Wall clock time and date at job start Tue Mar 31 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35249 * 126.06460 * 2 1 4 4 C 1.40433 * 107.86139 * 179.90655 * 3 2 1 5 5 N 1.39990 * 125.97564 * 180.14813 * 4 3 2 6 6 S 1.65601 * 119.99595 * 175.02704 * 5 4 3 7 7 O 1.42102 * 106.40024 * 177.99231 * 6 5 4 8 8 O 1.42097 * 106.40292 * 310.90689 * 6 5 4 9 9 C 1.76192 * 107.21907 * 64.45347 * 6 5 4 10 10 C 1.35318 * 126.03674 * 244.66417 * 9 6 5 11 11 N 1.34956 * 107.74192 * 179.87260 * 10 9 6 12 12 C 1.46502 * 126.03335 * 180.14727 * 11 10 9 13 13 N 1.40079 * 107.92520 * 0.39165 * 11 10 9 14 14 C 1.30830 * 108.20885 * 359.75494 * 13 11 10 15 15 C 1.50701 * 125.90125 * 179.97438 * 14 13 11 16 16 N 1.31221 * 108.04510 * 0.36590 * 4 3 2 17 17 N 1.34959 * 126.07365 * 180.31754 * 2 1 3 18 18 C 1.46504 * 125.96812 * 359.96029 * 17 2 1 19 19 C 1.50699 * 109.47146 * 90.00278 * 18 17 2 20 20 H 1.08001 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00057 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46920 * 60.00545 * 23 21 19 25 25 H 1.48498 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47055 * 300.00270 * 23 21 19 27 27 H 1.08999 * 109.47079 * 269.68309 * 1 2 3 28 28 H 1.09000 * 109.46658 * 149.68333 * 1 2 3 29 29 H 1.08997 * 109.47316 * 29.68866 * 1 2 3 30 30 H 1.08003 * 126.06820 * 0.05022 * 3 2 1 31 31 H 0.96997 * 120.00265 * 355.02681 * 5 4 3 32 32 H 1.07996 * 126.13022 * 0.02562 * 10 9 6 33 33 H 1.08998 * 109.47275 * 270.26032 * 12 11 10 34 34 H 1.09006 * 109.47268 * 30.26379 * 12 11 10 35 35 H 1.09000 * 109.47297 * 150.26241 * 12 11 10 36 36 H 1.08991 * 109.47550 * 264.79618 * 15 14 13 37 37 H 1.08999 * 109.47019 * 24.79850 * 15 14 13 38 38 H 1.08998 * 109.47096 * 144.79201 * 15 14 13 39 39 H 1.09002 * 109.47020 * 209.99861 * 18 17 2 40 40 H 1.08998 * 109.47393 * 330.00476 * 18 17 2 41 41 H 0.96994 * 120.00255 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6373 0.6546 0.0022 5 7 4.7724 1.4739 0.0058 6 16 6.2796 0.7997 0.1323 7 8 7.2070 1.8739 0.0594 8 8 6.2237 -0.1058 1.2260 9 6 6.5364 -0.1781 -1.3107 10 6 6.6884 -1.5223 -1.3448 11 7 6.8584 -1.8844 -2.6337 12 6 7.0559 -3.2498 -3.1265 13 7 6.8183 -0.7234 -3.4165 14 6 6.6253 0.2985 -2.6227 15 6 6.5180 1.7401 -3.0483 16 7 3.6337 -0.6576 -0.0045 17 7 2.3017 -1.0908 -0.0060 18 6 1.8500 -2.4845 -0.0129 19 6 1.6944 -2.9550 -1.4361 20 1 1.9099 -2.2831 -2.2537 21 6 1.2768 -4.2434 -1.6945 22 7 1.0138 -5.0615 -0.6989 23 14 1.0832 -4.8264 -3.4586 24 1 2.3885 -4.7251 -4.1594 25 1 0.6255 -6.2391 -3.4656 26 1 0.0813 -3.9785 -4.1531 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3632 -0.8872 -0.5188 29 1 -0.3634 0.8927 -0.5090 30 1 1.9718 2.1212 0.0008 31 1 4.6760 2.4364 -0.0658 32 1 6.6735 -2.1866 -0.4935 33 1 8.1211 -3.4804 -3.1410 34 1 6.5412 -3.9512 -2.4696 35 1 6.6521 -3.3340 -4.1354 36 1 7.4919 2.2203 -2.9540 37 1 6.1877 1.7891 -4.0858 38 1 5.7966 2.2538 -2.4128 39 1 2.5849 -3.1071 0.4973 40 1 0.8916 -2.5584 0.5010 41 1 0.7197 -5.9678 -0.8807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288539672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:18 Heat of formation + Delta-G solvation = 75.773896 kcal Electronic energy + Delta-G solvation = -28115.651868 eV Core-core repulsion = 24161.240412 eV Total energy + Delta-G solvation = -3954.411455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18435 -40.57027 -36.96482 -35.62180 -35.31212 -34.01307 -33.36313 -31.39869 -30.80468 -30.53624 -29.46000 -26.76720 -26.38612 -25.64951 -23.15931 -21.80539 -20.70329 -20.27941 -19.92396 -18.46996 -17.49365 -17.26825 -16.74291 -16.29285 -15.62879 -15.56155 -15.34201 -14.77756 -14.51012 -14.25679 -14.13643 -13.60239 -13.30217 -13.20144 -12.76912 -12.66658 -12.57982 -12.56305 -12.25257 -12.22424 -12.05055 -11.87966 -11.75778 -11.68042 -11.55671 -11.47619 -11.27534 -10.90351 -10.86717 -10.41021 -10.33634 -9.89862 -9.70719 -9.28440 -9.01713 -8.73176 -8.12391 -7.63440 -6.34232 -4.42114 0.62583 1.76708 2.32791 2.47572 2.65763 2.96082 3.13208 3.18639 3.22298 3.35587 3.65922 4.00670 4.20442 4.36052 4.65359 4.87328 4.97454 4.97946 5.08308 5.09676 5.21193 5.28601 5.41676 5.55685 5.58614 5.73620 5.78664 5.87605 5.97555 6.10573 6.15102 6.26334 6.50717 6.55807 6.73612 6.89149 6.95758 7.14583 7.40184 7.57108 7.57645 7.79967 7.93779 8.48291 8.65206 9.24164 10.72937 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005193 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.671548 B = 5390.474829 C = 7011.116674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.107 3.893 3 C -0.309 4.309 4 C 0.288 3.712 5 N -1.016 6.016 6 S 2.727 3.273 7 O -0.963 6.963 8 O -0.944 6.944 9 C -0.806 4.806 10 C 0.207 3.793 11 N -0.360 5.360 12 C 0.094 3.906 13 N -0.297 5.297 14 C 0.156 3.844 15 C -0.088 4.088 16 N -0.315 5.315 17 N -0.313 5.313 18 C 0.258 3.742 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.429 0.571 32 H 0.193 0.807 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 9.698 -1.706 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C -0.343 4.343 4 C 0.032 3.968 5 N -0.769 5.769 6 S 2.816 3.184 7 O -0.953 6.953 8 O -0.934 6.934 9 C -0.906 4.906 10 C 0.053 3.947 11 N -0.136 5.136 12 C -0.048 4.048 13 N -0.118 5.118 14 C -0.014 4.014 15 C -0.146 4.146 16 N -0.145 5.145 17 N -0.095 5.095 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.265 0.735 32 H 0.210 0.790 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.181 7.645 -2.273 11.425 hybrid contribution -1.029 0.449 -0.875 1.423 sum 7.152 8.094 -3.148 11.250 Atomic orbital electron populations 1.20414 0.87793 1.04006 1.02740 1.20916 0.94814 0.87048 0.99788 1.20560 0.89911 0.98859 1.24921 1.18489 0.86734 0.89787 1.01773 1.52600 1.20171 1.16288 1.87818 1.00817 0.71292 0.73030 0.73257 1.93579 1.59283 1.54762 1.87663 1.93590 1.85248 1.65080 1.49447 1.31029 1.34670 1.07090 1.17813 1.22411 0.89174 0.94396 0.88713 1.48847 1.52829 1.07305 1.04620 1.22060 1.02865 0.77012 1.02821 1.77275 1.25807 0.90424 1.18265 1.21737 0.94476 0.95992 0.89196 1.20414 1.03840 0.87332 1.03036 1.77328 1.00111 1.07699 1.29388 1.48967 1.00730 1.07830 1.51928 1.19713 0.96117 0.71258 0.98860 1.21258 1.47029 0.97928 0.91290 0.91909 1.24900 0.94735 0.96065 0.97925 1.69907 1.44647 1.07041 1.31112 0.86462 0.78759 0.77788 0.83920 1.20220 1.20883 1.19911 0.90840 0.89783 0.90564 0.84294 0.73526 0.79004 0.90317 0.88382 0.88825 0.88971 0.89903 0.90433 0.92798 0.92676 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.89 36.01 0.36 -1.01 16 2 C 0.11 2.02 6.92 -82.28 -0.57 1.45 16 3 C -0.31 -5.32 10.74 -39.82 -0.43 -5.75 16 4 C 0.29 5.37 7.68 -154.54 -1.19 4.19 16 5 N -1.02 -15.25 5.87 31.39 0.18 -15.06 16 6 S 2.73 44.76 5.28 -107.50 -0.57 44.20 16 7 O -0.96 -15.84 17.85 -57.17 -1.02 -16.86 16 8 O -0.94 -18.34 17.10 -57.17 -0.98 -19.32 16 9 C -0.81 -13.51 5.93 -40.01 -0.24 -13.75 16 10 C 0.21 3.39 11.12 -17.22 -0.19 3.20 16 11 N -0.36 -5.69 4.01 -68.16 -0.27 -5.96 16 12 C 0.09 1.07 11.47 59.85 0.69 1.75 16 13 N -0.30 -5.08 12.57 33.67 0.42 -4.66 16 14 C 0.16 2.52 7.22 -82.41 -0.59 1.93 16 15 C -0.09 -1.08 10.05 36.01 0.36 -0.71 16 16 N -0.32 -6.91 11.64 31.41 0.37 -6.54 16 17 N -0.31 -6.97 3.59 -58.32 -0.21 -7.18 16 18 C 0.26 6.30 5.81 -5.19 -0.03 6.27 16 19 C -0.54 -14.05 9.39 -34.44 -0.32 -14.37 16 20 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -23.99 13.29 55.43 0.74 -23.26 16 23 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.40 7.71 -51.93 -0.40 1.00 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 31 H 0.43 4.66 8.96 -34.47 -0.31 4.35 16 32 H 0.19 2.77 8.06 -52.49 -0.42 2.35 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.84 8.00 -51.93 -0.42 0.43 16 39 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -35.03 373.44 -8.28 -43.32 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.29 Total: 5.57 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.25 Total: -15.15 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 1.23 Total: -62.67 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -2.00 Total: -36.18 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 44.76 SS G_CDS: -0.57 Total: 44.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.03 -8.28 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288539672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.091 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds