Wall clock time and date at job start Tue Mar 31 2020 22:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47163 * 270.00088 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99749 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00008 * 3 2 1 7 7 C 1.37880 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99616 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99919 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97289 * 125.00063 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73680 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40079 * 125.97557 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00161 * 359.97438 * 14 13 12 16 16 O 1.21561 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.47827 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.39594 * 120.53261 * 359.72589 * 17 15 14 19 19 N 1.31659 * 120.70686 * 179.71933 * 18 17 15 20 20 C 1.31896 * 121.95368 * 0.54768 * 19 18 17 21 21 C 1.38901 * 120.99073 * 359.74152 * 20 19 18 22 22 N 1.40292 * 120.41159 * 180.02562 * 21 20 19 23 23 C 1.36111 * 125.93771 * 359.68864 * 22 21 20 24 24 C 1.35379 * 106.04821 * 179.90771 * 23 22 21 25 25 N 1.33780 * 106.53552 * 0.35527 * 24 23 22 26 26 N 1.28610 * 109.05608 * 359.76917 * 25 24 23 27 27 C 1.38979 * 119.17444 * 359.97438 * 21 20 19 28 28 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47248 * 60.00599 * 9 7 2 31 31 H 1.08992 * 109.47326 * 300.00216 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06670 * 180.28528 * 12 11 10 34 34 H 0.96998 * 119.99788 * 180.02562 * 14 13 12 35 35 H 1.07999 * 119.64204 * 359.97255 * 18 17 15 36 36 H 1.08002 * 119.50564 * 179.72048 * 20 19 18 37 37 H 1.08000 * 126.97714 * 0.02562 * 23 22 21 38 38 H 1.07989 * 126.73358 * 180.12486 * 24 23 22 39 39 H 1.07999 * 120.88464 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 4.8546 -3.1139 -0.8949 12 6 5.0605 -4.4044 -0.5469 13 6 4.2977 -4.6678 0.6023 14 7 4.2302 -5.8903 1.2828 15 6 4.9399 -6.9476 0.8411 16 8 5.6390 -6.8401 -0.1475 17 6 4.8691 -8.2375 1.5597 18 6 4.0752 -8.3714 2.7001 19 7 4.0052 -9.5202 3.3395 20 6 4.6814 -10.5814 2.9441 21 6 5.4991 -10.5314 1.8225 22 7 6.2124 -11.6678 1.4125 23 6 6.1998 -12.8831 2.0253 24 6 7.0205 -13.6773 1.2984 25 7 7.4934 -12.9234 0.2996 26 7 6.9970 -11.7408 0.3947 27 6 5.6010 -9.3421 1.1108 28 7 3.6593 -3.5683 0.9273 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8745 -0.6807 -0.8904 32 1 5.2992 -2.6036 -1.7365 33 1 5.6986 -5.1077 -1.0614 34 1 3.6721 -5.9762 2.0715 35 1 3.5092 -7.5247 3.0592 36 1 4.5982 -11.5030 3.5011 37 1 5.6459 -13.1585 2.9106 38 1 7.2513 -14.7148 1.4896 39 1 6.2290 -9.2722 0.2349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338524887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:47 Heat of formation + Delta-G solvation = 212.528420 kcal Electronic energy + Delta-G solvation = -26707.967718 eV Core-core repulsion = 22656.335184 eV Total energy + Delta-G solvation = -4051.632534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.98101 -41.39906 -40.64732 -39.20973 -35.77692 -35.06850 -33.53036 -33.09965 -31.68609 -31.48750 -30.76261 -29.53113 -27.40280 -25.75572 -25.34593 -23.51806 -22.59528 -22.37096 -21.70876 -20.54094 -19.98302 -19.12753 -17.78971 -17.44077 -17.23576 -17.09428 -16.95340 -16.29013 -15.62232 -15.59771 -15.45627 -14.92090 -14.64344 -14.47465 -14.26349 -13.91195 -13.68053 -13.38302 -13.11749 -12.61414 -12.42471 -12.30904 -12.26071 -12.03364 -11.63176 -11.28205 -10.90945 -10.79570 -10.68040 -10.49206 -10.19537 -10.09136 -10.02320 -9.87903 -9.60729 -9.54131 -8.81422 -8.34052 -7.67824 -6.28201 -4.31119 -0.36781 0.10038 1.28249 1.52973 2.02827 2.16514 2.38886 2.68003 3.06416 3.11962 3.18694 3.20360 3.41855 3.50882 3.57474 3.65545 3.86337 3.98434 4.08892 4.18591 4.24169 4.43460 4.52395 4.62016 4.85464 4.99100 5.20619 5.28077 5.34640 5.44420 5.56817 5.58434 5.98004 6.05998 6.26112 6.31591 6.40706 6.57999 6.94963 7.11126 7.17723 7.37519 7.70163 7.88226 7.89247 8.26510 8.41548 8.80699 9.26341 10.84335 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.001893 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.352298 B =14786.494793 C =15432.250900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.256 3.744 14 N -0.620 5.620 15 C 0.569 3.431 16 O -0.500 6.500 17 C -0.154 4.154 18 C 0.145 3.855 19 N -0.456 5.456 20 C 0.133 3.867 21 C 0.064 3.936 22 N -0.242 5.242 23 C -0.048 4.048 24 C -0.040 4.040 25 N -0.257 5.257 26 N -0.072 5.072 27 C 0.004 3.996 28 N -0.291 5.291 29 H 0.269 0.731 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.412 0.588 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.198 0.802 38 H 0.198 0.802 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.473 -23.692 7.408 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.003 3.997 14 N -0.267 5.267 15 C 0.354 3.646 16 O -0.374 6.374 17 C -0.161 4.161 18 C -0.014 4.014 19 N -0.163 5.163 20 C -0.027 4.027 21 C -0.030 4.030 22 N -0.030 5.030 23 C -0.196 4.196 24 C -0.195 4.195 25 N -0.124 5.124 26 N -0.051 5.051 27 C -0.024 4.024 28 N -0.122 5.122 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.248 0.752 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.215 0.785 38 H 0.215 0.785 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.066 -22.168 7.042 25.758 hybrid contribution 0.448 0.021 0.083 0.456 sum 11.513 -22.147 7.125 25.958 Atomic orbital electron populations 1.69865 1.06160 1.27370 1.48929 1.24831 0.94875 0.98812 0.94198 0.86910 0.80424 0.83828 0.78954 1.19687 1.20491 1.18864 1.21088 0.87697 0.95738 1.52940 0.89613 1.20091 0.97549 0.72796 0.98340 1.48662 1.32230 1.10237 1.18563 1.22585 0.95767 0.94604 0.96622 1.21547 1.11310 0.97004 1.01438 1.18984 0.99450 0.86381 0.94869 1.42177 1.46536 1.07653 1.30342 1.17642 0.80223 0.82444 0.84287 1.90776 1.38833 1.82922 1.24825 1.20817 1.01555 0.95006 0.98676 1.23341 0.92897 0.95730 0.89403 1.67899 1.19655 0.98866 1.29902 1.22904 0.89999 0.98523 0.91279 1.18611 0.99285 0.86035 0.99115 1.44629 1.30224 1.08729 1.19416 1.23914 1.06887 0.84884 1.03900 1.23737 0.99483 1.02150 0.94170 1.75191 1.19625 0.97032 1.20554 1.78502 1.05292 1.16214 1.05097 1.21555 0.94308 0.88377 0.98146 1.77405 1.23206 0.95517 1.16041 0.92121 0.93889 0.93206 0.81166 0.81990 0.75157 0.80699 0.80983 0.78488 0.78494 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 7 C -0.54 -14.72 9.79 -34.44 -0.34 -15.06 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.23 5.27 5.33 -5.19 -0.03 5.25 16 10 N -0.32 -6.80 3.67 -62.56 -0.23 -7.03 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.13 9.60 -39.83 -0.38 -5.51 16 13 C 0.26 4.72 8.11 -154.45 -1.25 3.47 16 14 N -0.62 -8.45 5.40 -12.00 -0.06 -8.52 16 15 C 0.57 7.32 7.75 -12.34 -0.10 7.22 16 16 O -0.50 -7.93 13.54 5.31 0.07 -7.86 16 17 C -0.15 -1.46 5.89 -104.85 -0.62 -2.07 16 18 C 0.14 1.09 10.71 -17.12 -0.18 0.91 16 19 N -0.46 -3.38 10.34 -12.77 -0.13 -3.52 16 20 C 0.13 0.79 10.62 -17.28 -0.18 0.60 16 21 C 0.06 0.50 6.70 -83.46 -0.56 -0.06 16 22 N -0.24 -2.04 3.56 -10.40 -0.04 -2.07 16 23 C -0.05 -0.25 10.93 -16.67 -0.18 -0.44 16 24 C -0.04 -0.26 12.05 -17.72 -0.21 -0.47 16 25 N -0.26 -2.79 12.40 30.24 0.37 -2.41 16 26 N -0.07 -0.82 12.48 60.35 0.75 -0.07 16 27 C 0.00 0.04 9.27 -38.68 -0.36 -0.32 16 28 N -0.29 -6.27 12.42 31.43 0.39 -5.88 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 31 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 32 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 33 H 0.16 2.84 5.91 -52.48 -0.31 2.53 16 34 H 0.41 4.29 6.88 -40.82 -0.28 4.01 16 35 H 0.18 0.92 6.42 -52.49 -0.34 0.58 16 36 H 0.17 0.38 6.77 -52.49 -0.36 0.02 16 37 H 0.20 0.10 7.12 -52.49 -0.37 -0.28 16 38 H 0.20 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.17 1.79 7.45 -52.49 -0.39 1.40 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -36.50 347.36 -5.47 -41.97 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.25 Total: 4.14 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.69 Total: -3.69 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 1.83 Total: -54.77 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.50 -5.47 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338524887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.496 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds