Wall clock time and date at job start Tue Mar 31 2020 22:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35240 * 126.06739 * 2 1 4 4 C 1.40437 * 107.86402 * 179.90703 * 3 2 1 5 5 N 1.39986 * 125.97510 * 180.14591 * 4 3 2 6 6 S 1.65606 * 119.99592 * 174.95906 * 5 4 3 7 7 O 1.42097 * 106.39914 * 177.91301 * 6 5 4 8 8 O 1.42100 * 106.40200 * 310.83228 * 6 5 4 9 9 C 1.76194 * 107.21941 * 64.37412 * 6 5 4 10 10 C 1.39864 * 126.04099 * 244.74129 * 9 6 5 11 11 N 1.30844 * 108.20657 * 179.81454 * 10 9 6 12 12 N 1.40087 * 108.20075 * 0.43946 * 11 10 9 13 13 C 1.46493 * 126.03769 * 179.73547 * 12 11 10 14 14 C 1.34952 * 107.92554 * 359.71713 * 12 11 10 15 15 C 1.50694 * 126.12700 * 179.97438 * 14 12 11 16 16 N 1.31225 * 108.04175 * 0.36150 * 4 3 2 17 17 N 1.34958 * 126.06816 * 180.30786 * 2 1 3 18 18 C 1.46507 * 125.97608 * 359.96357 * 17 2 1 19 19 C 1.50706 * 109.46843 * 89.99926 * 18 17 2 20 20 H 1.08006 * 119.99923 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00047 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46738 * 90.00589 * 23 21 19 25 25 H 1.48494 * 109.47168 * 210.00222 * 23 21 19 26 26 H 1.48494 * 109.47182 * 330.00484 * 23 21 19 27 27 H 1.09003 * 109.46839 * 269.68407 * 1 2 3 28 28 H 1.08997 * 109.47100 * 149.69423 * 1 2 3 29 29 H 1.08990 * 109.47132 * 29.69134 * 1 2 3 30 30 H 1.08000 * 126.07122 * 0.04002 * 3 2 1 31 31 H 0.96992 * 120.00293 * 354.95350 * 5 4 3 32 32 H 1.08002 * 125.89585 * 359.97438 * 10 9 6 33 33 H 1.08998 * 109.47355 * 269.97725 * 13 12 11 34 34 H 1.09001 * 109.47297 * 29.97770 * 13 12 11 35 35 H 1.09002 * 109.47455 * 149.97498 * 13 12 11 36 36 H 1.09007 * 109.47443 * 265.05009 * 15 14 12 37 37 H 1.09006 * 109.47248 * 25.04409 * 15 14 12 38 38 H 1.08993 * 109.47382 * 145.04541 * 15 14 12 39 39 H 1.08990 * 109.47487 * 209.99504 * 18 17 2 40 40 H 1.08996 * 109.47023 * 330.00161 * 18 17 2 41 41 H 0.97006 * 119.99943 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6373 0.6545 0.0022 5 7 4.7724 1.4738 0.0058 6 16 6.2796 0.7997 0.1340 7 8 7.2071 1.8736 0.0587 8 8 6.2234 -0.1034 1.2296 9 6 6.5365 -0.1814 -1.3068 10 6 6.6919 -1.5710 -1.3392 11 7 6.8569 -1.9350 -2.5851 12 7 6.8218 -0.7856 -3.3851 13 6 6.9727 -0.7443 -4.8416 14 6 6.6240 0.2770 -2.5770 15 6 6.5199 1.7163 -3.0112 16 7 3.6336 -0.6578 -0.0045 17 7 2.3016 -1.0909 -0.0059 18 6 1.8499 -2.4846 -0.0126 19 6 1.6943 -2.9553 -1.4358 20 1 1.9107 -2.2836 -2.2534 21 6 1.2758 -4.2433 -1.6940 22 7 1.1405 -4.6543 -2.9359 23 14 0.9023 -5.4052 -0.2798 24 1 -0.5284 -5.2811 0.0981 25 1 1.1842 -6.8017 -0.6987 26 1 1.7542 -5.0565 0.8855 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8927 -0.5090 30 1 1.9720 2.1211 0.0006 31 1 4.6761 2.4361 -0.0669 32 1 6.6756 -2.2301 -0.4838 33 1 8.0264 -0.6272 -5.0946 34 1 6.5966 -1.6723 -5.2723 35 1 6.4072 0.0973 -5.2419 36 1 7.4958 2.1939 -2.9230 37 1 6.1866 1.7598 -4.0482 38 1 5.8023 2.2362 -2.3768 39 1 2.5848 -3.1071 0.4976 40 1 0.8916 -2.5584 0.5013 41 1 0.8464 -5.5607 -3.1176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292009981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:21 Heat of formation + Delta-G solvation = 83.506923 kcal Electronic energy + Delta-G solvation = -28107.106829 eV Core-core repulsion = 24153.030703 eV Total energy + Delta-G solvation = -3954.076126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23525 -40.65172 -36.99489 -35.63497 -35.38161 -33.55625 -33.23810 -32.28661 -31.45819 -31.10595 -27.39325 -27.13738 -26.81218 -26.47755 -22.78453 -21.76826 -20.73345 -20.43063 -19.92929 -18.38320 -17.35411 -17.26154 -17.13575 -16.45559 -15.80583 -15.58093 -15.36907 -14.84337 -14.63395 -14.23283 -13.99578 -13.51605 -13.41852 -13.38343 -12.85016 -12.80444 -12.64244 -12.59639 -12.57540 -12.41406 -12.12328 -12.00100 -11.90412 -11.75721 -11.67227 -11.42490 -11.35415 -10.89489 -10.70871 -10.44927 -10.08938 -9.93375 -9.65758 -9.28387 -9.00259 -8.80084 -8.18463 -7.66889 -6.28602 -4.31695 0.59028 1.61989 2.43074 2.56118 2.59124 2.90865 3.13911 3.23205 3.24901 3.30133 3.58140 3.99823 4.20682 4.31253 4.41921 4.64480 4.80832 4.93626 4.98321 5.06903 5.14332 5.21694 5.24378 5.33057 5.55094 5.61175 5.68258 5.81070 5.90466 6.02867 6.06734 6.18973 6.42063 6.47909 6.60822 6.61865 6.85705 6.99894 7.26311 7.32780 7.62740 7.75604 8.27227 8.40368 8.75301 9.26881 10.83791 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.004839 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.173807 B = 5785.508372 C = 7017.460631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.109 3.891 3 C -0.307 4.307 4 C 0.288 3.712 5 N -1.018 6.018 6 S 2.726 3.274 7 O -0.966 6.966 8 O -0.938 6.938 9 C -0.802 4.802 10 C 0.158 3.842 11 N -0.288 5.288 12 N -0.359 5.359 13 C 0.092 3.908 14 C 0.200 3.800 15 C -0.116 4.116 16 N -0.306 5.306 17 N -0.311 5.311 18 C 0.230 3.770 19 C -0.539 4.539 20 H 0.079 0.921 21 C 0.080 3.920 22 N -0.886 5.886 23 Si 0.870 3.130 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.261 1.261 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.428 0.572 32 H 0.198 0.802 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 14.277 -0.164 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C -0.340 4.340 4 C 0.032 3.968 5 N -0.771 5.771 6 S 2.814 3.186 7 O -0.956 6.956 8 O -0.928 6.928 9 C -0.902 4.902 10 C -0.032 4.032 11 N -0.106 5.106 12 N -0.137 5.137 13 C -0.049 4.049 14 C 0.065 3.935 15 C -0.174 4.174 16 N -0.136 5.136 17 N -0.092 5.092 18 C 0.111 3.889 19 C -0.578 4.578 20 H 0.097 0.903 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.696 3.304 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.264 0.736 32 H 0.214 0.786 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.916 11.812 -0.605 14.232 hybrid contribution -1.157 0.680 0.212 1.359 sum 6.759 12.493 -0.393 14.209 Atomic orbital electron populations 1.20442 0.87707 1.04305 1.02695 1.20918 0.94830 0.86890 0.99648 1.20561 0.89865 0.98867 1.24728 1.18497 0.86759 0.89788 1.01803 1.52658 1.20266 1.16252 1.87895 1.00872 0.71247 0.72895 0.73542 1.93576 1.59294 1.54950 1.87776 1.93588 1.85051 1.65025 1.49153 1.30955 1.34668 1.08844 1.15711 1.23415 0.92316 0.92014 0.95437 1.77524 1.25264 1.05447 1.02393 1.48942 1.53103 1.04177 1.07474 1.21991 1.03048 1.05306 0.74590 1.20781 0.92009 0.91471 0.89258 1.20836 1.04999 0.88132 1.03402 1.77426 0.99483 1.07705 1.28947 1.48527 1.01016 1.07118 1.52557 1.20054 0.95451 0.73624 0.99803 1.21117 1.47401 0.99061 0.90174 0.90274 1.24783 0.94443 0.97417 0.95757 1.69866 1.45615 1.18324 1.18511 0.86932 0.79403 0.81105 0.82945 1.19623 1.20492 1.18579 0.90823 0.89684 0.90347 0.84141 0.73592 0.78569 0.90269 0.88490 0.89244 0.87933 0.89716 0.89280 0.92849 0.93532 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 9.89 36.01 0.36 -1.00 16 2 C 0.11 2.02 6.92 -82.28 -0.57 1.45 16 3 C -0.31 -5.14 10.74 -39.82 -0.43 -5.57 16 4 C 0.29 5.28 7.68 -154.54 -1.19 4.09 16 5 N -1.02 -14.75 5.72 31.39 0.18 -14.57 16 6 S 2.73 44.17 5.14 -107.50 -0.55 43.62 16 7 O -0.97 -15.31 17.72 -57.17 -1.01 -16.33 16 8 O -0.94 -18.42 17.14 -57.17 -0.98 -19.40 16 9 C -0.80 -13.49 5.92 -40.01 -0.24 -13.73 16 10 C 0.16 2.91 11.70 -17.36 -0.20 2.71 16 11 N -0.29 -5.39 12.58 30.62 0.39 -5.01 16 12 N -0.36 -5.49 4.01 -63.89 -0.26 -5.74 16 13 C 0.09 0.92 11.27 59.84 0.67 1.60 16 14 C 0.20 2.92 6.93 -82.26 -0.57 2.35 16 15 C -0.12 -1.12 9.62 36.00 0.35 -0.78 16 16 N -0.31 -6.74 11.64 31.41 0.37 -6.37 16 17 N -0.31 -6.88 3.59 -58.33 -0.21 -7.09 16 18 C 0.23 5.41 4.88 -5.19 -0.03 5.38 16 19 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 20 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 23 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.43 4.35 8.95 -34.47 -0.31 4.04 16 32 H 0.20 3.41 8.06 -52.49 -0.42 2.99 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.65 6.98 -51.93 -0.36 0.29 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.61 6.95 -51.93 -0.36 0.25 16 38 H 0.09 0.80 7.75 -51.93 -0.40 0.40 16 39 H 0.05 1.30 7.20 -51.93 -0.37 0.92 16 40 H 0.05 0.99 7.07 -51.93 -0.37 0.63 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -37.88 366.48 -7.86 -45.74 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.13 Total: 6.01 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.28 Total: -16.49 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 1.24 Total: -64.06 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.99 Total: -35.73 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -0.55 Total: 43.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.88 -7.86 -45.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292009981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.247 kcal (2) G-P(sol) polarization free energy of solvation -37.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds