Wall clock time and date at job start Tue Mar 31 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39870 * 126.03645 * 2 1 4 4 N 1.30838 * 108.20007 * 180.23617 * 3 2 1 5 5 N 1.40079 * 108.20490 * 359.77315 * 4 3 2 6 6 C 1.46499 * 126.03643 * 180.02562 * 5 4 3 7 7 C 1.34943 * 107.92693 * 0.02562 * 5 4 3 8 8 S 1.76205 * 126.12694 * 179.97438 * 7 5 4 9 9 O 1.42103 * 106.40179 * 336.48346 * 8 7 5 10 10 O 1.42095 * 106.40086 * 203.55883 * 8 7 5 11 11 N 1.65604 * 107.21594 * 90.01984 * 8 7 5 12 12 C 1.39992 * 119.99959 * 65.00443 * 11 8 7 13 13 C 1.40428 * 125.97582 * 180.23225 * 12 11 8 14 14 C 1.35244 * 107.86169 * 180.14339 * 13 12 11 15 15 C 1.50703 * 126.06821 * 179.90447 * 14 13 12 16 16 N 1.34960 * 107.86266 * 359.63649 * 14 13 12 17 17 C 1.46498 * 125.97191 * 180.22991 * 16 14 13 18 18 C 1.50707 * 109.47366 * 90.00120 * 17 16 14 19 19 H 1.08005 * 119.99361 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00150 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00047 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46994 * 120.00062 * 22 20 18 25 25 H 1.48492 * 109.47549 * 239.99918 * 22 20 18 26 26 N 1.31220 * 125.97468 * 359.97124 * 12 11 8 27 27 H 1.08998 * 109.47074 * 270.14932 * 1 2 3 28 28 H 1.08995 * 109.47385 * 30.15380 * 1 2 3 29 29 H 1.09004 * 109.47076 * 150.15877 * 1 2 3 30 30 H 1.07997 * 125.90082 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47527 * 269.98029 * 6 5 4 32 32 H 1.09003 * 109.47336 * 29.97707 * 6 5 4 33 33 H 1.09000 * 109.47273 * 149.97839 * 6 5 4 34 34 H 0.96999 * 119.99804 * 244.99536 * 11 8 7 35 35 H 1.08003 * 126.06914 * 0.02562 * 13 12 11 36 36 H 1.09002 * 109.47152 * 269.68518 * 15 14 13 37 37 H 1.09001 * 109.46980 * 149.68618 * 15 14 13 38 38 H 1.09004 * 109.47113 * 29.68599 * 15 14 13 39 39 H 1.09006 * 109.47531 * 210.00084 * 17 16 14 40 40 H 1.09008 * 109.47462 * 330.00263 * 17 16 14 41 41 H 0.96996 * 119.99839 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 -0.0051 5 7 3.5844 -0.6705 -0.0033 6 6 4.7745 -1.5247 -0.0070 7 6 2.3032 -1.0941 0.0025 8 16 1.7636 -2.7715 0.0064 9 8 2.8284 -3.5367 -0.5414 10 8 0.4490 -2.7713 -0.5329 11 7 1.6197 -3.2365 1.5893 12 6 0.6633 -2.6305 2.4126 13 6 0.4370 -2.9227 3.7674 14 6 -0.5681 -2.1284 4.2008 15 6 -1.1434 -2.1055 5.5935 16 7 -0.9605 -1.3556 3.1662 17 6 -2.0223 -0.3468 3.1999 18 6 -1.4365 0.9863 3.5884 19 1 -0.3790 1.0731 3.7905 20 6 -2.2504 2.0950 3.6859 21 7 -3.5380 1.9890 3.4404 22 14 -1.5243 3.7470 4.1682 23 1 -0.0633 3.6000 4.3897 24 1 -1.7631 4.7292 3.0802 25 1 -2.1691 4.2256 5.4173 26 7 -0.1753 -1.6869 2.0546 27 1 -0.3633 0.0027 1.0276 28 1 -0.3634 0.8885 -0.5162 29 1 -0.3633 -0.8914 -0.5114 30 1 1.9950 2.1578 0.0004 31 1 5.0654 -1.7382 -1.0356 32 1 5.5909 -1.0127 0.5024 33 1 4.5530 -2.4587 0.5093 34 1 2.1981 -3.9287 1.9459 35 1 0.9697 -3.6535 4.3579 36 1 -1.9696 -2.8137 5.6570 37 1 -1.5059 -1.1029 5.8204 38 1 -0.3707 -2.3834 6.3104 39 1 -2.4808 -0.2687 2.2141 40 1 -2.7776 -0.6383 3.9299 41 1 -4.1106 2.7689 3.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285017295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:00 Heat of formation + Delta-G solvation = 92.031316 kcal Electronic energy + Delta-G solvation = -28656.902047 eV Core-core repulsion = 24703.195566 eV Total energy + Delta-G solvation = -3953.706481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10908 -40.69620 -37.42972 -35.97079 -35.47034 -33.56731 -33.39163 -31.73319 -31.34914 -30.86451 -27.98426 -26.83153 -26.46970 -25.11208 -23.20330 -21.99766 -20.99201 -20.58182 -20.09485 -18.62593 -17.52784 -17.22714 -16.76726 -16.54191 -15.67128 -15.47423 -15.33330 -14.81313 -14.59380 -14.29546 -13.92288 -13.37385 -13.29782 -13.15676 -12.94927 -12.71336 -12.59153 -12.56937 -12.24660 -12.23053 -12.07554 -11.95261 -11.77537 -11.71642 -11.48776 -11.31030 -10.92911 -10.88931 -10.79269 -10.50311 -10.33327 -9.72707 -9.69122 -9.64079 -8.71497 -8.27683 -8.15067 -7.73727 -6.32914 -4.40933 0.19146 1.37278 2.42424 2.55259 2.63679 2.85078 3.15349 3.21595 3.24697 3.29112 3.45757 3.69805 4.23715 4.31369 4.58039 4.87495 5.03235 5.09679 5.14741 5.21802 5.37085 5.44184 5.54385 5.66920 5.84572 5.92758 5.98081 6.03995 6.17973 6.42479 6.48308 6.61003 6.63876 6.73577 6.87233 6.93156 7.02204 7.15436 7.45343 7.56645 7.58803 7.79064 7.86996 8.36833 8.66259 9.26391 10.74413 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.005052 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.016796 B = 5541.498900 C = 6813.968132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 C 0.025 3.975 4 N -0.255 5.255 5 N -0.325 5.325 6 C 0.093 3.907 7 C -0.513 4.513 8 S 2.718 3.282 9 O -0.959 6.959 10 O -0.912 6.912 11 N -1.012 6.012 12 C 0.278 3.722 13 C -0.306 4.306 14 C 0.111 3.889 15 C -0.092 4.092 16 N -0.311 5.311 17 C 0.254 3.746 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.069 3.931 21 N -0.887 5.887 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.281 1.281 26 N -0.308 5.308 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.192 0.808 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.431 0.569 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -9.003 -1.159 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C -0.160 4.160 4 N -0.079 5.079 5 N -0.112 5.112 6 C -0.048 4.048 7 C -0.720 4.720 8 S 2.803 3.197 9 O -0.949 6.949 10 O -0.900 6.900 11 N -0.766 5.766 12 C 0.023 3.977 13 C -0.340 4.340 14 C -0.022 4.022 15 C -0.150 4.150 16 N -0.092 5.092 17 C 0.137 3.863 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.207 1.207 26 N -0.139 5.139 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.209 0.791 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.268 0.732 35 H 0.157 0.843 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.721 -8.186 -2.981 13.815 hybrid contribution 0.451 0.678 1.382 1.604 sum 11.172 -7.508 -1.600 13.555 Atomic orbital electron populations 1.21187 0.86727 1.03420 1.06999 1.20478 0.98371 0.89673 0.99106 1.24095 0.89510 1.00456 1.01942 1.77118 1.21896 0.89379 1.19548 1.47904 1.03475 1.04131 1.55713 1.22117 0.85230 0.93023 1.04479 1.32860 0.91897 1.23943 1.23348 1.01501 0.74086 0.72137 0.71987 1.93588 1.57003 1.68783 1.75508 1.93626 1.36168 1.85215 1.75032 1.52517 1.44569 1.49355 1.30180 1.18581 0.92602 0.95834 0.90689 1.20539 1.07951 1.11607 0.93879 1.20927 0.96023 0.92946 0.92318 1.20431 1.00795 1.04241 0.89580 1.49084 1.27371 1.28510 1.04255 1.19830 0.82371 0.83789 1.00312 1.21307 0.95523 0.92177 1.48632 0.91611 1.24885 0.94689 0.99223 0.94663 1.69919 1.03851 1.30961 1.47763 0.86367 0.79426 0.82999 0.78319 1.19592 1.20565 1.20711 1.77459 1.09065 1.17328 1.10034 0.85930 0.92035 0.88841 0.79109 0.89729 0.88851 0.89009 0.73223 0.84294 0.90760 0.89606 0.90571 0.92398 0.92612 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.58 36.01 0.31 -2.10 16 2 C -0.06 -1.13 5.96 -105.05 -0.63 -1.76 16 3 C 0.02 0.43 11.96 -17.36 -0.21 0.22 16 4 N -0.25 -4.36 12.58 30.62 0.39 -3.98 16 5 N -0.32 -5.15 4.01 -67.26 -0.27 -5.42 16 6 C 0.09 1.05 10.54 59.85 0.63 1.68 16 7 C -0.51 -8.73 6.93 -17.23 -0.12 -8.85 16 8 S 2.72 42.54 5.39 -107.50 -0.58 41.96 16 9 O -0.96 -14.33 15.78 -57.17 -0.90 -15.23 16 10 O -0.91 -16.95 14.46 -57.17 -0.83 -17.77 16 11 N -1.01 -14.25 5.91 31.39 0.19 -14.06 16 12 C 0.28 4.89 7.72 -154.55 -1.19 3.69 16 13 C -0.31 -4.97 10.74 -39.82 -0.43 -5.40 16 14 C 0.11 1.96 6.92 -82.28 -0.57 1.40 16 15 C -0.09 -1.30 9.89 36.01 0.36 -0.94 16 16 N -0.31 -6.47 3.59 -58.32 -0.21 -6.68 16 17 C 0.25 5.87 5.29 -5.19 -0.03 5.84 16 18 C -0.54 -13.45 9.39 -34.44 -0.32 -13.78 16 19 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -23.42 13.29 55.43 0.74 -22.68 16 22 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 N -0.31 -6.29 7.47 31.41 0.23 -6.06 16 27 H 0.12 2.66 5.12 -51.93 -0.27 2.39 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.83 5.54 -51.93 -0.29 1.54 16 30 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.91 6.68 -51.93 -0.35 0.57 16 34 H 0.43 4.28 8.96 -34.47 -0.31 3.97 16 35 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 1.28 7.65 -51.92 -0.40 0.88 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -31.89 355.47 -8.14 -40.03 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.93 Total: 7.89 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.30 Total: -18.34 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 1.06 Total: -58.88 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.73 Total: -33.00 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 42.54 SS G_CDS: -0.58 Total: 41.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.89 -8.14 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285017295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.062 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds