Wall clock time and date at job start Tue Mar 31 2020 22:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99807 * 2 1 4 4 O 1.20823 * 120.00395 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99904 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.89431 * 304.48451 * 5 3 2 7 7 C 1.54384 * 109.82969 * 65.41040 * 5 3 2 8 8 C 1.55415 * 102.30812 * 140.80215 * 7 5 3 9 9 C 1.54949 * 100.89168 * 325.98635 * 8 7 5 10 10 H 1.09000 * 110.31234 * 277.36139 * 9 8 7 11 11 C 1.50706 * 110.30784 * 155.28636 * 9 8 7 12 12 O 1.21273 * 120.00391 * 254.66233 * 11 9 8 13 13 N 1.34775 * 119.99355 * 74.66182 * 11 9 8 14 14 C 1.46497 * 120.00483 * 5.00274 * 13 11 9 15 15 C 1.50705 * 109.47210 * 269.99757 * 14 13 11 16 16 H 1.07995 * 119.99477 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00252 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47396 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47091 * 300.00388 * 19 17 15 22 22 H 1.48501 * 109.47254 * 60.00235 * 19 17 15 23 23 C 1.46504 * 119.99569 * 185.00317 * 13 11 9 24 24 C 1.52999 * 109.46848 * 268.44193 * 23 13 11 25 25 F 1.39901 * 109.47175 * 63.77479 * 24 23 13 26 26 F 1.39899 * 109.47173 * 183.77032 * 24 23 13 27 27 F 1.39903 * 109.47601 * 303.77106 * 24 23 13 28 28 O 1.43237 * 109.83241 * 183.54691 * 5 3 2 29 29 H 1.08996 * 109.46944 * 59.99824 * 1 2 3 30 30 H 1.09006 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47120 * 299.99982 * 1 2 3 32 32 H 1.08998 * 110.84832 * 259.06409 * 7 5 3 33 33 H 1.09004 * 110.85050 * 22.47864 * 7 5 3 34 34 H 1.09006 * 111.20880 * 208.06579 * 8 7 5 35 35 H 1.08997 * 111.08995 * 83.87048 * 8 7 5 36 36 H 1.08996 * 109.47316 * 149.99778 * 14 13 11 37 37 H 1.08995 * 109.47123 * 29.99753 * 14 13 11 38 38 H 0.97008 * 119.99641 * 359.97438 * 18 17 15 39 39 H 1.08993 * 109.47686 * 28.44213 * 23 13 11 40 40 H 1.08998 * 109.46923 * 148.44622 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9668 0.7149 0.8457 7 6 4.1215 0.6985 -1.3197 8 6 5.2917 1.6701 -1.6391 9 6 4.7226 3.0037 -1.0927 10 1 4.0636 3.4638 -1.8290 11 6 5.8448 3.9442 -0.7360 12 8 6.1288 4.1359 0.4274 13 7 6.5328 4.5722 -1.7099 14 6 6.1209 4.4270 -3.1083 15 6 6.8270 3.2443 -3.7198 16 1 7.5135 2.6592 -3.1260 17 6 6.5957 2.9087 -5.0369 18 7 5.7592 3.6210 -5.7598 19 14 7.4703 1.4424 -5.7946 20 1 7.0529 1.2953 -7.2121 21 1 8.9387 1.6548 -5.7310 22 1 7.1152 0.2117 -5.0433 23 6 7.6928 5.4001 -1.3702 24 6 7.2418 6.8464 -1.1560 25 9 6.3783 6.9077 -0.0570 26 9 8.3596 7.6528 -0.9163 27 9 6.5751 7.3012 -2.2988 28 8 3.9812 2.6433 0.0838 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.4885 -0.3176 -1.1754 33 1 3.3654 0.7282 -2.1043 34 1 5.4722 1.7306 -2.7125 35 1 6.1976 1.3817 -1.1060 36 1 6.3814 5.3305 -3.6595 37 1 5.0432 4.2708 -3.1552 38 1 5.3047 4.3823 -5.3662 39 1 8.1527 5.0239 -0.4565 40 1 8.4170 5.3621 -2.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:07 Heat of formation + Delta-G solvation = -332.343913 kcal Electronic energy + Delta-G solvation = -31492.009336 eV Core-core repulsion = 26470.705451 eV Total energy + Delta-G solvation = -5021.303885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.16478 -48.68616 -48.65714 -42.09906 -41.21988 -39.59773 -37.51316 -37.23795 -34.88407 -33.40673 -32.33801 -30.57622 -28.76119 -28.31811 -25.87919 -25.09432 -24.20492 -23.09748 -22.00816 -20.79577 -19.69250 -19.57815 -19.31559 -19.22390 -18.56218 -18.08770 -17.84824 -17.64195 -17.44180 -16.66604 -16.43725 -15.68050 -15.58438 -15.53284 -15.38666 -15.29915 -15.10013 -14.87977 -14.81750 -14.81285 -14.38339 -14.32582 -14.16900 -13.81844 -13.48766 -13.36385 -13.33692 -13.06772 -12.88762 -12.80384 -12.66510 -12.41446 -12.01283 -11.88864 -11.87325 -11.76812 -11.27092 -11.15398 -10.69967 -10.44815 -9.81181 -8.57218 -6.34706 0.98590 1.16859 1.32910 1.64279 1.68738 1.70312 1.85373 1.88724 2.61834 2.68545 2.79059 2.96600 3.16516 3.22115 3.25728 3.49954 3.67720 3.74102 3.88472 4.03173 4.08568 4.23171 4.25225 4.28649 4.29764 4.48159 4.57207 4.67691 4.82575 4.87599 5.04796 5.18539 5.20820 5.26837 5.57221 5.81196 6.02460 6.33212 6.54711 6.60975 6.93130 7.42128 8.78693 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.004917 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.073403 B = 5693.129239 C = 8022.801071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.084 3.916 6 H 0.154 0.846 7 C -0.127 4.127 8 C -0.134 4.134 9 C 0.070 3.930 10 H 0.083 0.917 11 C 0.523 3.477 12 O -0.555 6.555 13 N -0.589 5.589 14 C 0.231 3.769 15 C -0.607 4.607 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 1.103 2.897 20 H -0.296 1.296 21 H -0.275 1.275 22 H -0.258 1.258 23 C 0.082 3.918 24 C 0.434 3.566 25 F -0.190 7.190 26 F -0.177 7.177 27 F -0.190 7.190 28 O -0.356 6.356 29 H 0.057 0.943 30 H 0.141 0.859 31 H 0.060 0.940 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.021 0.979 38 H 0.259 0.741 39 H 0.132 0.868 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -8.272 7.531 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.295 3.705 4 O -0.423 6.423 5 C 0.025 3.975 6 H 0.171 0.829 7 C -0.164 4.164 8 C -0.171 4.171 9 C 0.009 3.991 10 H 0.100 0.900 11 C 0.311 3.689 12 O -0.433 6.433 13 N -0.321 5.321 14 C 0.110 3.890 15 C -0.645 4.645 16 H 0.087 0.913 17 C -0.213 4.213 18 N -0.566 5.566 19 Si 0.926 3.074 20 H -0.222 1.222 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.044 4.044 24 C 0.378 3.622 25 F -0.172 7.172 26 F -0.159 7.159 27 F -0.171 7.171 28 O -0.274 6.274 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.377 -8.584 6.932 11.119 hybrid contribution -0.828 2.034 1.114 2.462 sum -2.205 -6.550 8.046 10.607 Atomic orbital electron populations 1.23609 0.74602 1.06078 1.02368 1.86484 1.25042 1.31527 1.83570 1.24500 0.92757 0.81687 0.71594 1.90670 1.67681 1.37917 1.45991 1.22640 0.86145 0.84513 1.04172 0.82911 1.23168 0.97476 1.02286 0.93514 1.23452 0.98574 0.89453 1.05625 1.22799 0.91636 0.97616 0.87006 0.89959 1.20555 0.83240 0.80340 0.84744 1.90648 1.68676 1.64407 1.19583 1.47806 1.29036 1.46304 1.08943 1.19537 0.95523 0.97951 0.75959 1.22362 1.28988 1.14165 0.98949 0.91346 1.26930 0.96200 1.03587 0.94605 1.70939 1.27177 1.18560 1.39921 0.83087 0.75487 0.73427 0.75406 1.22230 1.20049 1.18225 1.22643 0.90318 0.83509 1.07913 1.21555 0.75329 0.91886 0.73452 1.93198 1.71649 1.97082 1.55268 1.93167 1.52065 1.76289 1.94336 1.93171 1.81758 1.91032 1.51178 1.88561 1.71523 1.27290 1.40055 0.92381 0.84124 0.92082 0.84172 0.89939 0.86289 0.89101 0.95644 0.96109 0.93155 0.85015 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.93 10.57 -51.39 -0.54 -8.47 16 3 C 0.45 13.26 7.14 71.24 0.51 13.77 16 4 O -0.53 -20.12 16.27 28.33 0.46 -19.66 16 5 C 0.08 2.30 4.06 30.32 0.12 2.43 16 6 H 0.15 3.17 8.14 -2.39 -0.02 3.15 16 7 C -0.13 -2.99 6.54 31.89 0.21 -2.79 16 8 C -0.13 -4.09 5.72 32.09 0.18 -3.91 16 9 C 0.07 2.60 3.02 30.52 0.09 2.69 16 10 H 0.08 3.31 6.62 -2.39 -0.02 3.29 16 11 C 0.52 21.15 6.75 87.66 0.59 21.74 16 12 O -0.55 -24.58 15.48 15.26 0.24 -24.34 16 13 N -0.59 -22.70 2.37 -826.17 -1.95 -24.66 16 14 C 0.23 9.83 3.91 85.64 0.34 10.17 16 15 C -0.61 -26.55 6.37 25.60 0.16 -26.39 16 16 H 0.07 2.90 7.78 -2.91 -0.02 2.88 16 17 C -0.01 -0.59 5.46 84.65 0.46 -0.12 16 18 N -0.93 -48.76 13.65 21.45 0.29 -48.47 16 19 Si 1.10 41.45 29.90 68.60 2.05 43.51 16 20 H -0.30 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 23 C 0.08 2.67 5.43 86.38 0.47 3.14 16 24 C 0.43 14.70 3.30 71.98 0.24 14.93 16 25 F -0.19 -7.31 16.34 44.97 0.73 -6.57 16 26 F -0.18 -5.36 17.32 44.97 0.78 -4.58 16 27 F -0.19 -7.00 15.95 44.97 0.72 -6.28 16 28 O -0.36 -13.39 9.84 -121.12 -1.19 -14.58 16 29 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 1.99 7.84 -2.39 -0.02 1.98 16 34 H 0.12 4.14 5.67 -2.38 -0.01 4.13 16 35 H 0.09 2.61 8.05 -2.39 -0.02 2.59 16 36 H 0.03 1.16 6.96 -2.39 -0.02 1.14 16 37 H 0.02 0.95 6.05 -2.39 -0.01 0.94 16 38 H 0.26 13.80 7.22 -92.70 -0.67 13.13 16 39 H 0.13 3.96 7.45 -2.39 -0.02 3.95 16 40 H 0.14 4.14 8.08 -2.39 -0.02 4.12 16 Total: -1.00 -65.46 349.66 7.35 -58.11 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.20 Total: 18.69 kcal Atomic # 6 Polarization: 32.73 SS G_CDS: 4.57 Total: 37.30 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.66 Total: -73.13 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -1.04 Total: -67.05 kcal Atomic # 9 Polarization: -19.67 SS G_CDS: 2.23 Total: -17.43 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.05 Total: 43.51 kcal Total: -65.46 7.35 -58.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -274.235 kcal (2) G-P(sol) polarization free energy of solvation -65.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -339.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -332.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds