Wall clock time and date at job start Tue Mar 31 2020 22:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39870 * 126.03645 * 2 1 4 4 N 1.30838 * 108.20007 * 180.23617 * 3 2 1 5 5 N 1.40079 * 108.20490 * 359.77315 * 4 3 2 6 6 C 1.46499 * 126.03643 * 180.02562 * 5 4 3 7 7 C 1.34943 * 107.92693 * 0.02562 * 5 4 3 8 8 S 1.76205 * 126.12694 * 179.97438 * 7 5 4 9 9 O 1.42103 * 106.40179 * 336.48346 * 8 7 5 10 10 O 1.42095 * 106.40086 * 203.55883 * 8 7 5 11 11 N 1.65604 * 107.21594 * 90.01984 * 8 7 5 12 12 C 1.39992 * 119.99959 * 65.00443 * 11 8 7 13 13 C 1.40428 * 125.97582 * 180.23225 * 12 11 8 14 14 C 1.35244 * 107.86169 * 180.14339 * 13 12 11 15 15 C 1.50703 * 126.06821 * 179.90447 * 14 13 12 16 16 N 1.34960 * 107.86266 * 359.63649 * 14 13 12 17 17 C 1.46498 * 125.97191 * 180.22991 * 16 14 13 18 18 C 1.50707 * 109.47366 * 90.00120 * 17 16 14 19 19 H 1.08005 * 119.99361 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00150 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00047 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46994 * 120.00062 * 22 20 18 25 25 H 1.48492 * 109.47549 * 239.99918 * 22 20 18 26 26 N 1.31220 * 125.97468 * 359.97124 * 12 11 8 27 27 H 1.08998 * 109.47074 * 270.14932 * 1 2 3 28 28 H 1.08995 * 109.47385 * 30.15380 * 1 2 3 29 29 H 1.09004 * 109.47076 * 150.15877 * 1 2 3 30 30 H 1.07997 * 125.90082 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47527 * 269.98029 * 6 5 4 32 32 H 1.09003 * 109.47336 * 29.97707 * 6 5 4 33 33 H 1.09000 * 109.47273 * 149.97839 * 6 5 4 34 34 H 0.96999 * 119.99804 * 244.99536 * 11 8 7 35 35 H 1.08003 * 126.06914 * 0.02562 * 13 12 11 36 36 H 1.09002 * 109.47152 * 269.68518 * 15 14 13 37 37 H 1.09001 * 109.46980 * 149.68618 * 15 14 13 38 38 H 1.09004 * 109.47113 * 29.68599 * 15 14 13 39 39 H 1.09006 * 109.47531 * 210.00084 * 17 16 14 40 40 H 1.09008 * 109.47462 * 330.00263 * 17 16 14 41 41 H 0.96996 * 119.99839 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 -0.0051 5 7 3.5844 -0.6705 -0.0033 6 6 4.7745 -1.5247 -0.0070 7 6 2.3032 -1.0941 0.0025 8 16 1.7636 -2.7715 0.0064 9 8 2.8284 -3.5367 -0.5414 10 8 0.4490 -2.7713 -0.5329 11 7 1.6197 -3.2365 1.5893 12 6 0.6633 -2.6305 2.4126 13 6 0.4370 -2.9227 3.7674 14 6 -0.5681 -2.1284 4.2008 15 6 -1.1434 -2.1055 5.5935 16 7 -0.9605 -1.3556 3.1662 17 6 -2.0223 -0.3468 3.1999 18 6 -1.4365 0.9863 3.5884 19 1 -0.3790 1.0731 3.7905 20 6 -2.2504 2.0950 3.6859 21 7 -3.5380 1.9890 3.4404 22 14 -1.5243 3.7470 4.1682 23 1 -0.0633 3.6000 4.3897 24 1 -1.7631 4.7292 3.0802 25 1 -2.1691 4.2256 5.4173 26 7 -0.1753 -1.6869 2.0546 27 1 -0.3633 0.0027 1.0276 28 1 -0.3634 0.8885 -0.5162 29 1 -0.3633 -0.8914 -0.5114 30 1 1.9950 2.1578 0.0004 31 1 5.0654 -1.7382 -1.0356 32 1 5.5909 -1.0127 0.5024 33 1 4.5530 -2.4587 0.5093 34 1 2.1981 -3.9287 1.9459 35 1 0.9697 -3.6535 4.3579 36 1 -1.9696 -2.8137 5.6570 37 1 -1.5059 -1.1029 5.8204 38 1 -0.3707 -2.3834 6.3104 39 1 -2.4808 -0.2687 2.2141 40 1 -2.7776 -0.6383 3.9299 41 1 -4.1106 2.7689 3.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285017295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:59 Heat of formation + Delta-G solvation = 70.104465 kcal Electronic energy + Delta-G solvation = -28657.852867 eV Core-core repulsion = 24703.195566 eV Total energy + Delta-G solvation = -3954.657300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39127 -42.09316 -38.72825 -37.29784 -36.83904 -35.22425 -34.75925 -33.05120 -32.67655 -32.48795 -29.18180 -28.48559 -27.81549 -26.37663 -24.96169 -23.27606 -22.35410 -21.88857 -21.44964 -19.94571 -18.88997 -18.65001 -18.47028 -17.84672 -17.06657 -16.81802 -16.67963 -16.23781 -16.05742 -15.84417 -15.09146 -14.72544 -14.63858 -14.45501 -14.34726 -14.15324 -13.86650 -13.77973 -13.54367 -13.48289 -13.43757 -13.38161 -13.25906 -13.07343 -13.00314 -12.72471 -12.62690 -12.44319 -12.21757 -12.17677 -11.86200 -11.49471 -11.10008 -10.92316 -10.66735 -9.65739 -9.49386 -9.17916 -8.26569 -6.41392 -1.08173 0.06804 1.14451 1.23292 1.37669 1.38757 1.43084 1.49697 1.54468 1.88892 2.06649 2.36715 2.42987 3.04884 3.07740 3.42816 3.60876 3.90926 4.05498 4.11628 4.26248 4.36029 4.43971 4.51352 4.55981 4.66430 4.78942 4.87590 4.98301 4.99515 5.04422 5.16357 5.18331 5.30661 5.32937 5.61752 5.63068 5.66614 5.83630 5.89134 6.02929 6.27303 6.31433 6.70829 6.96468 7.29146 8.79819 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.005052 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.016796 B = 5541.498900 C = 6813.968132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C 0.015 3.985 4 N -0.266 5.266 5 N -0.318 5.318 6 C 0.073 3.927 7 C -0.514 4.514 8 S 2.735 3.265 9 O -0.948 6.948 10 O -0.942 6.942 11 N -0.994 5.994 12 C 0.275 3.725 13 C -0.296 4.296 14 C 0.097 3.903 15 C -0.089 4.089 16 N -0.338 5.338 17 C 0.273 3.727 18 C -0.539 4.539 19 H 0.051 0.949 20 C 0.029 3.971 21 N -0.916 5.916 22 Si 0.959 3.041 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.272 1.272 26 N -0.341 5.341 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.209 0.791 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.451 0.549 35 H 0.181 0.819 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -10.159 -0.068 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 C -0.169 4.169 4 N -0.092 5.092 5 N -0.105 5.105 6 C -0.066 4.066 7 C -0.722 4.722 8 S 2.820 3.180 9 O -0.937 6.937 10 O -0.931 6.931 11 N -0.753 5.753 12 C 0.019 3.981 13 C -0.328 4.328 14 C -0.034 4.034 15 C -0.147 4.147 16 N -0.120 5.120 17 C 0.154 3.846 18 C -0.578 4.578 19 H 0.069 0.931 20 C -0.172 4.172 21 N -0.555 5.555 22 Si 0.784 3.216 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.198 1.198 26 N -0.172 5.172 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.226 0.774 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.292 0.708 35 H 0.199 0.801 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.997 -9.372 -1.877 16.133 hybrid contribution -0.123 0.885 1.013 1.351 sum 12.874 -8.487 -0.864 15.444 Atomic orbital electron populations 1.20976 0.87981 1.03230 1.05316 1.20459 0.97887 0.90832 1.01416 1.24399 0.89426 1.01178 1.01855 1.77079 1.21730 0.90232 1.20125 1.48336 1.04148 1.04127 1.53871 1.22630 0.84408 0.93370 1.06223 1.33040 0.92438 1.24193 1.22572 1.00971 0.73416 0.71576 0.72075 1.93594 1.56404 1.68245 1.75498 1.93596 1.38006 1.85491 1.76024 1.52279 1.44123 1.49494 1.29355 1.18908 0.92345 0.95134 0.91744 1.20988 1.07058 1.11442 0.93315 1.21685 0.96304 0.92332 0.93041 1.20540 1.02351 1.03520 0.88244 1.48818 1.28071 1.29554 1.05576 1.19289 0.83001 0.84051 0.98214 1.21382 0.94726 0.93417 1.48232 0.93057 1.25557 0.94953 1.02101 0.94633 1.69999 1.04830 1.31887 1.48741 0.85487 0.78444 0.79399 0.78243 1.19884 1.20357 1.19760 1.77437 1.10205 1.18899 1.10614 0.88498 0.91458 0.89816 0.77450 0.88105 0.86549 0.87382 0.70758 0.80146 0.88902 0.91843 0.87292 0.95385 0.93043 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 8.58 71.24 0.61 -4.09 16 2 C -0.09 -3.38 5.96 -20.14 -0.12 -3.50 16 3 C 0.02 0.51 11.96 85.24 1.02 1.53 16 4 N -0.27 -8.83 12.58 -57.02 -0.72 -9.54 16 5 N -0.32 -9.53 4.01 -366.71 -1.47 -11.01 16 6 C 0.07 1.44 10.54 127.77 1.35 2.79 16 7 C -0.51 -17.10 6.93 83.54 0.58 -16.53 16 8 S 2.74 82.19 5.39 -56.49 -0.30 81.88 16 9 O -0.95 -25.97 15.78 -128.00 -2.02 -27.99 16 10 O -0.94 -35.18 14.46 -128.00 -1.85 -37.03 16 11 N -0.99 -25.87 5.91 -54.61 -0.32 -26.19 16 12 C 0.27 9.29 7.72 133.39 1.03 10.32 16 13 C -0.30 -8.80 10.74 22.11 0.24 -8.56 16 14 C 0.10 3.34 6.92 41.39 0.29 3.63 16 15 C -0.09 -2.34 9.89 71.24 0.70 -1.64 16 16 N -0.34 -14.34 3.59 -338.42 -1.22 -15.55 16 17 C 0.27 13.18 5.29 85.64 0.45 13.63 16 18 C -0.54 -27.79 9.39 25.60 0.24 -27.55 16 19 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 20 C 0.03 1.48 5.46 84.65 0.46 1.95 16 21 N -0.92 -49.43 13.29 21.45 0.28 -49.14 16 22 Si 0.96 41.38 29.54 68.60 2.03 43.41 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 N -0.34 -14.10 7.47 -54.54 -0.41 -14.51 16 27 H 0.10 4.45 5.12 -2.39 -0.01 4.43 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.08 3.45 5.54 -2.39 -0.01 3.43 16 30 H 0.21 5.97 8.06 -2.91 -0.02 5.95 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.78 6.68 -2.39 -0.02 1.76 16 34 H 0.45 7.44 8.96 -96.75 -0.87 6.57 16 35 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 38 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.05 2.47 7.65 -2.38 -0.02 2.46 16 41 H 0.27 13.79 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -70.05 355.47 1.07 -68.98 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.22 Total: 24.72 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 6.85 Total: -28.02 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -3.85 Total: -125.94 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -3.87 Total: -65.02 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 82.19 SS G_CDS: -0.30 Total: 81.88 kcal Total: -70.05 1.07 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285017295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.085 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds