 10.59 16 12 O -0.53 -11.87 15.48 -13.54 -0.21 -12.08 16 13 N -0.59 -11.42 2.37 -175.06 -0.41 -11.84 16 14 C 0.22 4.64 3.91 -5.19 -0.02 4.62 16 15 C -0.62 -13.89 6.37 -34.44 -0.22 -14.11 16 16 H 0.06 1.38 7.78 -52.49 -0.41 0.97 16 17 C 0.03 0.66 5.46 -17.82 -0.10 0.57 16 18 N -0.90 -23.21 13.65 55.43 0.76 -22.45 16 19 Si 1.06 21.30 29.90 -169.99 -5.08 16.22 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.29 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 C 0.08 1.42 5.43 -4.04 -0.02 1.40 16 24 C 0.43 7.40 3.30 37.16 0.12 7.53 16 25 F -0.18 -3.41 16.34 2.25 0.04 -3.37 16 26 F -0.19 -2.97 17.32 2.25 0.04 -2.93 16 27 F -0.18 -3.33 15.95 2.25 0.04 -3.29 16 28 O -0.33 -6.21 9.84 -64.36 -0.63 -6.84 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 34 H 0.14 2.48 5.67 -51.93 -0.29 2.18 16 35 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 36 H 0.04 0.84 6.96 -51.93 -0.36 0.48 16 37 H 0.03 0.72 6.05 -51.93 -0.31 0.41 16 38 H 0.27 7.02 7.22 -40.82 -0.29 6.73 16 39 H 0.12 1.86 7.45 -51.93 -0.39 1.47 16 40 H 0.13 1.91 8.08 -51.93 -0.42 1.49 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -30.04 349.66 -5.07 -35.10 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.56 Total: 3.51 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 0.52 Total: 17.13 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.34 Total: -34.29 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.67 Total: -33.35 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.11 Total: -9.60 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.08 Total: 16.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.04 -5.07 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -280.420 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -310.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -315.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds