Wall clock time and date at job start Tue Mar 31 2020 22:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48506 * 109.47347 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47653 * 119.99702 * 3 2 1 7 7 C 1.38946 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99746 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99744 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00121 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99910 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.50608 * 300.08665 * 16 14 13 18 18 C 1.53092 * 109.54073 * 60.19631 * 16 14 13 19 19 O 1.43021 * 109.25905 * 176.80576 * 18 16 14 20 20 C 1.43020 * 113.73351 * 301.32858 * 19 18 16 21 21 C 1.53097 * 109.25585 * 58.67346 * 20 19 18 22 22 N 1.47013 * 109.50312 * 180.02562 * 16 14 13 23 23 C 1.46896 * 111.00213 * 57.63306 * 22 16 14 24 24 C 1.52997 * 109.47246 * 164.56480 * 23 22 16 25 25 F 1.39894 * 109.47312 * 52.56940 * 24 23 22 26 26 F 1.39904 * 109.46864 * 292.57112 * 24 23 22 27 27 F 1.39901 * 109.47218 * 172.57509 * 24 23 22 28 28 H 0.96993 * 120.00146 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99938 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46871 * 60.00262 * 12 10 9 31 31 H 1.08996 * 109.47606 * 300.00220 * 12 10 9 32 32 H 0.97002 * 119.99501 * 0.02562 * 13 12 10 33 33 H 1.08999 * 109.50926 * 296.73393 * 18 16 14 34 34 H 1.08994 * 109.51231 * 56.82577 * 18 16 14 35 35 H 1.09006 * 109.50216 * 178.60375 * 20 19 18 36 36 H 1.08991 * 109.50676 * 298.68813 * 20 19 18 37 37 H 1.09000 * 109.50367 * 183.21865 * 21 20 19 38 38 H 1.08990 * 109.51414 * 63.08480 * 21 20 19 39 39 H 1.08997 * 109.47133 * 44.55628 * 23 22 16 40 40 H 1.09006 * 109.47058 * 284.56455 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1960 -5.9764 0.0016 14 6 1.7468 -7.2472 0.0017 15 8 0.5545 -7.4688 0.0008 16 6 2.7262 -8.3925 0.0016 17 1 3.3541 -8.3344 -0.8875 18 6 3.6041 -8.3157 1.2534 19 8 4.4803 -9.4456 1.2853 20 6 3.7984 -10.7028 1.2869 21 6 2.9226 -10.8038 0.0353 22 7 1.9919 -9.6662 0.0010 23 6 1.0933 -9.7553 -1.1575 24 6 0.6449 -11.2060 -1.3448 25 9 0.1228 -11.6919 -0.1413 26 9 1.7409 -11.9872 -1.7268 27 9 -0.3388 -11.2656 -2.3378 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 0.0005 30 1 0.6170 -4.9209 -0.8886 31 1 0.6176 -4.9206 0.8913 32 1 3.1497 -5.7991 0.0019 33 1 4.1933 -7.3990 1.2291 34 1 2.9725 -8.3189 2.1418 35 1 4.5282 -11.5126 1.2867 36 1 3.1732 -10.7766 2.1765 37 1 2.3574 -11.7355 0.0608 38 1 3.5535 -10.7843 -0.8532 39 1 1.6184 -9.4189 -2.0514 40 1 0.2205 -9.1240 -0.9898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:09 Heat of formation + Delta-G solvation = -269.603209 kcal Electronic energy + Delta-G solvation = -30319.625213 eV Core-core repulsion = 25333.334720 eV Total energy + Delta-G solvation = -4986.290493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.29340 -48.80099 -48.62994 -41.75856 -40.37908 -39.49430 -37.09171 -36.21664 -35.34959 -33.39605 -32.82224 -31.32858 -29.31893 -27.25545 -26.56510 -25.58987 -23.91499 -22.53085 -21.40788 -21.19835 -20.10837 -19.79631 -19.62918 -18.79302 -18.50935 -17.61362 -17.25959 -17.24411 -16.84995 -16.59771 -16.45005 -16.20159 -15.94592 -15.86064 -15.60837 -15.44121 -15.36922 -15.19983 -15.08106 -14.93562 -14.83018 -14.78642 -14.04407 -13.80604 -13.60964 -13.53129 -13.32866 -13.14910 -12.88870 -12.88252 -12.46009 -12.32678 -12.13732 -11.73618 -11.55036 -11.17773 -10.66534 -10.54856 -10.26399 -10.08000 -9.70789 -8.50360 -6.00334 1.37567 1.40350 1.43668 1.53361 1.56325 1.77374 1.92445 2.22565 2.31791 2.67306 2.78514 2.97875 3.11880 3.17278 3.25997 3.52097 3.61413 3.77609 3.85684 4.03815 4.14419 4.20036 4.22735 4.43204 4.45295 4.47818 4.48358 4.63169 4.74999 4.87403 5.20935 5.31061 5.39216 5.53206 5.92508 5.99035 6.39941 6.49823 7.03662 7.05576 7.45613 7.95536 8.66185 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002377 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.964014 B =11776.886565 C =12750.034452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.123 3.877 13 N -0.701 5.701 14 C 0.523 3.477 15 O -0.552 6.552 16 C 0.042 3.958 17 H 0.101 0.899 18 C 0.077 3.923 19 O -0.385 6.385 20 C 0.059 3.941 21 C -0.004 4.004 22 N -0.519 5.519 23 C 0.002 3.998 24 C 0.459 3.541 25 F -0.178 7.178 26 F -0.181 7.181 27 F -0.183 7.183 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -22.403 -1.019 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.355 5.355 14 C 0.309 3.691 15 O -0.431 6.431 16 C -0.070 4.070 17 H 0.119 0.881 18 C 0.000 4.000 19 O -0.303 6.303 20 C -0.017 4.017 21 C -0.131 4.131 22 N -0.246 5.246 23 C -0.126 4.126 24 C 0.405 3.595 25 F -0.159 7.159 26 F -0.162 7.162 27 F -0.164 7.164 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.223 -22.414 -0.593 22.652 hybrid contribution 0.043 0.834 -0.856 1.196 sum 3.266 -21.580 -1.449 21.874 Atomic orbital electron populations 1.69665 1.06983 1.29668 1.49319 1.26090 0.96487 1.02622 0.95833 0.84964 0.77747 0.76412 0.79113 1.19501 1.19798 1.19483 1.19696 0.92985 0.83567 1.50371 0.89492 1.41844 1.09600 1.04638 1.63433 1.20441 0.88147 0.85929 0.83532 1.90482 1.15117 1.87520 1.57983 1.20795 0.91554 0.83604 1.04546 1.45669 1.11600 1.04298 1.73978 1.20416 0.89335 0.83433 0.75944 1.90623 1.17546 1.84436 1.50471 1.22329 0.93757 0.87789 1.03101 0.88140 1.22635 0.92183 0.90817 0.94409 1.88047 1.33070 1.14478 1.94669 1.22922 0.96235 0.86286 0.96278 1.23547 0.95202 0.94051 1.00284 1.62048 1.20125 1.01966 1.40463 1.23709 1.02570 0.90923 0.95438 1.20457 0.75103 0.90260 0.73682 1.93197 1.87106 1.89822 1.45798 1.93165 1.53713 1.78088 1.91266 1.93195 1.63670 1.96986 1.62577 0.91103 0.76710 0.88435 0.88517 0.74634 0.86235 0.91615 0.85424 0.91764 0.87718 0.91942 0.88977 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.60 13.05 21.66 0.28 -47.32 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.99 40.76 29.55 68.60 2.03 42.79 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.34 -17.94 9.68 84.04 0.81 -17.13 16 8 H 0.09 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.56 -26.78 5.29 -306.98 -1.62 -28.40 16 10 C 0.43 18.55 7.85 87.66 0.69 19.24 16 11 O -0.62 -30.10 15.24 -3.06 -0.05 -30.15 16 12 C 0.12 3.97 6.15 85.63 0.53 4.49 16 13 N -0.70 -19.42 5.43 -466.78 -2.54 -21.96 16 14 C 0.52 13.42 6.88 87.66 0.60 14.03 16 15 O -0.55 -17.03 13.76 -3.03 -0.04 -17.07 16 16 C 0.04 0.83 2.31 44.18 0.10 0.94 16 17 H 0.10 1.71 8.13 -2.39 -0.02 1.69 16 18 C 0.08 1.46 6.17 72.01 0.44 1.90 16 19 O -0.38 -7.26 10.83 -148.98 -1.61 -8.87 16 20 C 0.06 0.87 7.01 72.01 0.50 1.37 16 21 C 0.00 -0.06 4.17 86.31 0.36 0.30 16 22 N -0.52 -10.28 4.36 -874.41 -3.82 -14.10 16 23 C 0.00 0.04 4.72 86.30 0.41 0.45 16 24 C 0.46 8.69 2.82 71.98 0.20 8.89 16 25 F -0.18 -3.78 16.16 44.97 0.73 -3.05 16 26 F -0.18 -3.09 14.01 44.97 0.63 -2.46 16 27 F -0.18 -3.72 17.32 44.97 0.78 -2.94 16 28 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 29 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.41 11.29 6.93 -92.71 -0.64 10.65 16 33 H 0.12 2.05 7.68 -2.39 -0.02 2.04 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.60 4.96 -2.39 -0.01 1.59 16 38 H 0.06 0.92 7.84 -2.39 -0.02 0.90 16 39 H 0.09 1.51 7.99 -2.39 -0.02 1.50 16 40 H 0.14 3.22 5.74 -2.38 -0.01 3.21 16 Total: -1.00 -62.78 342.94 -0.36 -63.13 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.24 Total: 35.95 kcal Atomic # 6 Polarization: 29.34 SS G_CDS: 5.12 Total: 34.46 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -7.69 Total: -111.78 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -1.70 Total: -56.09 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 2.14 Total: -8.46 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -62.78 -0.36 -63.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.469 kcal (2) G-P(sol) polarization free energy of solvation -62.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds