Wall clock time and date at job start Tue Mar 31 2020 22:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35249 * 126.06460 * 2 1 4 4 C 1.40433 * 107.86139 * 179.90655 * 3 2 1 5 5 N 1.39990 * 125.97564 * 180.14813 * 4 3 2 6 6 S 1.65601 * 119.99595 * 175.02704 * 5 4 3 7 7 O 1.42102 * 106.40024 * 177.99231 * 6 5 4 8 8 O 1.42097 * 106.40292 * 310.90689 * 6 5 4 9 9 C 1.76192 * 107.21907 * 64.45347 * 6 5 4 10 10 C 1.35318 * 126.03674 * 244.66417 * 9 6 5 11 11 N 1.34956 * 107.74192 * 179.87260 * 10 9 6 12 12 C 1.46502 * 126.03335 * 180.14727 * 11 10 9 13 13 N 1.40079 * 107.92520 * 0.39165 * 11 10 9 14 14 C 1.30830 * 108.20885 * 359.75494 * 13 11 10 15 15 C 1.50701 * 125.90125 * 179.97438 * 14 13 11 16 16 N 1.31221 * 108.04510 * 0.36590 * 4 3 2 17 17 N 1.34959 * 126.07365 * 180.31754 * 2 1 3 18 18 C 1.46504 * 125.96812 * 359.96029 * 17 2 1 19 19 C 1.50699 * 109.47146 * 90.00278 * 18 17 2 20 20 H 1.08001 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00057 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46920 * 60.00545 * 23 21 19 25 25 H 1.48498 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47055 * 300.00270 * 23 21 19 27 27 H 1.08999 * 109.47079 * 269.68309 * 1 2 3 28 28 H 1.09000 * 109.46658 * 149.68333 * 1 2 3 29 29 H 1.08997 * 109.47316 * 29.68866 * 1 2 3 30 30 H 1.08003 * 126.06820 * 0.05022 * 3 2 1 31 31 H 0.96997 * 120.00265 * 355.02681 * 5 4 3 32 32 H 1.07996 * 126.13022 * 0.02562 * 10 9 6 33 33 H 1.08998 * 109.47275 * 270.26032 * 12 11 10 34 34 H 1.09006 * 109.47268 * 30.26379 * 12 11 10 35 35 H 1.09000 * 109.47297 * 150.26241 * 12 11 10 36 36 H 1.08991 * 109.47550 * 264.79618 * 15 14 13 37 37 H 1.08999 * 109.47019 * 24.79850 * 15 14 13 38 38 H 1.08998 * 109.47096 * 144.79201 * 15 14 13 39 39 H 1.09002 * 109.47020 * 209.99861 * 18 17 2 40 40 H 1.08998 * 109.47393 * 330.00476 * 18 17 2 41 41 H 0.96994 * 120.00255 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6373 0.6546 0.0022 5 7 4.7724 1.4739 0.0058 6 16 6.2796 0.7997 0.1323 7 8 7.2070 1.8739 0.0594 8 8 6.2237 -0.1058 1.2260 9 6 6.5364 -0.1781 -1.3107 10 6 6.6884 -1.5223 -1.3448 11 7 6.8584 -1.8844 -2.6337 12 6 7.0559 -3.2498 -3.1265 13 7 6.8183 -0.7234 -3.4165 14 6 6.6253 0.2985 -2.6227 15 6 6.5180 1.7401 -3.0483 16 7 3.6337 -0.6576 -0.0045 17 7 2.3017 -1.0908 -0.0060 18 6 1.8500 -2.4845 -0.0129 19 6 1.6944 -2.9550 -1.4361 20 1 1.9099 -2.2831 -2.2537 21 6 1.2768 -4.2434 -1.6945 22 7 1.0138 -5.0615 -0.6989 23 14 1.0832 -4.8264 -3.4586 24 1 2.3885 -4.7251 -4.1594 25 1 0.6255 -6.2391 -3.4656 26 1 0.0813 -3.9785 -4.1531 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3632 -0.8872 -0.5188 29 1 -0.3634 0.8927 -0.5090 30 1 1.9718 2.1212 0.0008 31 1 4.6760 2.4364 -0.0658 32 1 6.6735 -2.1866 -0.4935 33 1 8.1211 -3.4804 -3.1410 34 1 6.5412 -3.9512 -2.4696 35 1 6.6521 -3.3340 -4.1354 36 1 7.4919 2.2203 -2.9540 37 1 6.1877 1.7891 -4.0858 38 1 5.7966 2.2538 -2.4128 39 1 2.5849 -3.1071 0.4973 40 1 0.8916 -2.5584 0.5010 41 1 0.7197 -5.9678 -0.8807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288539672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:17 Heat of formation + Delta-G solvation = 50.422908 kcal Electronic energy + Delta-G solvation = -28116.751169 eV Core-core repulsion = 24161.240412 eV Total energy + Delta-G solvation = -3955.510757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38259 -42.06088 -38.33385 -37.01132 -36.76708 -35.27486 -35.09117 -32.77331 -32.51607 -31.72771 -30.49918 -28.50790 -27.80435 -26.70559 -24.99204 -23.03010 -22.15908 -21.53003 -21.29857 -19.81680 -18.87139 -18.69288 -18.57767 -17.66067 -17.04944 -16.82295 -16.70296 -16.28211 -16.03728 -15.83607 -15.31070 -14.71332 -14.55104 -14.39675 -14.32094 -14.09773 -13.81524 -13.69598 -13.49571 -13.38084 -13.31584 -13.23362 -13.18696 -13.13858 -13.09429 -12.80367 -12.76812 -12.68546 -12.43003 -12.22422 -11.71690 -11.52687 -11.35343 -10.74157 -10.52109 -10.19262 -9.62359 -9.15933 -8.32678 -6.49482 -0.68149 0.52498 1.10612 1.16146 1.34663 1.35582 1.37179 1.44671 1.57984 1.95329 2.19009 2.33697 2.70679 2.96932 3.17361 3.52189 3.65191 3.70303 3.93578 3.94764 4.23218 4.26948 4.32944 4.47967 4.53419 4.66219 4.68238 4.79646 4.81789 4.85614 4.86669 4.93469 5.02339 5.14863 5.31312 5.40241 5.54097 5.74734 5.80308 5.82562 6.06151 6.29682 6.36149 6.63570 6.99694 7.21035 8.73017 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005193 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.671548 B = 5390.474829 C = 7011.116674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.094 3.906 3 C -0.299 4.299 4 C 0.290 3.710 5 N -1.000 6.000 6 S 2.745 3.255 7 O -0.962 6.962 8 O -0.977 6.977 9 C -0.821 4.821 10 C 0.191 3.809 11 N -0.364 5.364 12 C 0.083 3.917 13 N -0.322 5.322 14 C 0.149 3.851 15 C -0.094 4.094 16 N -0.358 5.358 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.546 4.546 20 H 0.047 0.953 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 0.962 3.038 24 H -0.277 1.277 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.183 0.817 31 H 0.448 0.552 32 H 0.200 0.800 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.021 0.979 40 H 0.052 0.948 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 11.434 -2.761 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.331 4.331 4 C 0.033 3.967 5 N -0.756 5.756 6 S 2.834 3.166 7 O -0.952 6.952 8 O -0.967 6.967 9 C -0.922 4.922 10 C 0.036 3.964 11 N -0.139 5.139 12 C -0.056 4.056 13 N -0.143 5.143 14 C -0.021 4.021 15 C -0.152 4.152 16 N -0.188 5.188 17 N -0.125 5.125 18 C 0.157 3.843 19 C -0.584 4.584 20 H 0.066 0.934 21 C -0.174 4.174 22 N -0.554 5.554 23 Si 0.787 3.213 24 H -0.203 1.203 25 H -0.198 1.198 26 H -0.192 1.192 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.200 0.800 31 H 0.289 0.711 32 H 0.217 0.783 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.675 9.426 -3.330 12.603 hybrid contribution -0.826 -0.025 -0.519 0.976 sum 6.849 9.401 -3.849 12.252 Atomic orbital electron populations 1.20533 0.85314 1.04562 1.04141 1.21710 0.96595 0.86416 0.98897 1.21037 0.88681 1.00384 1.23003 1.18789 0.88269 0.89346 1.00289 1.52391 1.18778 1.17152 1.87315 1.00163 0.71281 0.72494 0.72644 1.93570 1.59368 1.54599 1.87665 1.93552 1.85836 1.66136 1.51196 1.31089 1.35539 1.07401 1.18145 1.22679 0.89461 0.94867 0.89393 1.49186 1.52103 1.08271 1.04375 1.22387 1.05041 0.75343 1.02850 1.77215 1.26890 0.91093 1.19144 1.22356 0.93531 0.97426 0.88780 1.20656 1.05301 0.85229 1.04058 1.77247 1.00401 1.09707 1.31409 1.48727 1.01542 1.07618 1.54605 1.19197 0.94827 0.72722 0.97549 1.21341 1.47269 0.98138 0.91686 0.93448 1.25623 0.94179 0.95993 1.01611 1.69992 1.45087 1.07407 1.32947 0.85543 0.78651 0.77750 0.79365 1.20265 1.19847 1.19222 0.88925 0.92034 0.87105 0.79974 0.71142 0.78294 0.87319 0.87829 0.88635 0.87299 0.88681 0.89071 0.96042 0.93020 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 9.89 71.24 0.70 -1.75 16 2 C 0.09 3.44 6.92 41.39 0.29 3.73 16 3 C -0.30 -9.47 10.74 22.11 0.24 -9.23 16 4 C 0.29 10.44 7.68 133.39 1.02 11.46 16 5 N -1.00 -28.25 5.87 -54.60 -0.32 -28.57 16 6 S 2.74 88.21 5.28 -56.49 -0.30 87.91 16 7 O -0.96 -30.24 17.85 -128.00 -2.28 -32.53 16 8 O -0.98 -38.36 17.10 -128.00 -2.19 -40.55 16 9 C -0.82 -27.38 5.93 21.99 0.13 -27.25 16 10 C 0.19 6.36 11.12 83.54 0.93 7.29 16 11 N -0.36 -11.50 4.01 -369.55 -1.48 -12.98 16 12 C 0.08 1.87 11.47 127.77 1.47 3.34 16 13 N -0.32 -10.91 12.57 -47.39 -0.60 -11.50 16 14 C 0.15 4.69 7.22 43.10 0.31 5.00 16 15 C -0.09 -2.13 10.05 71.24 0.72 -1.42 16 16 N -0.36 -15.82 11.64 -54.54 -0.63 -16.45 16 17 N -0.34 -15.46 3.59 -338.44 -1.22 -16.67 16 18 C 0.28 13.98 5.81 85.63 0.50 14.48 16 19 C -0.55 -29.25 9.39 25.60 0.24 -29.01 16 20 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 21 C 0.03 1.43 5.46 84.65 0.46 1.89 16 22 N -0.92 -50.11 13.29 21.45 0.28 -49.82 16 23 Si 0.96 41.55 29.54 68.60 2.03 43.58 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.01 7.71 -2.39 -0.02 2.00 16 29 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.45 8.47 8.96 -96.75 -0.87 7.60 16 32 H 0.20 6.05 8.06 -2.91 -0.02 6.03 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 2.59 7.65 -2.39 -0.02 2.57 16 41 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -76.45 373.44 0.50 -75.95 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.20 Total: 23.10 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 7.01 Total: -21.46 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -3.97 Total: -136.00 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -4.47 Total: -73.08 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 88.21 SS G_CDS: -0.30 Total: 87.91 kcal Total: -76.45 0.50 -75.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288539672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.373 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds