Wall clock time and date at job start Tue Mar 31 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47163 * 270.00088 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99749 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00008 * 3 2 1 7 7 C 1.37880 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99616 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99919 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97289 * 125.00063 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73680 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40079 * 125.97557 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00161 * 359.97438 * 14 13 12 16 16 O 1.21561 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.47827 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.39594 * 120.53261 * 359.72589 * 17 15 14 19 19 N 1.31659 * 120.70686 * 179.71933 * 18 17 15 20 20 C 1.31896 * 121.95368 * 0.54768 * 19 18 17 21 21 C 1.38901 * 120.99073 * 359.74152 * 20 19 18 22 22 N 1.40292 * 120.41159 * 180.02562 * 21 20 19 23 23 C 1.36111 * 125.93771 * 359.68864 * 22 21 20 24 24 C 1.35379 * 106.04821 * 179.90771 * 23 22 21 25 25 N 1.33780 * 106.53552 * 0.35527 * 24 23 22 26 26 N 1.28610 * 109.05608 * 359.76917 * 25 24 23 27 27 C 1.38979 * 119.17444 * 359.97438 * 21 20 19 28 28 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47248 * 60.00599 * 9 7 2 31 31 H 1.08992 * 109.47326 * 300.00216 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06670 * 180.28528 * 12 11 10 34 34 H 0.96998 * 119.99788 * 180.02562 * 14 13 12 35 35 H 1.07999 * 119.64204 * 359.97255 * 18 17 15 36 36 H 1.08002 * 119.50564 * 179.72048 * 20 19 18 37 37 H 1.08000 * 126.97714 * 0.02562 * 23 22 21 38 38 H 1.07989 * 126.73358 * 180.12486 * 24 23 22 39 39 H 1.07999 * 120.88464 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 4.8546 -3.1139 -0.8949 12 6 5.0605 -4.4044 -0.5469 13 6 4.2977 -4.6678 0.6023 14 7 4.2302 -5.8903 1.2828 15 6 4.9399 -6.9476 0.8411 16 8 5.6390 -6.8401 -0.1475 17 6 4.8691 -8.2375 1.5597 18 6 4.0752 -8.3714 2.7001 19 7 4.0052 -9.5202 3.3395 20 6 4.6814 -10.5814 2.9441 21 6 5.4991 -10.5314 1.8225 22 7 6.2124 -11.6678 1.4125 23 6 6.1998 -12.8831 2.0253 24 6 7.0205 -13.6773 1.2984 25 7 7.4934 -12.9234 0.2996 26 7 6.9970 -11.7408 0.3947 27 6 5.6010 -9.3421 1.1108 28 7 3.6593 -3.5683 0.9273 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8745 -0.6807 -0.8904 32 1 5.2992 -2.6036 -1.7365 33 1 5.6986 -5.1077 -1.0614 34 1 3.6721 -5.9762 2.0715 35 1 3.5092 -7.5247 3.0592 36 1 4.5982 -11.5030 3.5011 37 1 5.6459 -13.1585 2.9106 38 1 7.2513 -14.7148 1.4896 39 1 6.2290 -9.2722 0.2349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338524887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:46 Heat of formation + Delta-G solvation = 185.152744 kcal Electronic energy + Delta-G solvation = -26709.154817 eV Core-core repulsion = 22656.335184 eV Total energy + Delta-G solvation = -4052.819633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.54232 -42.45406 -41.73774 -40.28914 -36.55886 -36.21035 -35.26442 -34.00821 -33.07376 -32.18985 -31.54843 -30.99764 -29.08299 -26.59980 -26.02269 -24.65093 -23.88191 -22.98875 -22.76263 -21.86175 -21.20430 -19.93967 -19.11967 -18.51332 -18.26926 -18.12075 -17.68376 -17.43633 -16.83121 -16.73916 -16.21336 -16.04252 -15.76628 -15.45207 -15.15998 -15.00251 -14.84685 -14.57865 -14.37997 -13.95876 -13.90606 -13.73489 -13.02676 -12.85752 -12.65546 -12.55025 -12.37194 -12.20822 -11.86015 -11.75330 -11.60211 -11.40742 -11.21717 -10.88350 -10.86540 -10.52859 -10.14596 -9.82858 -9.17750 -8.37109 -6.47407 -0.96616 -0.59425 0.71909 0.95295 0.98258 1.21094 1.37336 1.40863 1.44207 1.49956 1.50775 2.08272 2.17005 2.29249 2.48126 2.90106 2.95581 3.06081 3.19676 3.42079 3.48321 3.53785 3.79208 3.96649 4.15035 4.18016 4.19238 4.35705 4.56134 4.58937 4.68537 4.75094 4.83257 4.86307 4.88982 5.06487 5.17536 5.24402 5.54383 5.79126 5.98213 6.07035 6.36471 6.38145 6.58209 6.77365 6.96612 7.15514 7.31575 8.79729 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.001893 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.352298 B =14786.494793 C =15432.250900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.547 4.547 8 H 0.028 0.972 9 C 0.238 3.762 10 N -0.341 5.341 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.614 5.614 15 C 0.574 3.426 16 O -0.534 6.534 17 C -0.165 4.165 18 C 0.158 3.842 19 N -0.463 5.463 20 C 0.159 3.841 21 C 0.058 3.942 22 N -0.247 5.247 23 C -0.027 4.027 24 C -0.050 4.050 25 N -0.297 5.297 26 N -0.127 5.127 27 C -0.005 4.005 28 N -0.339 5.339 29 H 0.272 0.728 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.211 0.789 33 H 0.168 0.832 34 H 0.426 0.574 35 H 0.195 0.805 36 H 0.220 0.780 37 H 0.252 0.748 38 H 0.232 0.768 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 -24.751 9.149 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.119 3.881 10 N -0.123 5.123 11 C -0.086 4.086 12 C -0.325 4.325 13 C 0.009 3.991 14 N -0.263 5.263 15 C 0.361 3.639 16 O -0.410 6.410 17 C -0.171 4.171 18 C 0.000 4.000 19 N -0.170 5.170 20 C -0.001 4.001 21 C -0.036 4.036 22 N -0.035 5.035 23 C -0.174 4.174 24 C -0.206 4.206 25 N -0.163 5.163 26 N -0.105 5.105 27 C -0.033 4.033 28 N -0.170 5.170 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.228 0.772 33 H 0.186 0.814 34 H 0.265 0.735 35 H 0.212 0.788 36 H 0.236 0.764 37 H 0.268 0.732 38 H 0.248 0.752 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.220 -23.260 8.784 27.704 hybrid contribution 0.064 0.035 -0.394 0.401 sum 12.284 -23.224 8.389 27.579 Atomic orbital electron populations 1.70043 1.08542 1.28784 1.50620 1.25903 0.95752 1.03487 0.93262 0.85636 0.79556 0.77322 0.79986 1.17915 1.20702 1.16156 1.21224 0.90452 0.93774 1.53045 0.95348 1.19920 0.94212 0.74241 0.99763 1.48539 1.33827 1.10070 1.19886 1.23259 0.94193 0.94617 0.96490 1.21765 1.11694 0.97387 1.01683 1.19333 0.97900 0.87048 0.94782 1.42257 1.47030 1.06389 1.30642 1.18148 0.78888 0.83047 0.83775 1.90746 1.40195 1.83570 1.26466 1.20415 1.03721 0.93144 0.99818 1.23606 0.91694 0.96631 0.88113 1.68060 1.20114 0.99034 1.29812 1.23619 0.87261 0.99461 0.89797 1.18707 0.99868 0.85406 0.99617 1.44760 1.29819 1.09704 1.19252 1.24825 1.05491 0.82930 1.04188 1.24462 0.99302 1.03582 0.93205 1.75124 1.20816 0.97682 1.22631 1.78491 1.07694 1.16972 1.07339 1.21460 0.94266 0.89520 0.98022 1.77320 1.25311 0.96682 1.17648 0.91900 0.93446 0.90054 0.77212 0.81445 0.73478 0.78798 0.76354 0.73205 0.75179 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 2 C 0.01 0.83 5.47 84.66 0.46 1.29 16 3 Si 0.95 39.94 27.47 68.60 1.88 41.82 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.24 -8.95 6.54 99.48 0.65 -8.30 16 7 C -0.55 -30.87 9.79 25.60 0.25 -30.62 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.24 10.70 5.33 85.63 0.46 11.16 16 10 N -0.34 -14.75 3.67 -351.84 -1.29 -16.04 16 11 C 0.06 2.22 11.43 83.52 0.96 3.18 16 12 C -0.29 -10.76 9.60 22.11 0.21 -10.54 16 13 C 0.26 9.91 8.11 133.35 1.08 10.99 16 14 N -0.61 -16.98 5.40 -310.14 -1.67 -18.66 16 15 C 0.57 15.09 7.75 86.78 0.67 15.76 16 16 O -0.53 -17.62 13.54 -3.91 -0.05 -17.67 16 17 C -0.16 -3.07 5.89 -20.01 -0.12 -3.19 16 18 C 0.16 2.09 10.71 85.05 0.91 3.01 16 19 N -0.46 -5.40 10.34 -194.30 -2.01 -7.41 16 20 C 0.16 1.27 10.62 84.84 0.90 2.17 16 21 C 0.06 0.81 6.70 38.12 0.26 1.06 16 22 N -0.25 -3.78 3.56 -186.83 -0.66 -4.45 16 23 C -0.03 -0.19 10.93 83.37 0.91 0.73 16 24 C -0.05 -0.53 12.05 83.74 1.01 0.48 16 25 N -0.30 -6.43 12.40 -58.24 -0.72 -7.15 16 26 N -0.13 -2.96 12.48 37.02 0.46 -2.50 16 27 C 0.00 -0.09 9.27 22.85 0.21 0.13 16 28 N -0.34 -15.00 12.42 -54.48 -0.68 -15.68 16 29 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.05 2.08 7.20 -2.38 -0.02 2.06 16 31 H 0.08 3.14 7.50 -2.39 -0.02 3.12 16 32 H 0.21 5.44 8.06 -2.91 -0.02 5.42 16 33 H 0.17 5.94 5.91 -2.91 -0.02 5.92 16 34 H 0.43 8.86 6.88 -92.71 -0.64 8.23 16 35 H 0.20 1.68 6.42 -2.91 -0.02 1.66 16 36 H 0.22 -0.42 6.77 -2.91 -0.02 -0.44 16 37 H 0.25 -1.38 7.12 -2.91 -0.02 -1.40 16 38 H 0.23 0.48 8.06 -2.92 -0.02 0.45 16 39 H 0.15 3.47 7.45 -2.91 -0.02 3.45 16 Total: -1.00 -87.05 347.36 4.18 -82.87 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.45 Total: 16.13 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 8.17 Total: 5.59 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -6.28 Total: -128.74 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.88 Total: 41.82 kcal Total: -87.05 4.18 -82.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338524887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.021 kcal (2) G-P(sol) polarization free energy of solvation -87.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds