Wall clock time and date at job start Tue Mar 31 2020 22:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35240 * 126.06739 * 2 1 4 4 C 1.40437 * 107.86402 * 179.90703 * 3 2 1 5 5 N 1.39986 * 125.97510 * 180.14591 * 4 3 2 6 6 S 1.65606 * 119.99592 * 174.95906 * 5 4 3 7 7 O 1.42097 * 106.39914 * 177.91301 * 6 5 4 8 8 O 1.42100 * 106.40200 * 310.83228 * 6 5 4 9 9 C 1.76194 * 107.21941 * 64.37412 * 6 5 4 10 10 C 1.39864 * 126.04099 * 244.74129 * 9 6 5 11 11 N 1.30844 * 108.20657 * 179.81454 * 10 9 6 12 12 N 1.40087 * 108.20075 * 0.43946 * 11 10 9 13 13 C 1.46493 * 126.03769 * 179.73547 * 12 11 10 14 14 C 1.34952 * 107.92554 * 359.71713 * 12 11 10 15 15 C 1.50694 * 126.12700 * 179.97438 * 14 12 11 16 16 N 1.31225 * 108.04175 * 0.36150 * 4 3 2 17 17 N 1.34958 * 126.06816 * 180.30786 * 2 1 3 18 18 C 1.46507 * 125.97608 * 359.96357 * 17 2 1 19 19 C 1.50706 * 109.46843 * 89.99926 * 18 17 2 20 20 H 1.08006 * 119.99923 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00047 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46738 * 90.00589 * 23 21 19 25 25 H 1.48494 * 109.47168 * 210.00222 * 23 21 19 26 26 H 1.48494 * 109.47182 * 330.00484 * 23 21 19 27 27 H 1.09003 * 109.46839 * 269.68407 * 1 2 3 28 28 H 1.08997 * 109.47100 * 149.69423 * 1 2 3 29 29 H 1.08990 * 109.47132 * 29.69134 * 1 2 3 30 30 H 1.08000 * 126.07122 * 0.04002 * 3 2 1 31 31 H 0.96992 * 120.00293 * 354.95350 * 5 4 3 32 32 H 1.08002 * 125.89585 * 359.97438 * 10 9 6 33 33 H 1.08998 * 109.47355 * 269.97725 * 13 12 11 34 34 H 1.09001 * 109.47297 * 29.97770 * 13 12 11 35 35 H 1.09002 * 109.47455 * 149.97498 * 13 12 11 36 36 H 1.09007 * 109.47443 * 265.05009 * 15 14 12 37 37 H 1.09006 * 109.47248 * 25.04409 * 15 14 12 38 38 H 1.08993 * 109.47382 * 145.04541 * 15 14 12 39 39 H 1.08990 * 109.47487 * 209.99504 * 18 17 2 40 40 H 1.08996 * 109.47023 * 330.00161 * 18 17 2 41 41 H 0.97006 * 119.99943 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6373 0.6545 0.0022 5 7 4.7724 1.4738 0.0058 6 16 6.2796 0.7997 0.1340 7 8 7.2071 1.8736 0.0587 8 8 6.2234 -0.1034 1.2296 9 6 6.5365 -0.1814 -1.3068 10 6 6.6919 -1.5710 -1.3392 11 7 6.8569 -1.9350 -2.5851 12 7 6.8218 -0.7856 -3.3851 13 6 6.9727 -0.7443 -4.8416 14 6 6.6240 0.2770 -2.5770 15 6 6.5199 1.7163 -3.0112 16 7 3.6336 -0.6578 -0.0045 17 7 2.3016 -1.0909 -0.0059 18 6 1.8499 -2.4846 -0.0126 19 6 1.6943 -2.9553 -1.4358 20 1 1.9107 -2.2836 -2.2534 21 6 1.2758 -4.2433 -1.6940 22 7 1.1405 -4.6543 -2.9359 23 14 0.9023 -5.4052 -0.2798 24 1 -0.5284 -5.2811 0.0981 25 1 1.1842 -6.8017 -0.6987 26 1 1.7542 -5.0565 0.8855 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8927 -0.5090 30 1 1.9720 2.1211 0.0006 31 1 4.6761 2.4361 -0.0669 32 1 6.6756 -2.2301 -0.4838 33 1 8.0264 -0.6272 -5.0946 34 1 6.5966 -1.6723 -5.2723 35 1 6.4072 0.0973 -5.2419 36 1 7.4958 2.1939 -2.9230 37 1 6.1866 1.7598 -4.0482 38 1 5.8023 2.2362 -2.3768 39 1 2.5848 -3.1071 0.4976 40 1 0.8916 -2.5584 0.5013 41 1 0.8464 -5.5607 -3.1176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292009981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:20 Heat of formation + Delta-G solvation = 53.521366 kcal Electronic energy + Delta-G solvation = -28108.407101 eV Core-core repulsion = 24153.030703 eV Total energy + Delta-G solvation = -3955.376397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.43646 -42.10473 -38.33835 -37.00725 -36.80369 -35.18571 -34.65950 -33.33663 -32.89167 -32.77041 -28.90646 -28.43966 -27.82406 -27.77179 -24.61582 -23.06174 -22.16821 -21.60836 -21.28774 -19.73349 -19.22929 -18.68770 -18.49929 -17.76928 -17.05248 -16.85937 -16.70063 -16.41383 -16.07881 -15.65192 -15.42588 -14.95274 -14.48656 -14.40816 -14.23177 -14.11757 -13.87177 -13.78813 -13.70485 -13.54753 -13.44590 -13.28102 -13.26780 -13.21923 -13.11042 -12.79761 -12.62905 -12.56635 -12.40652 -11.90591 -11.79697 -11.62077 -11.35997 -10.89291 -10.47114 -10.22567 -9.65038 -9.14577 -8.41358 -6.50557 -0.69239 0.49124 1.13465 1.17254 1.31843 1.34604 1.40499 1.45065 1.55591 1.93399 2.17951 2.25371 2.71171 2.91784 3.23467 3.39259 3.57402 3.68128 3.85435 3.94735 4.19124 4.26346 4.31381 4.43656 4.50026 4.56035 4.58377 4.61286 4.76011 4.77944 4.86440 4.88813 4.96310 5.12208 5.23391 5.28308 5.30110 5.75480 5.83065 5.95776 6.06062 6.35146 6.39210 6.52395 6.95250 7.13086 8.74996 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.004839 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.173807 B = 5785.508372 C = 7017.460631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 C -0.296 4.296 4 C 0.291 3.709 5 N -0.999 5.999 6 S 2.745 3.255 7 O -0.960 6.960 8 O -0.977 6.977 9 C -0.826 4.826 10 C 0.136 3.864 11 N -0.330 5.330 12 N -0.363 5.363 13 C 0.078 3.922 14 C 0.206 3.794 15 C -0.122 4.122 16 N -0.357 5.357 17 N -0.343 5.343 18 C 0.240 3.760 19 C -0.541 4.541 20 H 0.025 0.975 21 C 0.023 3.977 22 N -0.936 5.936 23 Si 0.942 3.058 24 H -0.245 1.245 25 H -0.281 1.281 26 H -0.250 1.250 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.449 0.551 32 H 0.188 0.812 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 17.002 0.366 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 C -0.328 4.328 4 C 0.033 3.967 5 N -0.756 5.756 6 S 2.834 3.166 7 O -0.950 6.950 8 O -0.967 6.967 9 C -0.926 4.926 10 C -0.053 4.053 11 N -0.149 5.149 12 N -0.141 5.141 13 C -0.061 4.061 14 C 0.070 3.930 15 C -0.180 4.180 16 N -0.187 5.187 17 N -0.125 5.125 18 C 0.120 3.880 19 C -0.579 4.579 20 H 0.044 0.956 21 C -0.176 4.176 22 N -0.575 5.575 23 Si 0.764 3.236 24 H -0.169 1.169 25 H -0.207 1.207 26 H -0.173 1.173 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.203 0.797 31 H 0.290 0.710 32 H 0.205 0.795 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.962 14.603 -0.077 16.178 hybrid contribution -0.784 -0.006 -0.102 0.790 sum 6.178 14.597 -0.179 15.852 Atomic orbital electron populations 1.20586 0.85033 1.04694 1.04524 1.21765 0.96707 0.86252 0.98597 1.21059 0.88527 1.00475 1.22786 1.18810 0.88382 0.89267 1.00197 1.52409 1.18735 1.17140 1.87341 1.00163 0.71328 0.72309 0.72778 1.93569 1.59263 1.54520 1.87687 1.93540 1.85751 1.66277 1.51168 1.31015 1.36410 1.08114 1.17094 1.23453 0.93192 0.93246 0.95457 1.77387 1.26556 1.08032 1.02937 1.49287 1.52365 1.03420 1.08999 1.22451 1.05556 1.06219 0.71848 1.21539 0.89701 0.93379 0.88399 1.21178 1.06734 0.84640 1.05418 1.77349 1.00118 1.09994 1.31199 1.48368 1.01717 1.07150 1.55283 1.19729 0.96198 0.75090 0.96976 1.21185 1.47069 0.98602 0.91032 0.95638 1.25745 0.93985 0.99208 0.98691 1.70022 1.47210 1.19072 1.21200 0.85798 0.80654 0.77878 0.79293 1.16899 1.20682 1.17335 0.88116 0.91980 0.87241 0.79671 0.71037 0.79497 0.87439 0.89615 0.85870 0.85636 0.86626 0.88332 0.94195 0.90797 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.89 71.24 0.70 -1.68 16 2 C 0.10 3.43 6.92 41.39 0.29 3.71 16 3 C -0.30 -9.08 10.74 22.11 0.24 -8.85 16 4 C 0.29 10.31 7.68 133.39 1.02 11.34 16 5 N -1.00 -27.19 5.72 -54.60 -0.31 -27.51 16 6 S 2.74 87.87 5.14 -56.49 -0.29 87.58 16 7 O -0.96 -28.89 17.72 -128.00 -2.27 -31.16 16 8 O -0.98 -39.40 17.14 -128.00 -2.19 -41.59 16 9 C -0.83 -28.23 5.92 21.99 0.13 -28.10 16 10 C 0.14 5.35 11.70 85.23 1.00 6.35 16 11 N -0.33 -13.03 12.58 -57.02 -0.72 -13.75 16 12 N -0.36 -11.04 4.01 -356.05 -1.43 -12.47 16 13 C 0.08 1.48 11.27 127.77 1.44 2.92 16 14 C 0.21 5.81 6.93 41.40 0.29 6.10 16 15 C -0.12 -1.97 9.62 71.23 0.69 -1.29 16 16 N -0.36 -15.97 11.64 -54.54 -0.63 -16.61 16 17 N -0.34 -15.29 3.59 -338.44 -1.22 -16.50 16 18 C 0.24 11.49 4.88 85.63 0.42 11.91 16 19 C -0.54 -30.84 9.94 25.60 0.25 -30.59 16 20 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 21 C 0.02 1.32 5.47 84.66 0.46 1.79 16 22 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 23 Si 0.94 41.65 27.47 68.60 1.88 43.53 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 1.94 7.71 -2.39 -0.02 1.92 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.45 7.71 8.95 -96.75 -0.87 6.84 16 32 H 0.19 7.28 8.06 -2.91 -0.02 7.26 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.12 1.44 6.98 -2.39 -0.02 1.43 16 36 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.12 1.16 6.95 -2.38 -0.02 1.14 16 38 H 0.10 1.42 7.75 -2.39 -0.02 1.41 16 39 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 40 H 0.07 3.09 7.07 -2.39 -0.02 3.07 16 41 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -88.51 366.48 0.21 -88.30 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.16 Total: 23.37 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 6.93 Total: -26.41 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -4.01 Total: -143.64 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -4.46 Total: -72.75 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Atomic # 16 Polarization: 87.87 SS G_CDS: -0.29 Total: 87.58 kcal Total: -88.51 0.21 -88.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292009981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.823 kcal (2) G-P(sol) polarization free energy of solvation -88.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds