Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47214 * 274.75054 * 3 2 1 5 5 H 1.48504 * 109.47036 * 34.75226 * 3 2 1 6 6 H 1.48491 * 109.47058 * 154.75082 * 3 2 1 7 7 C 1.37870 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99988 * 4.81600 * 7 2 1 9 9 C 1.50700 * 120.00363 * 184.82011 * 7 2 1 10 10 N 1.46493 * 109.47291 * 182.59970 * 9 7 2 11 11 C 1.46506 * 120.00158 * 267.76041 * 10 9 7 12 12 C 1.50697 * 109.47213 * 270.00258 * 11 10 9 13 13 C 1.34510 * 125.78620 * 90.00200 * 12 11 10 14 14 C 1.41381 * 106.84274 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84018 * 359.97438 * 14 13 12 16 16 O 1.34297 * 125.79248 * 269.69140 * 12 11 10 17 17 C 1.34773 * 120.00063 * 87.76755 * 10 9 7 18 18 O 1.21629 * 120.00408 * 175.46030 * 17 10 9 19 19 C 1.47160 * 120.00196 * 355.46274 * 17 10 9 20 20 C 1.38405 * 126.88155 * 352.64193 * 19 17 10 21 21 C 1.39677 * 105.36142 * 179.73656 * 20 19 17 22 22 N 1.30861 * 107.85779 * 0.26253 * 21 20 19 23 23 N 1.28439 * 110.92887 * 359.97438 * 22 21 20 24 24 C 1.46506 * 125.18860 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47538 * 86.67181 * 24 23 22 26 26 F 1.39896 * 109.47487 * 174.32427 * 25 24 23 27 27 F 1.39909 * 109.46858 * 294.32506 * 25 24 23 28 28 H 0.96993 * 119.99600 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46981 * 62.59737 * 9 7 2 30 30 H 1.08996 * 109.46729 * 302.60341 * 9 7 2 31 31 H 1.08998 * 109.46491 * 30.00708 * 11 10 9 32 32 H 1.08997 * 109.46948 * 149.99934 * 11 10 9 33 33 H 1.08005 * 126.58085 * 359.96107 * 13 12 11 34 34 H 1.08000 * 126.58437 * 179.97438 * 14 13 12 35 35 H 1.07996 * 125.79235 * 180.02562 * 15 14 13 36 36 H 1.08003 * 127.32327 * 359.97438 * 20 19 17 37 37 H 1.08000 * 126.07038 * 180.26136 * 21 20 19 38 38 H 1.08998 * 109.46887 * 206.67004 * 24 23 22 39 39 H 1.09002 * 109.47317 * 326.66957 * 24 23 22 40 40 H 1.08998 * 109.47099 * 54.31854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3963 2.1044 -1.3952 5 1 1.5005 2.6216 0.7981 6 1 3.5933 1.4133 0.5972 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0795 9 6 3.5076 -1.1964 0.1091 10 7 4.0013 -2.5730 0.0236 11 6 4.2026 -3.3562 1.2453 12 6 5.6083 -3.1506 1.7479 13 6 6.0040 -2.1961 2.6091 14 6 7.3934 -2.3703 2.8037 15 6 7.7637 -3.4213 2.0501 16 8 6.6774 -3.8928 1.4165 17 6 4.2704 -3.1190 -1.1788 18 8 4.7578 -4.2313 -1.2464 19 6 3.9746 -2.3693 -2.4101 20 6 3.2971 -1.1663 -2.5077 21 6 3.2775 -0.8623 -3.8709 22 7 3.8945 -1.8259 -4.5059 23 7 4.3111 -2.7225 -3.6860 24 6 5.0412 -3.9360 -4.0614 25 6 6.5383 -3.6289 -4.1330 26 9 7.2467 -4.8129 -4.3639 27 9 6.7804 -2.7295 -5.1770 28 1 -0.4849 0.8400 -0.0004 29 1 3.8029 -0.7632 1.0648 30 1 3.9321 -0.6070 -0.7036 31 1 3.4933 -3.0310 2.0063 32 1 4.0448 -4.4129 1.0295 33 1 5.3800 -1.4413 3.0645 34 1 8.0346 -1.7741 3.4360 35 1 8.7640 -3.8206 1.9711 36 1 2.8767 -0.5843 -1.7010 37 1 2.8323 0.0128 -4.3208 38 1 4.8646 -4.7114 -3.3160 39 1 4.6943 -4.2822 -5.0350 40 1 6.8642 -3.1882 -3.1909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279340546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -8.462065 kcal Electronic energy + Delta-G solvation = -30456.144057 eV Core-core repulsion = 25911.946719 eV Total energy + Delta-G solvation = -4544.197338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.04582 -47.04237 -42.37737 -42.16108 -39.09603 -35.90553 -33.73126 -33.12791 -32.70172 -31.45376 -29.66182 -28.85679 -28.16027 -25.90003 -23.78148 -23.08158 -21.94114 -21.48713 -21.28770 -20.24576 -19.21988 -17.63271 -17.47830 -17.36209 -17.04040 -17.01736 -16.34076 -16.19370 -15.78518 -15.09234 -15.04130 -14.51245 -14.33248 -14.10653 -13.99425 -13.73100 -13.46445 -13.39664 -13.21495 -12.82738 -12.75892 -12.65460 -12.58112 -12.49223 -12.11917 -11.64046 -11.28047 -11.23460 -11.07523 -10.92948 -10.48196 -10.01646 -9.87229 -9.75418 -9.63204 -8.95014 -8.88876 -8.48424 -8.38708 -8.14856 -6.40428 -4.42199 1.62613 1.82505 2.45358 2.74295 2.98832 3.05469 3.14120 3.17674 3.19096 3.53456 3.70740 3.77277 4.08548 4.12184 4.32865 4.69899 4.82823 4.88798 4.90906 5.01518 5.17768 5.19726 5.33182 5.48112 5.52128 5.73625 5.83216 5.93151 6.05666 6.11078 6.15478 6.24763 6.46261 6.54004 6.64609 6.96490 6.99581 7.09826 7.21453 7.32797 7.73940 8.14941 8.34810 8.51463 8.67769 9.13836 10.71109 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007886 B = 0.006228 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.546388 B = 4494.643745 C = 7112.128447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.852 3.148 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.187 3.813 10 N -0.569 5.569 11 C 0.199 3.801 12 C -0.019 4.019 13 C -0.202 4.202 14 C -0.217 4.217 15 C -0.049 4.049 16 O -0.165 6.165 17 C 0.595 3.405 18 O -0.565 6.565 19 C -0.046 4.046 20 C -0.161 4.161 21 C -0.013 4.013 22 N -0.276 5.276 23 N -0.277 5.277 24 C 0.076 3.924 25 C 0.256 3.744 26 F -0.195 7.195 27 F -0.196 7.196 28 H 0.270 0.730 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.197 0.803 36 H 0.213 0.787 37 H 0.184 0.816 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.551 -3.580 0.074 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.124 4.124 3 Si 0.676 3.324 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.102 0.898 9 C 0.067 3.933 10 N -0.297 5.297 11 C 0.076 3.924 12 C -0.071 4.071 13 C -0.222 4.222 14 C -0.236 4.236 15 C -0.117 4.117 16 O -0.060 6.060 17 C 0.383 3.617 18 O -0.446 6.446 19 C -0.171 4.171 20 C -0.188 4.188 21 C -0.190 4.190 22 N -0.107 5.107 23 N -0.066 5.066 24 C -0.047 4.047 25 C 0.201 3.799 26 F -0.176 7.176 27 F -0.178 7.178 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.214 0.786 36 H 0.229 0.771 37 H 0.201 0.799 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.997 -4.759 -1.267 12.968 hybrid contribution 0.203 1.505 0.837 1.735 sum 12.200 -3.253 -0.430 12.633 Atomic orbital electron populations 1.69870 1.06151 1.27576 1.47516 1.24849 0.94778 0.98642 0.94129 0.87236 0.80945 0.84446 0.79733 1.18907 1.20312 1.18313 1.21280 0.88865 0.95599 1.52577 0.89751 1.20605 0.95982 0.77751 0.98969 1.47610 1.62525 1.16129 1.03480 1.19797 0.86798 0.98312 0.87491 1.23136 0.89890 0.94244 0.99791 1.21685 0.95620 1.01776 1.03093 1.21801 0.95959 1.00987 1.04890 1.24004 0.91206 0.98321 0.98173 1.84111 1.15839 1.49396 1.56640 1.16885 0.77598 0.84592 0.82579 1.90690 1.46635 1.20191 1.87124 1.21254 1.09903 0.99601 0.86342 1.24311 0.99265 0.96049 0.99173 1.23753 1.03177 0.99287 0.92806 1.73144 1.15092 1.00147 1.22284 1.45104 1.41322 1.17069 1.03149 1.22985 0.88858 0.85904 1.06953 1.22092 0.91588 0.76336 0.89840 1.92994 1.80022 1.48765 1.95849 1.93032 1.95348 1.67925 1.61472 0.91931 0.94259 0.93346 0.86239 0.88591 0.83318 0.83783 0.78593 0.77100 0.79863 0.83472 0.86565 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.28 13.96 55.43 0.77 -22.51 16 2 C 0.08 1.99 5.12 -17.82 -0.09 1.90 16 3 Si 0.85 17.73 26.50 -169.99 -4.51 13.23 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.10 6.59 56.52 0.37 -4.73 16 7 C -0.55 -12.82 7.85 -34.44 -0.27 -13.09 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.19 3.78 3.70 -5.20 -0.02 3.76 16 10 N -0.57 -10.77 2.44 -177.81 -0.43 -11.21 16 11 C 0.20 3.26 5.89 -5.19 -0.03 3.23 16 12 C -0.02 -0.30 6.90 -35.63 -0.25 -0.55 16 13 C -0.20 -2.94 10.81 -39.70 -0.43 -3.36 16 14 C -0.22 -2.78 10.91 -39.70 -0.43 -3.21 16 15 C -0.05 -0.62 12.09 29.42 0.36 -0.26 16 16 O -0.16 -2.64 10.65 5.72 0.06 -2.58 16 17 C 0.60 11.68 7.63 -12.64 -0.10 11.59 16 18 O -0.56 -11.21 14.24 5.25 0.07 -11.13 16 19 C -0.05 -0.90 6.79 -82.06 -0.56 -1.46 16 20 C -0.16 -3.20 8.32 -38.98 -0.32 -3.52 16 21 C -0.01 -0.23 12.03 -17.43 -0.21 -0.44 16 22 N -0.28 -5.02 11.90 30.59 0.36 -4.65 16 23 N -0.28 -4.92 3.34 -57.14 -0.19 -5.11 16 24 C 0.08 1.10 6.15 -4.04 -0.02 1.08 16 25 C 0.26 3.58 5.55 37.15 0.21 3.79 16 26 F -0.19 -2.67 17.34 2.25 0.04 -2.63 16 27 F -0.20 -3.03 17.33 2.25 0.04 -2.99 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.04 0.77 7.51 -51.93 -0.39 0.38 16 30 H 0.05 0.99 4.14 -51.93 -0.22 0.77 16 31 H 0.12 1.78 8.07 -51.93 -0.42 1.36 16 32 H 0.10 1.55 7.49 -51.93 -0.39 1.16 16 33 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.20 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.21 4.47 1.93 -52.48 -0.10 4.37 16 37 H 0.18 2.73 8.06 -52.49 -0.42 2.31 16 38 H 0.15 2.17 6.02 -51.93 -0.31 1.86 16 39 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -28.88 348.28 -4.65 -33.53 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.95 Total: 11.35 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.17 Total: -0.55 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.51 Total: -43.48 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.14 Total: -13.71 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.08 Total: -5.62 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -4.51 Total: 13.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.88 -4.65 -33.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279340546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.073 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds