Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 N 1.46495 * 109.47166 * 180.02562 * 15 13 12 17 17 C 1.34774 * 120.00134 * 180.02562 * 16 15 13 18 18 O 1.21509 * 120.00153 * 359.97438 * 17 16 15 19 19 O 1.34634 * 119.99962 * 179.97438 * 17 16 15 20 20 C 1.45201 * 117.00247 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47535 * 179.97438 * 20 19 17 22 22 F 1.39896 * 109.47006 * 60.00360 * 21 20 19 23 23 F 1.39907 * 109.47208 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47431 * 300.00109 * 21 20 19 25 25 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 29 29 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 30 30 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 31 31 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 32 32 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 33 33 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 34 34 H 0.97004 * 119.99829 * 359.97438 * 16 15 13 35 35 H 1.08998 * 109.47036 * 300.00222 * 20 19 17 36 36 H 1.09002 * 109.47148 * 59.99808 * 20 19 17 37 37 H 1.08996 * 109.60899 * 295.48089 * 25 12 11 38 38 H 1.09006 * 109.74993 * 175.05419 * 25 12 11 39 39 H 1.09002 * 109.60606 * 354.94337 * 26 9 7 40 40 H 1.08999 * 109.60696 * 115.28811 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 7 -0.0348 -8.1179 2.1908 17 6 0.1945 -9.3918 1.8152 18 8 1.0975 -9.6441 1.0423 19 8 -0.5769 -10.3848 2.2964 20 6 -0.2728 -11.7320 1.8483 21 6 -1.2471 -12.7174 2.4968 22 9 -2.5563 -12.3884 2.1298 23 9 -0.9544 -14.0154 2.0646 24 9 -1.1218 -12.6494 3.8886 25 6 0.5346 -3.2895 2.4448 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0134 -4.0701 -0.8241 29 1 2.7052 -3.5079 -0.8042 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 0.7253 -7.0098 0.5809 33 1 1.8425 -7.2132 1.9516 34 1 -0.7555 -7.9165 2.8081 35 1 -0.3700 -11.7849 0.7640 36 1 0.7472 -11.9886 2.1346 37 1 1.3249 -2.8690 3.0665 38 1 -0.3656 -3.4307 3.0431 39 1 0.0947 -1.3262 1.6610 40 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265776812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -250.243616 kcal Electronic energy + Delta-G solvation = -29298.093527 eV Core-core repulsion = 24312.642529 eV Total energy + Delta-G solvation = -4985.450998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.22563 -48.76800 -48.70591 -41.90383 -41.06616 -38.66441 -37.98795 -35.85587 -35.69873 -33.09383 -32.27695 -31.48045 -29.47146 -28.15517 -25.45843 -24.72351 -24.30671 -22.87551 -22.13930 -20.84938 -20.06446 -19.76775 -19.45934 -19.05464 -18.57655 -17.90055 -17.80945 -17.32318 -17.06149 -16.72038 -16.63931 -15.74571 -15.64938 -15.54070 -15.46683 -15.27330 -15.14102 -15.04888 -14.94300 -14.85216 -14.85139 -14.66876 -14.22938 -14.15476 -13.52938 -13.37443 -13.12719 -12.98934 -12.63720 -12.46616 -12.30738 -12.17220 -12.04788 -11.99663 -11.86251 -11.67536 -10.99851 -10.60085 -10.52298 -9.88347 -8.65545 -7.88072 -5.36119 0.46181 1.41838 1.48833 1.51345 1.51666 1.56326 1.60073 1.96037 2.51765 2.53966 2.77831 2.86371 3.26788 3.27799 3.38432 3.61442 3.91266 3.94898 4.19661 4.22306 4.24425 4.28763 4.41037 4.54809 4.66971 4.71226 4.80361 4.86497 5.02487 5.08048 5.27043 5.44490 5.61374 5.67477 6.12140 6.36623 6.38717 6.95524 7.00639 7.10998 7.80788 8.32849 9.17182 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038381 B = 0.001868 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.346041 B =14983.992105 C =15240.039192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.260 4.260 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.122 3.878 11 C 0.094 3.906 12 N -0.593 5.593 13 C 0.506 3.494 14 O -0.579 6.579 15 C 0.127 3.873 16 N -0.690 5.690 17 C 0.665 3.335 18 O -0.583 6.583 19 O -0.362 6.362 20 C 0.039 3.961 21 C 0.470 3.530 22 F -0.182 7.182 23 F -0.166 7.166 24 F -0.181 7.181 25 C 0.104 3.896 26 C 0.168 3.832 27 H 0.250 0.750 28 H 0.018 0.982 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.420 0.580 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.069 0.931 40 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -24.563 4.465 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.003 4.003 11 C -0.029 4.029 12 N -0.325 5.325 13 C 0.294 3.706 14 O -0.460 6.460 15 C 0.001 3.999 16 N -0.352 5.352 17 C 0.417 3.583 18 O -0.472 6.472 19 O -0.276 6.276 20 C -0.037 4.037 21 C 0.415 3.585 22 F -0.163 7.163 23 F -0.147 7.147 24 F -0.162 7.162 25 C -0.020 4.020 26 C 0.041 3.959 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.259 0.741 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 2.390 -24.598 4.485 25.117 hybrid contribution -0.585 1.227 0.160 1.369 sum 1.805 -23.371 4.645 23.896 Atomic orbital electron populations 1.70172 1.06817 1.25965 1.55322 1.25839 0.95944 1.01716 1.01229 0.85287 0.78171 0.79558 0.77455 1.21345 1.22363 1.19172 1.19547 0.93191 0.85586 1.40649 0.90622 1.44287 1.36334 1.02880 1.49838 1.21604 0.98734 0.85960 0.94052 1.22597 0.87759 1.02002 0.90581 1.48028 1.32996 1.06086 1.45361 1.20737 0.82401 0.86166 0.81249 1.90669 1.30180 1.86991 1.38199 1.21173 0.96237 0.81655 1.00804 1.44254 1.37846 1.02443 1.50640 1.17614 0.80017 0.81541 0.79154 1.91041 1.33973 1.83459 1.38777 1.86159 1.57200 1.16078 1.68150 1.24180 0.99878 0.76716 1.02905 1.20031 0.80628 0.80980 0.76827 1.93234 1.39543 1.92329 1.91238 1.93252 1.93205 1.38698 1.89537 1.93234 1.95749 1.96264 1.31003 1.22138 1.00258 0.82925 0.96695 1.20908 0.88192 0.97882 0.88942 0.94110 0.96350 0.90045 0.89883 0.86160 0.86281 0.85338 0.74085 0.84575 0.84385 0.91190 0.90252 0.91309 0.98813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.68 11.20 21.65 0.24 -53.44 16 2 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 3 Si 0.97 42.83 29.59 68.60 2.03 44.86 16 4 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.26 -13.19 9.57 84.03 0.80 -12.38 16 8 H 0.08 3.66 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -27.99 2.96 -697.33 -2.06 -30.06 16 10 C 0.12 4.24 6.70 86.57 0.58 4.82 16 11 C 0.09 2.37 6.52 86.57 0.56 2.93 16 12 N -0.59 -17.82 2.95 -817.13 -2.41 -20.23 16 13 C 0.51 14.02 7.77 87.65 0.68 14.70 16 14 O -0.58 -19.72 15.08 -3.04 -0.05 -19.77 16 15 C 0.13 2.48 4.50 85.63 0.38 2.87 16 16 N -0.69 -14.14 5.53 -594.64 -3.29 -17.43 16 17 C 0.66 13.64 8.75 129.79 1.14 14.77 16 18 O -0.58 -13.68 16.13 19.81 0.32 -13.36 16 19 O -0.36 -6.45 10.17 -55.43 -0.56 -7.01 16 20 C 0.04 0.46 5.43 71.98 0.39 0.85 16 21 C 0.47 6.25 3.32 71.98 0.24 6.49 16 22 F -0.18 -3.03 17.26 44.97 0.78 -2.25 16 23 F -0.17 -2.05 17.32 44.97 0.78 -1.27 16 24 F -0.18 -2.93 17.27 44.97 0.78 -2.15 16 25 C 0.10 3.80 6.59 86.42 0.57 4.37 16 26 C 0.17 7.71 5.51 86.41 0.48 8.19 16 27 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 2.61 7.93 -2.39 -0.02 2.59 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.12 1.98 5.91 -2.38 -0.01 1.97 16 32 H 0.12 2.10 7.72 -2.39 -0.02 2.08 16 33 H 0.13 1.96 7.91 -2.39 -0.02 1.94 16 34 H 0.42 8.99 7.55 -92.71 -0.70 8.29 16 35 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.08 2.94 7.00 -2.38 -0.02 2.93 16 39 H 0.07 3.60 6.00 -2.39 -0.01 3.59 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -67.86 351.40 3.20 -64.66 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.41 Total: 12.19 kcal Atomic # 6 Polarization: 39.03 SS G_CDS: 6.24 Total: 45.27 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -7.52 Total: -121.16 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.29 Total: -40.14 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 2.33 Total: -5.68 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.86 3.20 -64.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265776812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.582 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds