Wall clock time and date at job start Tue Mar 31 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48506 * 109.47347 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47653 * 119.99702 * 3 2 1 7 7 C 1.38946 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99746 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99744 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00121 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99910 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.50608 * 300.08665 * 16 14 13 18 18 C 1.53092 * 109.54073 * 60.19631 * 16 14 13 19 19 O 1.43021 * 109.25905 * 176.80576 * 18 16 14 20 20 C 1.43020 * 113.73351 * 301.32858 * 19 18 16 21 21 C 1.53097 * 109.25585 * 58.67346 * 20 19 18 22 22 N 1.47013 * 109.50312 * 180.02562 * 16 14 13 23 23 C 1.46896 * 111.00213 * 57.63306 * 22 16 14 24 24 C 1.52997 * 109.47246 * 164.56480 * 23 22 16 25 25 F 1.39894 * 109.47312 * 52.56940 * 24 23 22 26 26 F 1.39904 * 109.46864 * 292.57112 * 24 23 22 27 27 F 1.39901 * 109.47218 * 172.57509 * 24 23 22 28 28 H 0.96993 * 120.00146 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99938 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46871 * 60.00262 * 12 10 9 31 31 H 1.08996 * 109.47606 * 300.00220 * 12 10 9 32 32 H 0.97002 * 119.99501 * 0.02562 * 13 12 10 33 33 H 1.08999 * 109.50926 * 296.73393 * 18 16 14 34 34 H 1.08994 * 109.51231 * 56.82577 * 18 16 14 35 35 H 1.09006 * 109.50216 * 178.60375 * 20 19 18 36 36 H 1.08991 * 109.50676 * 298.68813 * 20 19 18 37 37 H 1.09000 * 109.50367 * 183.21865 * 21 20 19 38 38 H 1.08990 * 109.51414 * 63.08480 * 21 20 19 39 39 H 1.08997 * 109.47133 * 44.55628 * 23 22 16 40 40 H 1.09006 * 109.47058 * 284.56455 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1960 -5.9764 0.0016 14 6 1.7468 -7.2472 0.0017 15 8 0.5545 -7.4688 0.0008 16 6 2.7262 -8.3925 0.0016 17 1 3.3541 -8.3344 -0.8875 18 6 3.6041 -8.3157 1.2534 19 8 4.4803 -9.4456 1.2853 20 6 3.7984 -10.7028 1.2869 21 6 2.9226 -10.8038 0.0353 22 7 1.9919 -9.6662 0.0010 23 6 1.0933 -9.7553 -1.1575 24 6 0.6449 -11.2060 -1.3448 25 9 0.1228 -11.6919 -0.1413 26 9 1.7409 -11.9872 -1.7268 27 9 -0.3388 -11.2656 -2.3378 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 0.0005 30 1 0.6170 -4.9209 -0.8886 31 1 0.6176 -4.9206 0.8913 32 1 3.1497 -5.7991 0.0019 33 1 4.1933 -7.3990 1.2291 34 1 2.9725 -8.3189 2.1418 35 1 4.5282 -11.5126 1.2867 36 1 3.1732 -10.7766 2.1765 37 1 2.3574 -11.7355 0.0608 38 1 3.5535 -10.7843 -0.8532 39 1 1.6184 -9.4189 -2.0514 40 1 0.2205 -9.1240 -0.9898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343508101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:10 Heat of formation + Delta-G solvation = -245.717393 kcal Electronic energy + Delta-G solvation = -30318.589446 eV Core-core repulsion = 25333.334720 eV Total energy + Delta-G solvation = -4985.254726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.47700 -47.99481 -47.79035 -40.78253 -39.03730 -38.12552 -36.23575 -34.59292 -33.84955 -32.00824 -31.42500 -30.54561 -27.93461 -26.34634 -25.23656 -24.31820 -23.10695 -21.60320 -20.26650 -19.69985 -18.96404 -18.82091 -18.19723 -17.86812 -17.42552 -16.64275 -16.39123 -15.84443 -15.74866 -15.53495 -15.16615 -15.05467 -14.83634 -14.74693 -14.52388 -14.44333 -14.24365 -14.14473 -14.07796 -13.98868 -13.84117 -13.64374 -12.78035 -12.69519 -12.47509 -12.29533 -12.09367 -12.01196 -11.68738 -11.55618 -11.15234 -10.98618 -10.55430 -10.37911 -10.26913 -9.71576 -9.69169 -9.06876 -8.86981 -8.72799 -8.17294 -6.57711 -4.00165 2.38661 2.47060 2.76808 3.09219 3.13906 3.18266 3.22529 3.47214 3.56060 3.65580 3.78329 4.04476 4.07814 4.37130 4.47253 4.60933 4.67381 4.76491 4.77985 4.88434 4.90646 5.10493 5.19511 5.33121 5.35236 5.43060 5.55654 5.76312 5.83107 5.96338 6.11557 6.29279 6.46799 6.72388 7.39915 7.54810 7.84275 8.17228 8.37430 8.97811 9.31470 9.78773 10.58895 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002377 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.964014 B =11776.886565 C =12750.034452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.425 3.575 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.701 5.701 14 C 0.518 3.482 15 O -0.530 6.530 16 C 0.034 3.966 17 H 0.085 0.915 18 C 0.075 3.925 19 O -0.376 6.376 20 C 0.062 3.938 21 C -0.006 4.006 22 N -0.506 5.506 23 C 0.000 4.000 24 C 0.453 3.547 25 F -0.171 7.171 26 F -0.187 7.187 27 F -0.179 7.179 28 H 0.276 0.724 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.412 0.588 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -21.611 -0.863 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.355 5.355 14 C 0.302 3.698 15 O -0.407 6.407 16 C -0.078 4.078 17 H 0.103 0.897 18 C -0.003 4.003 19 O -0.293 6.293 20 C -0.015 4.015 21 C -0.134 4.134 22 N -0.233 5.233 23 C -0.128 4.128 24 C 0.399 3.601 25 F -0.152 7.152 26 F -0.169 7.169 27 F -0.161 7.161 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.530 -21.590 -0.437 21.742 hybrid contribution 0.251 0.712 -0.909 1.182 sum 2.781 -20.878 -1.346 21.105 Atomic orbital electron populations 1.69599 1.06038 1.28763 1.48942 1.25333 0.95666 0.99989 0.96613 0.85867 0.78800 0.80077 0.79208 1.19742 1.20815 1.19711 1.19687 0.93461 0.81962 1.48546 0.87662 1.41789 1.09500 1.04480 1.62299 1.19688 0.88292 0.84941 0.85991 1.90502 1.13647 1.86756 1.57570 1.20998 0.91739 0.85626 1.03475 1.45691 1.11890 1.04419 1.73532 1.20001 0.89211 0.83435 0.77121 1.90616 1.16308 1.84166 1.49585 1.22388 0.94498 0.88868 1.02058 0.89732 1.22651 0.92260 0.90297 0.95050 1.88051 1.32690 1.13903 1.94700 1.22738 0.95670 0.86434 0.96614 1.23510 0.95410 0.94743 0.99723 1.62073 1.19484 1.01562 1.40133 1.23812 1.03048 0.91122 0.94862 1.20557 0.75166 0.90356 0.74029 1.93210 1.86958 1.89733 1.45338 1.93155 1.54099 1.78254 1.91349 1.93201 1.63430 1.96974 1.62448 0.91444 0.77010 0.89670 0.89533 0.74952 0.86933 0.91020 0.87815 0.91669 0.88016 0.92600 0.90388 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 13.05 55.50 0.72 -22.52 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.31 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.88 7.16 -52.48 -0.38 2.50 16 9 N -0.55 -12.95 5.29 -10.96 -0.06 -13.01 16 10 C 0.43 9.15 7.85 -10.98 -0.09 9.06 16 11 O -0.60 -14.43 15.24 5.55 0.08 -14.34 16 12 C 0.11 1.81 6.15 -5.19 -0.03 1.78 16 13 N -0.70 -10.13 5.43 -61.47 -0.33 -10.46 16 14 C 0.52 6.99 6.88 -10.99 -0.08 6.91 16 15 O -0.53 -8.42 13.76 5.56 0.08 -8.34 16 16 C 0.03 0.36 2.31 -68.76 -0.16 0.21 16 17 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 18 C 0.08 0.77 6.17 37.21 0.23 1.00 16 19 O -0.38 -3.93 10.83 -35.23 -0.38 -4.31 16 20 C 0.06 0.52 7.01 37.21 0.26 0.79 16 21 C -0.01 -0.06 4.17 -3.71 -0.02 -0.07 16 22 N -0.51 -5.42 4.36 -227.73 -0.99 -6.42 16 23 C 0.00 0.00 4.72 -3.83 -0.02 -0.02 16 24 C 0.45 4.59 2.82 37.16 0.10 4.69 16 25 F -0.17 -1.91 16.16 2.25 0.04 -1.87 16 26 F -0.19 -1.77 14.01 2.25 0.03 -1.74 16 27 F -0.18 -1.92 17.32 2.25 0.04 -1.88 16 28 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.84 6.93 -40.82 -0.28 5.56 16 33 H 0.11 1.05 7.68 -51.93 -0.40 0.65 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.88 4.96 -51.93 -0.26 0.62 16 38 H 0.06 0.48 7.84 -51.93 -0.41 0.08 16 39 H 0.08 0.71 7.99 -51.93 -0.42 0.30 16 40 H 0.15 1.87 5.74 -51.93 -0.30 1.58 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -29.83 342.94 -5.09 -34.92 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.43 Total: 13.09 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -0.03 Total: 16.72 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.66 Total: -52.41 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.22 Total: -27.00 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.83 -5.09 -34.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.798 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds