Wall clock time and date at job start Tue Mar 31 2020 22:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.34665 * 125.98806 * 269.71472 * 9 6 5 11 11 N 1.36883 * 106.81552 * 179.84761 * 10 9 6 12 12 C 1.46498 * 126.39798 * 180.19102 * 11 10 9 13 13 C 1.35043 * 107.20742 * 0.41277 * 11 10 9 14 14 C 1.50694 * 125.65593 * 179.72074 * 13 11 10 15 15 N 1.30505 * 108.69524 * 359.74150 * 13 11 10 16 16 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 17 17 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 18 18 C 1.46498 * 125.97191 * 359.96192 * 17 2 1 19 19 C 1.50707 * 109.47366 * 90.00120 * 18 17 2 20 20 H 1.08005 * 119.99361 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00150 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99629 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99876 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47550 * 89.99783 * 23 21 19 25 25 H 1.48500 * 109.46867 * 209.99789 * 23 21 19 26 26 H 1.48503 * 109.47341 * 329.99518 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 30 30 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 31 31 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 32 32 H 1.07998 * 126.59569 * 359.96550 * 10 9 6 33 33 H 1.09002 * 109.47033 * 270.26557 * 12 11 10 34 34 H 1.09000 * 109.47029 * 30.26349 * 12 11 10 35 35 H 1.09002 * 109.47359 * 150.26603 * 12 11 10 36 36 H 1.09002 * 109.47273 * 270.00445 * 14 13 11 37 37 H 1.09008 * 109.46980 * 29.99650 * 14 13 11 38 38 H 1.08993 * 109.47632 * 149.99983 * 14 13 11 39 39 H 1.09006 * 109.47531 * 210.00084 * 18 17 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 18 17 2 41 41 H 0.97006 * 119.99820 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.1504 -1.3486 -1.7564 11 7 6.4470 -1.6020 -3.0685 12 6 6.2648 -2.8747 -3.7708 13 6 6.9437 -0.4612 -3.5934 14 6 7.4105 -0.2784 -5.0144 15 7 6.9527 0.4568 -2.6658 16 7 3.6337 -0.6577 -0.0044 17 7 2.3016 -1.0909 -0.0060 18 6 1.8499 -2.4845 -0.0129 19 6 1.6942 -2.9551 -1.4361 20 1 1.9098 -2.2831 -2.2537 21 6 1.2766 -4.2435 -1.6944 22 7 1.1413 -4.6543 -2.9363 23 14 0.9031 -5.4054 -0.2803 24 1 -0.5278 -5.2821 0.0971 25 1 1.1860 -6.8018 -0.6990 26 1 1.7542 -5.0562 0.8855 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1212 0.0007 31 1 4.6741 2.4387 0.0105 32 1 5.7394 -2.0473 -1.0428 33 1 7.1677 -3.4772 -3.6713 34 1 5.4205 -3.4111 -3.3376 35 1 6.0705 -2.6828 -4.8261 36 1 8.4711 -0.5207 -5.0825 37 1 6.8441 -0.9391 -5.6708 38 1 7.2541 0.7567 -5.3181 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.8472 -5.5606 -3.1181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271066634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:05 Heat of formation + Delta-G solvation = 38.076343 kcal Electronic energy + Delta-G solvation = -28004.139222 eV Core-core repulsion = 24048.093078 eV Total energy + Delta-G solvation = -3956.046144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33142 -42.15931 -38.42066 -37.12132 -36.83756 -35.25734 -35.17864 -32.97880 -32.91469 -32.79158 -28.91175 -28.59008 -28.02799 -27.77582 -24.60919 -23.47199 -22.23124 -21.51110 -21.20236 -19.91628 -19.20550 -18.86558 -18.71153 -17.81709 -17.07558 -17.02752 -16.96885 -16.41737 -16.14744 -15.68585 -15.31746 -14.96738 -14.77586 -14.48209 -14.31195 -14.20231 -13.87803 -13.71787 -13.70501 -13.49724 -13.45375 -13.37139 -13.29949 -13.24828 -13.22155 -12.82516 -12.76116 -12.58647 -12.41647 -11.88118 -11.68829 -11.47591 -11.34816 -10.95730 -10.87828 -9.89835 -9.68894 -9.18427 -8.39356 -6.48627 -0.81681 0.51732 1.06841 1.24972 1.35138 1.38584 1.46759 1.55951 1.65470 1.86744 2.11506 2.26541 2.59684 2.93348 3.07645 3.54432 3.60593 3.70284 3.82776 3.89564 4.15295 4.23237 4.37049 4.47471 4.54620 4.59275 4.60905 4.67763 4.74306 4.84660 4.90387 4.93261 4.95960 5.09426 5.17286 5.23183 5.27222 5.67617 5.91459 5.98335 6.01519 6.37733 6.54168 6.60456 6.87068 7.15002 8.75959 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.005080 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.485930 B = 5510.367939 C = 7182.693580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.102 3.898 3 C -0.300 4.300 4 C 0.287 3.713 5 N -0.999 5.999 6 S 2.750 3.250 7 O -0.963 6.963 8 O -0.960 6.960 9 C -0.582 4.582 10 C 0.090 3.910 11 N -0.451 5.451 12 C 0.059 3.941 13 C 0.202 3.798 14 C -0.065 4.065 15 N -0.452 5.452 16 N -0.358 5.358 17 N -0.339 5.339 18 C 0.237 3.763 19 C -0.541 4.541 20 H 0.030 0.970 21 C 0.031 3.969 22 N -0.931 5.931 23 Si 0.936 3.064 24 H -0.253 1.253 25 H -0.280 1.280 26 H -0.249 1.249 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.181 0.819 31 H 0.448 0.552 32 H 0.187 0.813 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 7.017 -0.388 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C -0.332 4.332 4 C 0.031 3.969 5 N -0.756 5.756 6 S 2.837 3.163 7 O -0.953 6.953 8 O -0.950 6.950 9 C -0.793 4.793 10 C -0.054 4.054 11 N -0.130 5.130 12 C -0.082 4.082 13 C -0.064 4.064 14 C -0.124 4.124 15 N -0.171 5.171 16 N -0.188 5.188 17 N -0.121 5.121 18 C 0.117 3.883 19 C -0.579 4.579 20 H 0.048 0.952 21 C -0.169 4.169 22 N -0.569 5.569 23 Si 0.759 3.241 24 H -0.177 1.177 25 H -0.206 1.206 26 H -0.173 1.173 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.198 0.802 31 H 0.289 0.711 32 H 0.204 0.796 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.105 6.262 -0.046 8.745 hybrid contribution -1.128 -0.836 -0.300 1.436 sum 4.977 5.426 -0.346 7.371 Atomic orbital electron populations 1.20593 0.84840 1.04758 1.04616 1.21710 0.96697 0.86145 0.98262 1.21056 0.88626 1.00616 1.22901 1.18854 0.88296 0.89498 1.00270 1.52418 1.18881 1.17167 1.87126 1.00236 0.71318 0.72397 0.72311 1.93545 1.59747 1.54600 1.87444 1.93589 1.85776 1.61564 1.54029 1.32837 1.22260 1.05263 1.18988 1.22803 0.98303 0.97310 0.86991 1.45830 1.45031 1.13158 1.09023 1.22520 1.04871 0.81540 0.99231 1.24574 1.00834 0.81605 0.99420 1.20474 1.03100 1.05596 0.83182 1.70191 1.18744 1.30327 0.97837 1.77216 1.00351 1.09401 1.31820 1.48393 1.01444 1.07231 1.54989 1.19819 0.96374 0.74698 0.97363 1.21150 1.47425 0.98456 0.90866 0.95177 1.25611 0.93919 0.99010 0.98367 1.70001 1.46964 1.19099 1.20875 0.85881 0.80435 0.78163 0.79661 1.17718 1.20578 1.17272 0.87991 0.91585 0.87525 0.80191 0.71145 0.79560 0.87152 0.90240 0.86419 0.87661 0.88232 0.88381 0.93603 0.90998 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.89 71.24 0.70 -1.64 16 2 C 0.10 3.59 6.92 41.39 0.29 3.88 16 3 C -0.30 -9.70 10.74 22.11 0.24 -9.46 16 4 C 0.29 10.74 7.72 133.39 1.03 11.77 16 5 N -1.00 -32.02 5.91 -54.61 -0.32 -32.35 16 6 S 2.75 100.93 5.65 -56.49 -0.32 100.61 16 7 O -0.96 -37.05 18.02 -128.00 -2.31 -39.36 16 8 O -0.96 -39.83 17.05 -128.00 -2.18 -42.01 16 9 C -0.58 -22.31 7.06 83.52 0.59 -21.72 16 10 C 0.09 3.38 10.77 83.09 0.89 4.28 16 11 N -0.45 -14.09 3.15 -537.62 -1.69 -15.79 16 12 C 0.06 1.34 10.97 127.77 1.40 2.75 16 13 C 0.20 6.13 7.90 138.13 1.09 7.23 16 14 C -0.07 -1.19 10.19 71.23 0.73 -0.46 16 15 N -0.45 -16.67 11.25 -185.63 -2.09 -18.76 16 16 N -0.36 -15.54 11.01 -54.54 -0.60 -16.14 16 17 N -0.34 -14.42 3.59 -338.42 -1.22 -15.64 16 18 C 0.24 10.53 4.88 85.64 0.42 10.95 16 19 C -0.54 -28.37 9.94 25.60 0.25 -28.11 16 20 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 21 C 0.03 1.63 5.47 84.66 0.46 2.09 16 22 N -0.93 -52.16 13.96 21.45 0.30 -51.87 16 23 Si 0.94 38.37 27.47 68.60 1.88 40.26 16 24 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.25 -9.64 6.54 99.48 0.65 -8.99 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 1.99 7.71 -2.39 -0.02 1.97 16 29 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.45 10.64 8.96 -96.75 -0.87 9.78 16 32 H 0.19 7.28 7.97 -2.91 -0.02 7.26 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.12 2.03 7.05 -2.39 -0.02 2.01 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.34 7.07 -2.38 -0.02 1.32 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 2.08 7.20 -2.38 -0.02 2.06 16 40 H 0.07 2.81 7.07 -2.38 -0.02 2.80 16 41 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -79.90 366.57 -0.29 -80.20 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.16 Total: 29.29 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 8.10 Total: -18.46 kcal Atomic # 7 Polarization: -144.92 SS G_CDS: -5.62 Total: -150.54 kcal Atomic # 8 Polarization: -76.87 SS G_CDS: -4.49 Total: -81.36 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.88 Total: 40.26 kcal Atomic # 16 Polarization: 100.93 SS G_CDS: -0.32 Total: 100.61 kcal Total: -79.90 -0.29 -80.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271066634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.275 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds