Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47214 * 274.75054 * 3 2 1 5 5 H 1.48504 * 109.47036 * 34.75226 * 3 2 1 6 6 H 1.48491 * 109.47058 * 154.75082 * 3 2 1 7 7 C 1.37870 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99988 * 4.81600 * 7 2 1 9 9 C 1.50700 * 120.00363 * 184.82011 * 7 2 1 10 10 N 1.46493 * 109.47291 * 182.59970 * 9 7 2 11 11 C 1.46506 * 120.00158 * 267.76041 * 10 9 7 12 12 C 1.50697 * 109.47213 * 270.00258 * 11 10 9 13 13 C 1.34510 * 125.78620 * 90.00200 * 12 11 10 14 14 C 1.41381 * 106.84274 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84018 * 359.97438 * 14 13 12 16 16 O 1.34297 * 125.79248 * 269.69140 * 12 11 10 17 17 C 1.34773 * 120.00063 * 87.76755 * 10 9 7 18 18 O 1.21629 * 120.00408 * 175.46030 * 17 10 9 19 19 C 1.47160 * 120.00196 * 355.46274 * 17 10 9 20 20 C 1.38405 * 126.88155 * 352.64193 * 19 17 10 21 21 C 1.39677 * 105.36142 * 179.73656 * 20 19 17 22 22 N 1.30861 * 107.85779 * 0.26253 * 21 20 19 23 23 N 1.28439 * 110.92887 * 359.97438 * 22 21 20 24 24 C 1.46506 * 125.18860 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47538 * 86.67181 * 24 23 22 26 26 F 1.39896 * 109.47487 * 174.32427 * 25 24 23 27 27 F 1.39909 * 109.46858 * 294.32506 * 25 24 23 28 28 H 0.96993 * 119.99600 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46981 * 62.59737 * 9 7 2 30 30 H 1.08996 * 109.46729 * 302.60341 * 9 7 2 31 31 H 1.08998 * 109.46491 * 30.00708 * 11 10 9 32 32 H 1.08997 * 109.46948 * 149.99934 * 11 10 9 33 33 H 1.08005 * 126.58085 * 359.96107 * 13 12 11 34 34 H 1.08000 * 126.58437 * 179.97438 * 14 13 12 35 35 H 1.07996 * 125.79235 * 180.02562 * 15 14 13 36 36 H 1.08003 * 127.32327 * 359.97438 * 20 19 17 37 37 H 1.08000 * 126.07038 * 180.26136 * 21 20 19 38 38 H 1.08998 * 109.46887 * 206.67004 * 24 23 22 39 39 H 1.09002 * 109.47317 * 326.66957 * 24 23 22 40 40 H 1.08998 * 109.47099 * 54.31854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3963 2.1044 -1.3952 5 1 1.5005 2.6216 0.7981 6 1 3.5933 1.4133 0.5972 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0795 9 6 3.5076 -1.1964 0.1091 10 7 4.0013 -2.5730 0.0236 11 6 4.2026 -3.3562 1.2453 12 6 5.6083 -3.1506 1.7479 13 6 6.0040 -2.1961 2.6091 14 6 7.3934 -2.3703 2.8037 15 6 7.7637 -3.4213 2.0501 16 8 6.6774 -3.8928 1.4165 17 6 4.2704 -3.1190 -1.1788 18 8 4.7578 -4.2313 -1.2464 19 6 3.9746 -2.3693 -2.4101 20 6 3.2971 -1.1663 -2.5077 21 6 3.2775 -0.8623 -3.8709 22 7 3.8945 -1.8259 -4.5059 23 7 4.3111 -2.7225 -3.6860 24 6 5.0412 -3.9360 -4.0614 25 6 6.5383 -3.6289 -4.1330 26 9 7.2467 -4.8129 -4.3639 27 9 6.7804 -2.7295 -5.1770 28 1 -0.4849 0.8400 -0.0004 29 1 3.8029 -0.7632 1.0648 30 1 3.9321 -0.6070 -0.7036 31 1 3.4933 -3.0310 2.0063 32 1 4.0448 -4.4129 1.0295 33 1 5.3800 -1.4413 3.0645 34 1 8.0346 -1.7741 3.4360 35 1 8.7640 -3.8206 1.9711 36 1 2.8767 -0.5843 -1.7010 37 1 2.8323 0.0128 -4.3208 38 1 4.8646 -4.7114 -3.3160 39 1 4.6943 -4.2822 -5.0350 40 1 6.8642 -3.1882 -3.1909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279340546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -25.050083 kcal Electronic energy + Delta-G solvation = -30456.863368 eV Core-core repulsion = 25911.946719 eV Total energy + Delta-G solvation = -4544.916649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.19460 -48.19405 -43.63260 -43.42248 -40.59077 -37.44599 -35.04223 -34.80664 -33.87403 -32.87390 -31.00226 -30.26496 -29.68633 -27.16154 -25.08062 -24.69965 -23.38560 -22.71338 -22.53433 -21.40812 -20.59265 -19.16011 -18.83181 -18.59719 -18.38049 -18.25599 -17.75619 -17.51104 -17.09881 -16.50296 -16.34961 -15.98194 -15.78876 -15.42321 -15.35119 -15.01489 -14.86383 -14.62970 -14.54751 -14.38658 -14.01676 -13.88501 -13.67981 -13.57001 -13.44734 -13.12886 -12.72904 -12.58717 -12.49601 -12.41745 -12.10027 -11.71728 -11.49718 -11.17668 -10.81140 -10.78532 -10.30634 -9.97852 -9.75160 -9.41497 -8.28704 -6.34388 0.14658 0.69444 1.15608 1.42288 1.47359 1.53315 1.57363 1.68720 2.03131 2.13675 2.34233 2.35415 2.54636 2.98479 3.05188 3.17229 3.35848 3.57290 3.75657 3.81603 4.09524 4.16410 4.18126 4.18250 4.34448 4.38444 4.54223 4.57487 4.65062 4.85587 4.94991 5.03383 5.06195 5.20700 5.38109 5.45588 5.56841 5.64272 5.65413 6.08123 6.26092 6.39591 6.70302 6.89163 7.02832 7.26057 8.86609 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007886 B = 0.006228 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.546388 B = 4494.643745 C = 7112.128447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.037 3.963 3 Si 0.907 3.093 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.237 1.237 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.197 3.803 10 N -0.571 5.571 11 C 0.198 3.802 12 C -0.046 4.046 13 C -0.201 4.201 14 C -0.224 4.224 15 C -0.043 4.043 16 O -0.189 6.189 17 C 0.589 3.411 18 O -0.572 6.572 19 C -0.057 4.057 20 C -0.182 4.182 21 C -0.013 4.013 22 N -0.278 5.278 23 N -0.274 5.274 24 C 0.072 3.928 25 C 0.266 3.734 26 F -0.191 7.191 27 F -0.203 7.203 28 H 0.271 0.729 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.236 0.764 36 H 0.200 0.800 37 H 0.212 0.788 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.009 -2.791 0.125 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.165 4.165 3 Si 0.729 3.271 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.160 1.160 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.076 3.924 10 N -0.299 5.299 11 C 0.076 3.924 12 C -0.097 4.097 13 C -0.221 4.221 14 C -0.243 4.243 15 C -0.111 4.111 16 O -0.085 6.085 17 C 0.378 3.622 18 O -0.454 6.454 19 C -0.183 4.183 20 C -0.209 4.209 21 C -0.190 4.190 22 N -0.109 5.109 23 N -0.064 5.064 24 C -0.050 4.050 25 C 0.211 3.789 26 F -0.173 7.173 27 F -0.185 7.185 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.109 0.891 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.252 0.748 36 H 0.217 0.783 37 H 0.228 0.772 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.483 -3.995 -1.212 15.073 hybrid contribution -0.529 1.127 0.836 1.500 sum 13.954 -2.868 -0.376 14.251 Atomic orbital electron populations 1.70012 1.08156 1.28505 1.49880 1.25549 0.95222 1.02069 0.93616 0.86336 0.80516 0.79833 0.80441 1.17574 1.20891 1.15957 1.21259 0.90532 0.93804 1.51586 0.94174 1.20414 0.93554 0.78784 0.99659 1.47659 1.62193 1.15889 1.04206 1.19848 0.88153 0.97682 0.86732 1.22915 0.89670 0.95646 1.01478 1.21960 0.96853 1.01149 1.02184 1.22155 0.95369 1.01410 1.05330 1.24855 0.91691 0.97828 0.96719 1.84086 1.16674 1.50121 1.57604 1.17019 0.77660 0.84644 0.82905 1.90673 1.47060 1.20371 1.87282 1.21335 1.10221 0.99731 0.86992 1.24216 1.00289 0.96529 0.99875 1.24177 1.02748 1.00007 0.92055 1.73148 1.15173 1.00288 1.22304 1.45330 1.40959 1.17540 1.02522 1.23171 0.89152 0.84739 1.07923 1.21959 0.91073 0.76248 0.89646 1.93003 1.79857 1.48583 1.95827 1.93021 1.95356 1.68229 1.61850 0.91973 0.92948 0.92658 0.85445 0.89118 0.82524 0.81025 0.74821 0.78336 0.77183 0.83709 0.84506 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.69 13.96 21.45 0.30 -50.39 16 2 C 0.04 1.79 5.12 84.65 0.43 2.23 16 3 Si 0.91 35.75 26.50 68.60 1.82 37.57 16 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.24 -8.40 6.59 99.48 0.66 -7.75 16 7 C -0.53 -25.58 7.85 25.60 0.20 -25.38 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 9 C 0.20 7.83 3.70 85.63 0.32 8.15 16 10 N -0.57 -21.64 2.44 -834.72 -2.04 -23.68 16 11 C 0.20 6.52 5.89 85.63 0.50 7.03 16 12 C -0.05 -1.43 6.90 24.83 0.17 -1.25 16 13 C -0.20 -5.48 10.81 22.19 0.24 -5.24 16 14 C -0.22 -5.06 10.91 22.19 0.24 -4.82 16 15 C -0.04 -0.98 12.09 66.97 0.81 -0.17 16 16 O -0.19 -5.80 10.65 -2.46 -0.03 -5.83 16 17 C 0.59 23.14 7.63 86.59 0.66 23.80 16 18 O -0.57 -22.66 14.24 -4.12 -0.06 -22.72 16 19 C -0.06 -2.21 6.79 40.79 0.28 -1.93 16 20 C -0.18 -7.11 8.32 22.66 0.19 -6.92 16 21 C -0.01 -0.45 12.03 85.19 1.02 0.58 16 22 N -0.28 -9.71 11.90 -57.14 -0.68 -10.39 16 23 N -0.27 -9.45 3.34 -334.69 -1.12 -10.57 16 24 C 0.07 2.00 6.15 86.38 0.53 2.53 16 25 C 0.27 7.01 5.55 71.98 0.40 7.41 16 26 F -0.19 -4.92 17.34 44.97 0.78 -4.14 16 27 F -0.20 -5.91 17.33 44.97 0.78 -5.14 16 28 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.05 1.96 7.51 -2.39 -0.02 1.94 16 30 H 0.06 2.19 4.14 -2.39 -0.01 2.18 16 31 H 0.13 3.85 8.07 -2.39 -0.02 3.83 16 32 H 0.09 3.02 7.49 -2.39 -0.02 3.00 16 33 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.24 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.20 8.33 1.93 -2.91 -0.01 8.32 16 37 H 0.21 5.84 8.06 -2.91 -0.02 5.81 16 38 H 0.15 4.16 6.02 -2.39 -0.01 4.14 16 39 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -62.66 348.28 6.81 -55.85 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 1.06 Total: 33.43 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 6.00 Total: 6.00 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.54 Total: -95.03 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.08 Total: -28.55 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 1.56 Total: -9.28 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 1.82 Total: 37.57 kcal Total: -62.66 6.81 -55.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279340546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.801 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds