Wall clock time and date at job start Tue Mar 31 2020 22:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 N 1.46495 * 109.47166 * 180.02562 * 15 13 12 17 17 C 1.34774 * 120.00134 * 180.02562 * 16 15 13 18 18 O 1.21509 * 120.00153 * 359.97438 * 17 16 15 19 19 O 1.34634 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.45201 * 117.00247 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47535 * 179.97438 * 20 19 17 22 22 F 1.39896 * 109.47006 * 60.00360 * 21 20 19 23 23 F 1.39907 * 109.47208 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47431 * 300.00109 * 21 20 19 25 25 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 29 29 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 30 30 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 31 31 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 32 32 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 33 33 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 34 34 H 0.97004 * 119.99829 * 359.97438 * 16 15 13 35 35 H 1.08998 * 109.47036 * 300.00222 * 20 19 17 36 36 H 1.09002 * 109.47148 * 59.99808 * 20 19 17 37 37 H 1.08996 * 109.60899 * 295.48089 * 25 12 11 38 38 H 1.09006 * 109.74993 * 175.05419 * 25 12 11 39 39 H 1.09002 * 109.60606 * 354.94337 * 26 9 7 40 40 H 1.08999 * 109.60696 * 115.28811 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 7 -0.0348 -8.1179 2.1908 17 6 0.1945 -9.3918 1.8152 18 8 1.0975 -9.6441 1.0423 19 8 -0.5769 -10.3848 2.2964 20 6 -0.2728 -11.7320 1.8483 21 6 -1.2471 -12.7174 2.4968 22 9 -2.5563 -12.3884 2.1298 23 9 -0.9544 -14.0154 2.0646 24 9 -1.1218 -12.6494 3.8886 25 6 0.5346 -3.2895 2.4448 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0134 -4.0701 -0.8241 29 1 2.7052 -3.5079 -0.8042 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 0.7253 -7.0098 0.5809 33 1 1.8425 -7.2132 1.9516 34 1 -0.7555 -7.9165 2.8081 35 1 -0.3700 -11.7849 0.7640 36 1 0.7472 -11.9886 2.1346 37 1 1.3249 -2.8690 3.0665 38 1 -0.3656 -3.4307 3.0431 39 1 0.0947 -1.3262 1.6610 40 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265776812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:48 Heat of formation + Delta-G solvation = -228.496229 kcal Electronic energy + Delta-G solvation = -29297.150489 eV Core-core repulsion = 24312.642529 eV Total energy + Delta-G solvation = -4984.507960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.61017 -48.16858 -48.05531 -41.02060 -39.86905 -37.44719 -36.89588 -34.90147 -34.08742 -31.32553 -31.09632 -30.53504 -28.26597 -26.66529 -24.09034 -23.71248 -22.93445 -21.94176 -20.76309 -19.88420 -19.14792 -18.88940 -18.69266 -18.27356 -17.19420 -17.09789 -16.62349 -16.12483 -15.92730 -15.63595 -14.99769 -14.97212 -14.85207 -14.53180 -14.51086 -14.25053 -14.22056 -14.15873 -13.85793 -13.76334 -13.62766 -13.38757 -13.10876 -12.96132 -12.36872 -12.33581 -11.86340 -11.46395 -11.32506 -11.13411 -10.91138 -10.83745 -10.66526 -10.36398 -10.07080 -9.98596 -9.68141 -9.64432 -8.69771 -8.43972 -6.81197 -5.92644 -3.38286 1.20233 2.20980 2.34811 2.62777 3.07066 3.17836 3.29706 3.37645 3.39122 3.43692 3.52085 4.02664 4.35044 4.41585 4.42033 4.47480 5.03484 5.07298 5.14772 5.25242 5.51304 5.58545 5.61750 5.75939 5.82449 6.00286 6.18760 6.24652 6.36184 6.56658 6.69510 7.00374 7.12424 7.43575 7.60700 7.66435 7.85464 8.19632 8.28170 9.03867 9.66461 10.22382 11.15026 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038381 B = 0.001868 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.346041 B =14983.992105 C =15240.039192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.083 3.917 12 N -0.587 5.587 13 C 0.503 3.497 14 O -0.551 6.551 15 C 0.119 3.881 16 N -0.688 5.688 17 C 0.659 3.341 18 O -0.566 6.566 19 O -0.356 6.356 20 C 0.043 3.957 21 C 0.465 3.535 22 F -0.172 7.172 23 F -0.170 7.170 24 F -0.173 7.173 25 C 0.087 3.913 26 C 0.157 3.843 27 H 0.256 0.744 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.421 0.579 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -22.684 4.515 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.002 3.998 11 C -0.042 4.042 12 N -0.318 5.318 13 C 0.290 3.710 14 O -0.431 6.431 15 C -0.007 4.007 16 N -0.350 5.350 17 C 0.411 3.589 18 O -0.455 6.455 19 O -0.270 6.270 20 C -0.034 4.034 21 C 0.411 3.589 22 F -0.154 7.154 23 F -0.151 7.151 24 F -0.154 7.154 25 C -0.036 4.036 26 C 0.031 3.969 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.260 0.740 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.467 -22.662 4.538 23.117 hybrid contribution 0.037 0.760 0.170 0.780 sum 0.504 -21.902 4.707 22.408 Atomic orbital electron populations 1.70013 1.05352 1.25888 1.53143 1.25104 0.95308 0.98670 1.00406 0.86269 0.79157 0.83351 0.77796 1.21298 1.21469 1.20378 1.19169 0.92749 0.84557 1.42417 0.91391 1.44026 1.36527 1.01656 1.49166 1.21371 0.98708 0.87375 0.92305 1.22608 0.88357 1.00660 0.92542 1.48015 1.32277 1.06707 1.44841 1.20192 0.83365 0.85423 0.82043 1.90675 1.28985 1.86465 1.36933 1.21162 0.95250 0.83877 1.00420 1.44248 1.37843 1.02259 1.50648 1.17694 0.80241 0.81474 0.79516 1.91052 1.33226 1.83167 1.38009 1.86179 1.57442 1.15187 1.68166 1.23916 0.99199 0.78321 1.02004 1.19991 0.80978 0.80718 0.77255 1.93252 1.38681 1.92223 1.91196 1.93243 1.93287 1.38927 1.89637 1.93249 1.95746 1.96203 1.30206 1.22595 1.00092 0.82257 0.98639 1.21212 0.89094 0.98649 0.87948 0.93365 0.95677 0.91162 0.90911 0.90695 0.87662 0.87865 0.73976 0.86159 0.86216 0.91754 0.89890 0.88063 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 11.20 55.49 0.62 -24.32 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.61 9.57 -15.06 -0.14 -6.76 16 8 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.59 2.96 -171.76 -0.51 -14.10 16 10 C 0.13 2.36 6.70 -3.37 -0.02 2.34 16 11 C 0.08 1.18 6.52 -3.37 -0.02 1.16 16 12 N -0.59 -9.40 2.95 -172.21 -0.51 -9.91 16 13 C 0.50 7.53 7.77 -10.98 -0.09 7.44 16 14 O -0.55 -9.69 15.08 5.56 0.08 -9.60 16 15 C 0.12 1.37 4.50 -5.20 -0.02 1.35 16 16 N -0.69 -7.91 5.53 -66.48 -0.37 -8.27 16 17 C 0.66 7.62 8.75 54.05 0.47 8.09 16 18 O -0.57 -7.53 16.13 -19.28 -0.31 -7.84 16 19 O -0.36 -3.54 10.17 -40.31 -0.41 -3.95 16 20 C 0.04 0.30 5.43 37.15 0.20 0.50 16 21 C 0.47 3.46 3.32 37.15 0.12 3.58 16 22 F -0.17 -1.53 17.26 2.25 0.04 -1.49 16 23 F -0.17 -1.19 17.32 2.25 0.04 -1.15 16 24 F -0.17 -1.51 17.27 2.25 0.04 -1.47 16 25 C 0.09 1.60 6.59 -3.59 -0.02 1.58 16 26 C 0.16 3.52 5.51 -3.59 -0.02 3.50 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.81 5.91 -51.93 -0.31 0.50 16 32 H 0.11 1.15 7.72 -51.93 -0.40 0.74 16 33 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 34 H 0.42 4.86 7.55 -40.82 -0.31 4.55 16 35 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 39 H 0.10 2.53 6.00 -51.93 -0.31 2.22 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -30.91 351.40 -5.24 -36.15 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.60 Total: 2.26 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 0.37 Total: 22.81 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.76 Total: -56.60 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.64 Total: -21.39 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.12 Total: -4.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.91 -5.24 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265776812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.342 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds