Wall clock time and date at job start Tue Mar 31 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99875 * 2 1 4 4 O 1.20827 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99902 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.82847 * 55.87964 * 5 3 2 7 7 C 1.54390 * 109.82791 * 294.99401 * 5 3 2 8 8 C 1.55307 * 102.25604 * 219.04105 * 7 5 3 9 9 C 1.54947 * 100.93763 * 34.13347 * 8 7 5 10 10 H 1.09004 * 110.30738 * 82.57141 * 9 8 7 11 11 C 1.50697 * 110.30637 * 204.63839 * 9 8 7 12 12 O 1.21285 * 120.00017 * 102.00607 * 11 9 8 13 13 N 1.34773 * 120.00451 * 282.00355 * 11 9 8 14 14 C 1.46503 * 119.99650 * 4.69926 * 13 11 9 15 15 C 1.50699 * 109.47296 * 275.10923 * 14 13 11 16 16 H 1.07999 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00363 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99673 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00460 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47166 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.47319 * 59.99654 * 19 17 15 22 22 H 1.48499 * 109.47405 * 299.99815 * 19 17 15 23 23 C 1.46498 * 120.00197 * 184.70277 * 13 11 9 24 24 C 1.52996 * 109.47159 * 267.85097 * 23 13 11 25 25 F 1.39900 * 109.47015 * 60.00252 * 24 23 13 26 26 F 1.39905 * 109.47307 * 179.97438 * 24 23 13 27 27 F 1.39899 * 109.47428 * 300.00066 * 24 23 13 28 28 O 1.43240 * 109.90617 * 176.82254 * 5 3 2 29 29 H 1.09000 * 109.47164 * 60.00033 * 1 2 3 30 30 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47345 * 300.00162 * 1 2 3 32 32 H 1.08997 * 110.84438 * 100.84900 * 7 5 3 33 33 H 1.08998 * 111.02043 * 337.31467 * 7 5 3 34 34 H 1.08996 * 111.12054 * 276.21850 * 8 7 5 35 35 H 1.08993 * 111.12525 * 152.05332 * 8 7 5 36 36 H 1.09003 * 109.46750 * 155.10893 * 14 13 11 37 37 H 1.09000 * 109.47125 * 35.11235 * 14 13 11 38 38 H 0.96996 * 120.00000 * 359.97438 * 18 17 15 39 39 H 1.09004 * 109.47196 * 27.85600 * 23 13 11 40 40 H 1.09006 * 109.46894 * 147.85327 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9653 0.7201 -0.8497 7 6 4.1219 0.6892 1.3154 8 6 5.2937 1.6561 1.6378 9 6 4.7259 2.9949 1.1029 10 1 4.0693 3.4504 1.8442 11 6 5.8490 3.9362 0.7515 12 8 6.1708 4.0903 -0.4077 13 7 6.4959 4.6068 1.7252 14 6 6.1777 4.3445 3.1310 15 6 4.9910 5.1777 3.5415 16 1 4.5210 5.8371 2.8268 17 6 4.5058 5.0991 4.8297 18 7 5.0785 4.2965 5.7001 19 14 3.0345 6.1313 5.3383 20 1 2.7121 5.8655 6.7632 21 1 1.8659 5.7781 4.4927 22 1 3.3552 7.5707 5.1631 23 6 7.5171 5.5982 1.3780 24 6 8.8909 4.9256 1.3463 25 9 8.8882 3.9043 0.3902 26 9 9.8661 5.8721 1.0141 27 9 9.1747 4.3851 2.6051 28 8 3.9829 2.6433 -0.0751 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.4874 -0.3264 1.1641 33 1 3.3694 0.7154 2.1035 34 1 6.1979 1.3703 1.1004 35 1 5.4765 1.7078 2.7110 36 1 7.0355 4.6031 3.7520 37 1 5.9417 3.2881 3.2591 38 1 5.8418 3.7597 5.4358 39 1 7.2960 6.0193 0.3972 40 1 7.5192 6.3939 2.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188006821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:10 Heat of formation + Delta-G solvation = -315.298934 kcal Electronic energy + Delta-G solvation = -31494.354293 eV Core-core repulsion = 26473.789534 eV Total energy + Delta-G solvation = -5020.564759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.78165 -47.33537 -47.22791 -40.86051 -39.83434 -38.25968 -36.34216 -35.55938 -33.08021 -32.29596 -31.02322 -29.23511 -27.65102 -26.69165 -24.65228 -23.31243 -22.87430 -21.96861 -20.86061 -19.34913 -18.33402 -18.22188 -17.98605 -17.61439 -17.20607 -16.93302 -16.52772 -16.29962 -15.99871 -15.31657 -14.84362 -14.54739 -14.16491 -14.12936 -13.98868 -13.87001 -13.72224 -13.44009 -13.42566 -13.34399 -13.25246 -13.07150 -12.81098 -12.37176 -12.34128 -12.01920 -11.96027 -11.78826 -11.67680 -11.54768 -11.16840 -11.00563 -10.87208 -10.71659 -10.51282 -10.23620 -9.80173 -9.51099 -9.15352 -8.64522 -8.12474 -6.65585 -4.43610 2.16565 2.38109 2.75351 2.98739 3.32076 3.32764 3.34713 3.51906 3.97497 4.14278 4.28816 4.33921 4.34717 4.53724 4.64458 4.74613 4.94186 4.99317 5.03161 5.06901 5.08230 5.26380 5.31942 5.39650 5.47723 5.59413 5.64495 5.80616 5.84737 6.13121 6.19834 6.27258 6.60336 6.77854 6.99398 7.64388 7.70940 7.74861 8.17162 8.49275 8.55086 9.27154 10.70962 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.004871 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.177708 B = 5747.504215 C = 7921.241289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.445 3.555 4 O -0.484 6.484 5 C 0.094 3.906 6 H 0.122 0.878 7 C -0.137 4.137 8 C -0.144 4.144 9 C 0.065 3.935 10 H 0.125 0.875 11 C 0.528 3.472 12 O -0.534 6.534 13 N -0.590 5.590 14 C 0.218 3.782 15 C -0.626 4.626 16 H 0.059 0.941 17 C 0.030 3.970 18 N -0.898 5.898 19 Si 1.065 2.935 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.083 3.917 24 C 0.431 3.569 25 F -0.179 7.179 26 F -0.188 7.188 27 F -0.181 7.181 28 O -0.325 6.325 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.269 0.731 39 H 0.119 0.881 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -7.780 -7.035 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.286 3.714 4 O -0.368 6.368 5 C 0.034 3.966 6 H 0.139 0.861 7 C -0.174 4.174 8 C -0.181 4.181 9 C 0.005 3.995 10 H 0.143 0.857 11 C 0.316 3.684 12 O -0.410 6.410 13 N -0.322 5.322 14 C 0.098 3.902 15 C -0.665 4.665 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.533 5.533 19 Si 0.892 3.108 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.044 4.044 24 C 0.375 3.625 25 F -0.160 7.160 26 F -0.170 7.170 27 F -0.163 7.163 28 O -0.243 6.243 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.588 -6.928 -6.528 9.651 hybrid contribution 1.034 -0.383 -1.038 1.515 sum -0.554 -7.311 -7.567 10.536 Atomic orbital electron populations 1.23262 0.76363 1.03543 1.02707 1.86481 1.23396 1.33343 1.84494 1.24274 0.92379 0.81655 0.73089 1.90706 1.66612 1.36275 1.43235 1.22215 0.86589 0.86081 1.01708 0.86078 1.23058 0.98412 1.00673 0.95279 1.23328 0.98416 0.92275 1.04125 1.23054 0.93044 0.95469 0.87898 0.85733 1.20224 0.82431 0.80829 0.84950 1.90666 1.65994 1.65065 1.19303 1.47834 1.36282 1.38606 1.09475 1.19870 0.97662 0.97697 0.74944 1.22295 1.15920 1.28417 0.99825 0.92224 1.25801 1.01882 0.97511 0.92457 1.70854 1.21834 1.23730 1.36871 0.83569 0.75053 0.75637 0.76504 1.20539 1.21056 1.21145 1.22434 0.82578 0.92400 1.06956 1.21530 0.89530 0.77794 0.73606 1.93200 1.96894 1.61412 1.64508 1.93150 1.66422 1.64865 1.92547 1.93184 1.94740 1.86928 1.41435 1.88597 1.71109 1.24448 1.40105 0.91947 0.88085 0.91774 0.88104 0.89335 0.89634 0.87515 0.94368 0.94595 0.92051 0.86285 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.44 10.56 -39.26 -0.41 -4.85 16 3 C 0.45 6.79 7.15 36.01 0.26 7.05 16 4 O -0.48 -9.21 16.28 -25.40 -0.41 -9.62 16 5 C 0.09 1.35 4.05 -27.15 -0.11 1.24 16 6 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 7 C -0.14 -1.67 6.53 -24.78 -0.16 -1.83 16 8 C -0.14 -2.13 5.98 -24.48 -0.15 -2.27 16 9 C 0.07 1.23 2.97 -26.86 -0.08 1.15 16 10 H 0.13 2.60 6.78 -51.93 -0.35 2.25 16 11 C 0.53 10.78 6.64 -10.99 -0.07 10.71 16 12 O -0.53 -11.89 15.56 -13.37 -0.21 -12.10 16 13 N -0.59 -11.58 2.39 -175.06 -0.42 -12.00 16 14 C 0.22 4.66 3.91 -5.19 -0.02 4.64 16 15 C -0.63 -15.25 8.26 -34.44 -0.28 -15.53 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.03 0.75 5.46 -17.82 -0.10 0.66 16 18 N -0.90 -23.91 13.65 55.43 0.76 -23.16 16 19 Si 1.07 23.20 29.90 -169.99 -5.08 18.11 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.08 1.41 5.40 -4.04 -0.02 1.39 16 24 C 0.43 7.15 3.29 37.16 0.12 7.28 16 25 F -0.18 -3.22 16.30 2.25 0.04 -3.18 16 26 F -0.19 -2.89 17.32 2.25 0.04 -2.85 16 27 F -0.18 -3.16 16.11 2.25 0.04 -3.12 16 28 O -0.33 -6.17 9.86 -64.28 -0.63 -6.80 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.09 7.85 -51.93 -0.41 0.69 16 34 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.11 1.60 6.30 -51.93 -0.33 1.27 16 36 H 0.04 0.85 7.04 -51.93 -0.37 0.49 16 37 H 0.04 0.76 4.75 -51.93 -0.25 0.51 16 38 H 0.27 6.99 7.22 -40.82 -0.29 6.70 16 39 H 0.12 1.93 7.43 -51.93 -0.39 1.55 16 40 H 0.12 1.94 8.09 -51.93 -0.42 1.52 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -31.46 351.45 -5.09 -36.55 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.54 Total: 1.85 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 0.45 Total: 15.88 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.34 Total: -35.16 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.67 Total: -33.37 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 0.11 Total: -9.15 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.08 Total: 18.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.46 -5.09 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -278.747 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -310.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -315.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds