Wall clock time and date at job start Tue Mar 31 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.34665 * 125.98806 * 269.71472 * 9 6 5 11 11 N 1.36883 * 106.81552 * 179.84761 * 10 9 6 12 12 C 1.46498 * 126.39798 * 180.19102 * 11 10 9 13 13 C 1.35043 * 107.20742 * 0.41277 * 11 10 9 14 14 C 1.50694 * 125.65593 * 179.72074 * 13 11 10 15 15 N 1.30505 * 108.69524 * 359.74150 * 13 11 10 16 16 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 17 17 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 18 18 C 1.46498 * 125.97191 * 359.96192 * 17 2 1 19 19 C 1.50707 * 109.47366 * 90.00120 * 18 17 2 20 20 H 1.08005 * 119.99361 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00150 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99629 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99876 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47550 * 89.99783 * 23 21 19 25 25 H 1.48500 * 109.46867 * 209.99789 * 23 21 19 26 26 H 1.48503 * 109.47341 * 329.99518 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 30 30 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 31 31 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 32 32 H 1.07998 * 126.59569 * 359.96550 * 10 9 6 33 33 H 1.09002 * 109.47033 * 270.26557 * 12 11 10 34 34 H 1.09000 * 109.47029 * 30.26349 * 12 11 10 35 35 H 1.09002 * 109.47359 * 150.26603 * 12 11 10 36 36 H 1.09002 * 109.47273 * 270.00445 * 14 13 11 37 37 H 1.09008 * 109.46980 * 29.99650 * 14 13 11 38 38 H 1.08993 * 109.47632 * 149.99983 * 14 13 11 39 39 H 1.09006 * 109.47531 * 210.00084 * 18 17 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 18 17 2 41 41 H 0.97006 * 119.99820 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.1504 -1.3486 -1.7564 11 7 6.4470 -1.6020 -3.0685 12 6 6.2648 -2.8747 -3.7708 13 6 6.9437 -0.4612 -3.5934 14 6 7.4105 -0.2784 -5.0144 15 7 6.9527 0.4568 -2.6658 16 7 3.6337 -0.6577 -0.0044 17 7 2.3016 -1.0909 -0.0060 18 6 1.8499 -2.4845 -0.0129 19 6 1.6942 -2.9551 -1.4361 20 1 1.9098 -2.2831 -2.2537 21 6 1.2766 -4.2435 -1.6944 22 7 1.1413 -4.6543 -2.9363 23 14 0.9031 -5.4054 -0.2803 24 1 -0.5278 -5.2821 0.0971 25 1 1.1860 -6.8018 -0.6990 26 1 1.7542 -5.0562 0.8855 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1212 0.0007 31 1 4.6741 2.4387 0.0105 32 1 5.7394 -2.0473 -1.0428 33 1 7.1677 -3.4772 -3.6713 34 1 5.4205 -3.4111 -3.3376 35 1 6.0705 -2.6828 -4.8261 36 1 8.4711 -0.5207 -5.0825 37 1 6.8441 -0.9391 -5.6708 38 1 7.2541 0.7567 -5.3181 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.8472 -5.5606 -3.1181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271066634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:06 Heat of formation + Delta-G solvation = 64.283543 kcal Electronic energy + Delta-G solvation = -28003.002793 eV Core-core repulsion = 24048.093078 eV Total energy + Delta-G solvation = -3954.909714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07105 -40.70015 -36.91626 -35.60684 -35.36168 -34.05410 -33.33193 -31.88176 -31.48663 -31.18571 -27.48148 -27.20547 -26.88197 -26.48916 -22.84877 -22.14030 -20.75196 -20.14019 -19.94346 -18.49952 -17.53096 -17.28553 -17.23031 -16.42181 -15.87143 -15.67280 -15.41320 -14.84524 -14.66815 -14.07965 -14.04381 -13.67068 -13.45078 -13.38712 -12.88324 -12.71454 -12.69514 -12.66606 -12.49861 -12.39169 -12.10645 -12.04785 -11.85594 -11.74252 -11.71951 -11.43336 -11.32664 -10.97737 -10.78481 -10.20922 -10.04777 -9.98633 -9.76988 -9.73336 -8.92655 -8.59504 -8.22759 -7.69651 -6.41442 -4.45047 0.60570 1.86920 2.52333 2.57665 2.77259 2.95893 3.05247 3.14088 3.15980 3.27653 3.55900 4.00762 4.09278 4.35632 4.62239 4.83818 4.85237 4.97517 5.03357 5.10953 5.19884 5.29565 5.39616 5.52234 5.60137 5.65016 5.72347 5.87372 6.01917 6.04274 6.15506 6.18450 6.35551 6.42850 6.45154 6.54980 6.98749 7.12322 7.14645 7.30969 7.69055 7.88480 8.15769 8.33591 8.62640 9.14332 10.70377 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.005080 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.485930 B = 5510.367939 C = 7182.693580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.112 3.888 3 C -0.305 4.305 4 C 0.293 3.707 5 N -1.013 6.013 6 S 2.733 3.267 7 O -0.951 6.951 8 O -0.934 6.934 9 C -0.568 4.568 10 C 0.111 3.889 11 N -0.450 5.450 12 C 0.063 3.937 13 C 0.197 3.803 14 C -0.065 4.065 15 N -0.417 5.417 16 N -0.320 5.320 17 N -0.313 5.313 18 C 0.229 3.771 19 C -0.541 4.541 20 H 0.080 0.920 21 C 0.081 3.919 22 N -0.886 5.886 23 Si 0.869 3.131 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.432 0.568 32 H 0.199 0.801 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 6.555 -0.556 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.020 4.020 3 C -0.338 4.338 4 C 0.037 3.963 5 N -0.766 5.766 6 S 2.820 3.180 7 O -0.940 6.940 8 O -0.924 6.924 9 C -0.779 4.779 10 C -0.032 4.032 11 N -0.130 5.130 12 C -0.079 4.079 13 C -0.069 4.069 14 C -0.124 4.124 15 N -0.135 5.135 16 N -0.150 5.150 17 N -0.094 5.094 18 C 0.110 3.890 19 C -0.580 4.580 20 H 0.098 0.902 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.695 3.305 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.268 0.732 32 H 0.216 0.784 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.809 5.757 -0.221 8.919 hybrid contribution -1.387 -0.777 -0.114 1.594 sum 5.422 4.980 -0.336 7.369 Atomic orbital electron populations 1.20449 0.87629 1.04351 1.02724 1.20911 0.94827 0.86838 0.99457 1.20599 0.89852 0.99020 1.24311 1.18537 0.87005 0.89715 1.01021 1.52661 1.20060 1.16383 1.87497 1.00933 0.71301 0.73057 0.72745 1.93574 1.59012 1.54247 1.87210 1.93629 1.85258 1.60776 1.52722 1.32884 1.21544 1.04938 1.18572 1.22881 0.97215 0.97392 0.85693 1.45575 1.45748 1.11883 1.09774 1.22266 1.04310 0.82797 0.98485 1.23557 1.02897 0.82444 0.98021 1.20185 1.01402 1.04489 0.86293 1.70201 1.16995 1.28971 0.97363 1.77278 0.99680 1.07838 1.30212 1.48469 1.00955 1.07042 1.52964 1.20055 0.95561 0.73667 0.99738 1.21151 1.47634 0.98915 0.90260 0.90157 1.24780 0.94376 0.97454 0.95746 1.69863 1.45591 1.18411 1.18442 0.86954 0.79670 0.81004 0.82906 1.19530 1.20504 1.18600 0.90786 0.89692 0.90272 0.84014 0.73164 0.78387 0.90136 0.87867 0.89054 0.90096 0.90610 0.89002 0.92875 0.93471 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.89 36.01 0.36 -0.97 16 2 C 0.11 2.03 6.92 -82.28 -0.57 1.46 16 3 C -0.30 -5.21 10.74 -39.82 -0.43 -5.64 16 4 C 0.29 5.52 7.72 -154.55 -1.19 4.33 16 5 N -1.01 -16.34 5.91 31.39 0.19 -16.16 16 6 S 2.73 49.12 5.65 -107.50 -0.61 48.51 16 7 O -0.95 -18.11 18.02 -57.17 -1.03 -19.14 16 8 O -0.93 -18.76 17.05 -57.17 -0.97 -19.74 16 9 C -0.57 -10.60 7.06 -17.82 -0.13 -10.72 16 10 C 0.11 2.00 10.77 -16.56 -0.18 1.82 16 11 N -0.45 -6.99 3.15 -121.28 -0.38 -7.38 16 12 C 0.06 0.74 10.97 59.85 0.66 1.40 16 13 C 0.20 3.06 7.90 -155.41 -1.23 1.83 16 14 C -0.07 -0.67 10.19 36.00 0.37 -0.30 16 15 N -0.42 -7.66 11.25 -10.03 -0.11 -7.77 16 16 N -0.32 -6.82 11.01 31.41 0.35 -6.47 16 17 N -0.31 -6.64 3.59 -58.32 -0.21 -6.85 16 18 C 0.23 5.06 4.88 -5.19 -0.03 5.03 16 19 C -0.54 -13.78 9.94 -34.44 -0.34 -14.12 16 20 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 21 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.89 -24.22 13.96 55.43 0.77 -23.45 16 23 Si 0.87 18.79 27.47 -169.99 -4.67 14.12 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.43 5.34 8.96 -34.47 -0.31 5.03 16 32 H 0.20 3.57 7.97 -52.49 -0.42 3.15 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 0.87 7.05 -51.93 -0.37 0.50 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.63 7.07 -51.92 -0.37 0.26 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 40 H 0.05 0.96 7.07 -51.92 -0.37 0.59 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -35.43 366.57 -9.12 -44.54 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.15 Total: 8.17 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.81 Total: -13.92 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: 0.60 Total: -68.07 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.01 Total: -38.88 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.67 Total: 14.12 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.61 Total: 48.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.43 -9.12 -44.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271066634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.825 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds