Wall clock time and date at job start Tue Mar 31 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99875 * 2 1 4 4 O 1.20827 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99902 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.82847 * 55.87964 * 5 3 2 7 7 C 1.54390 * 109.82791 * 294.99401 * 5 3 2 8 8 C 1.55307 * 102.25604 * 219.04105 * 7 5 3 9 9 C 1.54947 * 100.93763 * 34.13347 * 8 7 5 10 10 H 1.09004 * 110.30738 * 82.57141 * 9 8 7 11 11 C 1.50697 * 110.30637 * 204.63839 * 9 8 7 12 12 O 1.21285 * 120.00017 * 102.00607 * 11 9 8 13 13 N 1.34773 * 120.00451 * 282.00355 * 11 9 8 14 14 C 1.46503 * 119.99650 * 4.69926 * 13 11 9 15 15 C 1.50699 * 109.47296 * 275.10923 * 14 13 11 16 16 H 1.07999 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00363 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99673 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00460 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47166 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.47319 * 59.99654 * 19 17 15 22 22 H 1.48499 * 109.47405 * 299.99815 * 19 17 15 23 23 C 1.46498 * 120.00197 * 184.70277 * 13 11 9 24 24 C 1.52996 * 109.47159 * 267.85097 * 23 13 11 25 25 F 1.39900 * 109.47015 * 60.00252 * 24 23 13 26 26 F 1.39905 * 109.47307 * 179.97438 * 24 23 13 27 27 F 1.39899 * 109.47428 * 300.00066 * 24 23 13 28 28 O 1.43240 * 109.90617 * 176.82254 * 5 3 2 29 29 H 1.09000 * 109.47164 * 60.00033 * 1 2 3 30 30 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47345 * 300.00162 * 1 2 3 32 32 H 1.08997 * 110.84438 * 100.84900 * 7 5 3 33 33 H 1.08998 * 111.02043 * 337.31467 * 7 5 3 34 34 H 1.08996 * 111.12054 * 276.21850 * 8 7 5 35 35 H 1.08993 * 111.12525 * 152.05332 * 8 7 5 36 36 H 1.09003 * 109.46750 * 155.10893 * 14 13 11 37 37 H 1.09000 * 109.47125 * 35.11235 * 14 13 11 38 38 H 0.96996 * 120.00000 * 359.97438 * 18 17 15 39 39 H 1.09004 * 109.47196 * 27.85600 * 23 13 11 40 40 H 1.09006 * 109.46894 * 147.85327 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9653 0.7201 -0.8497 7 6 4.1219 0.6892 1.3154 8 6 5.2937 1.6561 1.6378 9 6 4.7259 2.9949 1.1029 10 1 4.0693 3.4504 1.8442 11 6 5.8490 3.9362 0.7515 12 8 6.1708 4.0903 -0.4077 13 7 6.4959 4.6068 1.7252 14 6 6.1777 4.3445 3.1310 15 6 4.9910 5.1777 3.5415 16 1 4.5210 5.8371 2.8268 17 6 4.5058 5.0991 4.8297 18 7 5.0785 4.2965 5.7001 19 14 3.0345 6.1313 5.3383 20 1 2.7121 5.8655 6.7632 21 1 1.8659 5.7781 4.4927 22 1 3.3552 7.5707 5.1631 23 6 7.5171 5.5982 1.3780 24 6 8.8909 4.9256 1.3463 25 9 8.8882 3.9043 0.3902 26 9 9.8661 5.8721 1.0141 27 9 9.1747 4.3851 2.6051 28 8 3.9829 2.6433 -0.0751 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.4874 -0.3264 1.1641 33 1 3.3694 0.7154 2.1035 34 1 6.1979 1.3703 1.1004 35 1 5.4765 1.7078 2.7110 36 1 7.0355 4.6031 3.7520 37 1 5.9417 3.2881 3.2591 38 1 5.8418 3.7597 5.4358 39 1 7.2960 6.0193 0.3972 40 1 7.5192 6.3939 2.1230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:10 Heat of formation + Delta-G solvation = -333.426021 kcal Electronic energy + Delta-G solvation = -31495.140342 eV Core-core repulsion = 26473.789534 eV Total energy + Delta-G solvation = -5021.350809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.14344 -48.66598 -48.62428 -42.11122 -41.22086 -39.61735 -37.51034 -37.23501 -34.92777 -33.52567 -32.35821 -30.60904 -28.74247 -28.30551 -25.95629 -25.09533 -24.20449 -23.19600 -22.01018 -20.85176 -19.72568 -19.59145 -19.34715 -19.18303 -18.58703 -18.09622 -17.86582 -17.72348 -17.36078 -16.66302 -16.15523 -16.09049 -15.66572 -15.55199 -15.47356 -15.09702 -15.06829 -14.82318 -14.79714 -14.70544 -14.52559 -14.42743 -14.29351 -13.86197 -13.55091 -13.35195 -13.29243 -13.14337 -12.98532 -12.85589 -12.74855 -12.53363 -12.06665 -11.96596 -11.86742 -11.80150 -11.31467 -11.17070 -10.66337 -10.56431 -9.83301 -8.64735 -6.42765 0.99346 1.16357 1.30415 1.56266 1.59506 1.64291 1.79675 1.89471 2.51956 2.69139 2.77561 2.96796 3.11211 3.14460 3.22261 3.41331 3.63574 3.72151 3.89555 4.00590 4.14397 4.15111 4.24706 4.29329 4.30159 4.44747 4.54764 4.64065 4.68113 4.78380 4.93142 4.96725 5.21279 5.26901 5.54120 5.76157 5.98704 6.27751 6.53107 6.61952 6.92860 7.32186 8.72584 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.004871 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.177708 B = 5747.504215 C = 7921.241289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.450 3.550 4 O -0.532 6.532 5 C 0.084 3.916 6 H 0.155 0.845 7 C -0.123 4.123 8 C -0.137 4.137 9 C 0.063 3.937 10 H 0.096 0.904 11 C 0.525 3.475 12 O -0.556 6.556 13 N -0.591 5.591 14 C 0.229 3.771 15 C -0.625 4.625 16 H 0.046 0.954 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 1.100 2.900 20 H -0.281 1.281 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.077 3.923 24 C 0.440 3.560 25 F -0.186 7.186 26 F -0.178 7.178 27 F -0.185 7.185 28 O -0.355 6.355 29 H 0.060 0.940 30 H 0.141 0.859 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -9.132 -7.298 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.293 3.707 4 O -0.421 6.421 5 C 0.025 3.975 6 H 0.172 0.828 7 C -0.160 4.160 8 C -0.175 4.175 9 C 0.003 3.997 10 H 0.114 0.886 11 C 0.313 3.687 12 O -0.434 6.434 13 N -0.323 5.323 14 C 0.108 3.892 15 C -0.663 4.663 16 H 0.064 0.936 17 C -0.210 4.210 18 N -0.557 5.557 19 Si 0.924 3.076 20 H -0.207 1.207 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.049 4.049 24 C 0.384 3.616 25 F -0.168 7.168 26 F -0.159 7.159 27 F -0.167 7.167 28 O -0.273 6.273 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.579 -8.299 -6.798 10.844 hybrid contribution 1.005 0.006 -1.027 1.437 sum -0.573 -8.293 -7.826 11.417 Atomic orbital electron populations 1.23606 0.74630 1.06069 1.02360 1.86475 1.25012 1.31492 1.83633 1.24508 0.92791 0.81711 0.71724 1.90689 1.67658 1.37957 1.45767 1.22645 0.86210 0.84487 1.04186 0.82789 1.23100 0.97021 1.02032 0.93842 1.23309 0.99752 0.90702 1.03711 1.22927 0.92127 0.97033 0.87610 0.88606 1.20565 0.82647 0.80808 0.84666 1.90640 1.66882 1.65875 1.19989 1.47793 1.36827 1.38977 1.08662 1.19627 0.96297 0.97515 0.75721 1.22454 1.16462 1.28052 0.99367 0.93598 1.26749 1.03412 0.97924 0.92878 1.70931 1.22501 1.24929 1.37372 0.83097 0.73116 0.75338 0.76086 1.20654 1.20778 1.19799 1.22630 0.82189 0.92196 1.07840 1.21309 0.89444 0.77586 0.73255 1.93188 1.96933 1.61836 1.64806 1.93171 1.65941 1.64392 1.92435 1.93178 1.94760 1.87029 1.41731 1.88557 1.71410 1.27300 1.40034 0.92100 0.84066 0.92459 0.83702 0.89667 0.88481 0.87895 0.94874 0.93984 0.92555 0.85559 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -7.91 10.56 -51.42 -0.54 -8.46 16 3 C 0.45 13.32 7.15 71.24 0.51 13.83 16 4 O -0.53 -20.54 16.28 28.31 0.46 -20.08 16 5 C 0.08 2.26 4.05 30.32 0.12 2.39 16 6 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 7 C -0.12 -2.69 6.53 31.86 0.21 -2.48 16 8 C -0.14 -3.87 5.98 32.05 0.19 -3.68 16 9 C 0.06 2.38 2.97 30.51 0.09 2.47 16 10 H 0.10 4.13 6.78 -2.39 -0.02 4.12 16 11 C 0.52 21.44 6.64 87.66 0.58 22.02 16 12 O -0.56 -24.72 15.56 15.05 0.23 -24.48 16 13 N -0.59 -23.10 2.39 -826.15 -1.97 -25.07 16 14 C 0.23 9.79 3.91 85.63 0.33 10.13 16 15 C -0.62 -30.57 8.26 25.60 0.21 -30.36 16 16 H 0.05 2.34 7.81 -2.91 -0.02 2.32 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 18 N -0.92 -49.01 13.65 21.45 0.29 -48.71 16 19 Si 1.10 46.62 29.90 68.60 2.05 48.67 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 C 0.08 2.56 5.40 86.38 0.47 3.03 16 24 C 0.44 14.12 3.29 71.98 0.24 14.36 16 25 F -0.19 -6.52 16.30 44.97 0.73 -5.79 16 26 F -0.18 -5.20 17.32 44.97 0.78 -4.42 16 27 F -0.19 -6.27 16.11 44.97 0.72 -5.54 16 28 O -0.35 -13.45 9.86 -121.20 -1.19 -14.65 16 29 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.94 7.85 -2.39 -0.02 1.93 16 34 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 35 H 0.10 2.99 6.30 -2.39 -0.02 2.97 16 36 H 0.03 1.47 7.04 -2.39 -0.02 1.45 16 37 H 0.04 1.78 4.75 -2.39 -0.01 1.76 16 38 H 0.26 13.80 7.22 -92.71 -0.67 13.13 16 39 H 0.13 4.02 7.43 -2.38 -0.02 4.01 16 40 H 0.14 4.18 8.09 -2.38 -0.02 4.16 16 Total: -1.00 -68.21 351.45 7.38 -60.83 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.20 Total: 14.29 kcal Atomic # 6 Polarization: 28.80 SS G_CDS: 4.61 Total: 33.42 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.68 Total: -73.79 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -1.04 Total: -67.67 kcal Atomic # 9 Polarization: -17.99 SS G_CDS: 2.24 Total: -15.75 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.05 Total: 48.67 kcal Total: -68.21 7.38 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.597 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -340.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -333.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds