Wall clock time and date at job start Tue Mar 31 2020 22:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00474 * 2 1 4 4 H 1.48493 * 109.47487 * 89.99423 * 3 2 1 5 5 H 1.48504 * 109.47265 * 210.00121 * 3 2 1 6 6 H 1.48503 * 109.46765 * 329.99627 * 3 2 1 7 7 C 1.38955 * 119.99646 * 180.27115 * 2 1 3 8 8 H 1.08003 * 119.99798 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00068 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00279 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00322 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.34785 * 120.00053 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99642 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99705 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.51437 * 33.34511 * 16 14 13 18 18 C 1.53105 * 109.50930 * 273.25559 * 16 14 13 19 19 O 1.43012 * 109.26207 * 183.21918 * 18 16 14 20 20 C 1.43023 * 113.73696 * 58.67047 * 19 18 16 21 21 C 1.53098 * 109.25796 * 301.33346 * 20 19 18 22 22 N 1.47012 * 109.29698 * 56.82661 * 21 20 19 23 23 C 1.46900 * 111.03677 * 177.65245 * 22 21 20 24 24 C 1.53000 * 109.46766 * 287.01285 * 23 22 21 25 25 F 1.39902 * 109.47362 * 65.85104 * 24 23 22 26 26 F 1.39900 * 109.47372 * 185.85063 * 24 23 22 27 27 F 1.39909 * 109.47237 * 305.85120 * 24 23 22 28 28 H 0.97004 * 119.99177 * 359.72976 * 1 2 3 29 29 H 0.97001 * 120.00220 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47422 * 300.00025 * 12 10 9 31 31 H 1.09002 * 109.46772 * 59.99652 * 12 10 9 32 32 H 0.96996 * 120.00391 * 359.97438 * 13 12 10 33 33 H 1.09003 * 109.50576 * 303.15790 * 18 16 14 34 34 H 1.09002 * 109.50068 * 63.28300 * 18 16 14 35 35 H 1.08996 * 109.50019 * 61.26448 * 20 19 18 36 36 H 1.09001 * 109.50493 * 181.39406 * 20 19 18 37 37 H 1.09001 * 109.49995 * 176.78372 * 21 20 19 38 38 H 1.09007 * 109.50483 * 296.86463 * 21 20 19 39 39 H 1.08996 * 109.47521 * 47.00910 * 23 22 21 40 40 H 1.08998 * 109.47156 * 167.01325 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5458 1.4400 -0.7001 6 1 1.4457 2.6526 -0.7001 7 6 2.0088 -1.2034 -0.0057 8 1 1.4687 -2.1387 -0.0097 9 7 3.3798 -1.2035 -0.0052 10 6 4.0537 -2.3706 -0.0112 11 8 3.4472 -3.4211 -0.0167 12 6 5.5606 -2.3708 -0.0112 13 7 6.0489 -3.7520 -0.0177 14 6 7.3740 -3.9983 -0.0184 15 8 8.1621 -3.0766 -0.0140 16 6 7.8762 -5.4191 -0.0257 17 1 7.1886 -6.0454 -0.5941 18 6 7.9685 -5.9362 1.4124 19 8 8.5161 -7.2573 1.4045 20 6 9.8142 -7.3390 0.8098 21 6 9.7406 -6.8361 -0.6343 22 7 9.2088 -5.4656 -0.6450 23 6 9.1739 -4.9242 -2.0102 24 6 10.5979 -4.6014 -2.4673 25 9 11.3328 -5.7868 -2.5760 26 9 10.5550 -3.9635 -3.7116 27 9 11.2081 -3.7585 -1.5320 28 1 -0.4849 0.8401 0.0040 29 1 3.8649 -0.3635 -0.0012 30 1 5.9240 -1.8524 -0.8985 31 1 5.9240 -1.8615 0.8814 32 1 5.4186 -4.4892 -0.0209 33 1 8.6135 -5.2783 1.9950 34 1 6.9732 -5.9573 1.8562 35 1 10.5128 -6.7219 1.3749 36 1 10.1537 -8.3747 0.8178 37 1 10.7383 -6.8429 -1.0733 38 1 9.0840 -7.4860 -1.2130 39 1 8.7349 -5.6614 -2.6824 40 1 8.5726 -4.0152 -2.0253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343508106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:13 Heat of formation + Delta-G solvation = -247.170238 kcal Electronic energy + Delta-G solvation = -30431.294356 eV Core-core repulsion = 25445.976629 eV Total energy + Delta-G solvation = -4985.317726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.29463 -47.89987 -47.64061 -40.83686 -39.15672 -38.26124 -36.29237 -34.65854 -33.89186 -32.05594 -31.82730 -30.66136 -28.16692 -26.44359 -25.25887 -24.16473 -23.09568 -21.53670 -20.32901 -19.71996 -18.94409 -18.77512 -18.55218 -17.86388 -17.56093 -16.82494 -16.59110 -15.94362 -15.67840 -15.42089 -15.31476 -14.94554 -14.85944 -14.76354 -14.62110 -14.46757 -14.19750 -14.14838 -14.01960 -13.87528 -13.85120 -13.30739 -13.01327 -12.87909 -12.57943 -12.35790 -12.26114 -12.14570 -12.08764 -11.67679 -11.29420 -11.04363 -10.70115 -10.29870 -10.12829 -9.83536 -9.77099 -9.12521 -9.04314 -8.87302 -8.37947 -6.47412 -4.00466 2.30530 2.43751 2.77359 2.94165 2.99111 3.07400 3.09952 3.46641 3.52917 3.54773 3.78810 3.97570 4.14846 4.36759 4.39236 4.45873 4.51652 4.61059 4.70273 4.81124 4.86265 5.01110 5.07040 5.19684 5.30742 5.37949 5.50341 5.54764 5.65302 5.67854 6.02358 6.20911 6.33621 6.67727 7.35831 7.49474 7.91988 8.11099 8.37158 8.74441 9.22211 9.54496 10.64544 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.002717 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.259641 B =10303.321555 C =11431.856993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.435 3.565 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.520 6.520 16 C 0.037 3.963 17 H 0.081 0.919 18 C 0.078 3.922 19 O -0.375 6.375 20 C 0.063 3.937 21 C -0.002 4.002 22 N -0.509 5.509 23 C 0.005 3.995 24 C 0.463 3.537 25 F -0.186 7.186 26 F -0.183 7.183 27 F -0.165 7.165 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.537 -11.531 -2.199 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.221 3.779 11 O -0.464 6.464 12 C -0.021 4.021 13 N -0.359 5.359 14 C 0.295 3.705 15 O -0.395 6.395 16 C -0.075 4.075 17 H 0.098 0.902 18 C 0.000 4.000 19 O -0.293 6.293 20 C -0.014 4.014 21 C -0.129 4.129 22 N -0.234 5.234 23 C -0.125 4.125 24 C 0.408 3.592 25 F -0.168 7.168 26 F -0.164 7.164 27 F -0.146 7.146 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.696 -11.284 -1.847 24.525 hybrid contribution 0.006 0.945 -0.825 1.254 sum 21.703 -10.340 -2.671 24.188 Atomic orbital electron populations 1.69620 1.05741 1.27920 1.47780 1.25077 0.95538 0.98215 0.97005 0.86670 0.79896 0.83727 0.79193 1.19329 1.19233 1.19916 1.19443 0.78897 0.96830 1.48869 0.86035 1.42122 1.07745 1.06133 1.65088 1.19580 0.87935 0.84949 0.85412 1.90548 1.69124 1.30853 1.55869 1.21012 0.94029 0.83559 1.03548 1.45749 1.06704 1.09595 1.73833 1.20065 0.82409 0.90404 0.77637 1.90757 1.55117 1.45264 1.48387 1.22331 0.90254 0.95299 0.99635 0.90150 1.22588 1.00996 0.84356 0.92040 1.88051 1.32883 1.27846 1.80548 1.22721 0.85310 1.02163 0.91231 1.23351 1.02749 0.87352 0.99480 1.61702 1.23269 1.21883 1.16588 1.23328 0.92440 1.04977 0.91770 1.20296 0.89455 0.74426 0.75013 1.93078 1.80446 1.47536 1.95733 1.93195 1.96817 1.82545 1.43859 1.93245 1.84971 1.71412 1.64959 0.91295 0.79213 0.89591 0.89435 0.74835 0.90949 0.87013 0.91650 0.87726 0.87412 0.92801 0.89821 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 13.96 55.50 0.77 -23.61 16 2 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 3 Si 0.88 18.48 27.74 -169.99 -4.71 13.77 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.11 6.52 56.52 0.37 -4.75 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 8 H 0.12 3.71 7.39 -52.48 -0.39 3.32 16 9 N -0.57 -12.75 5.09 -10.96 -0.06 -12.80 16 10 C 0.44 8.97 7.85 -10.99 -0.09 8.89 16 11 O -0.58 -13.82 15.24 5.54 0.08 -13.74 16 12 C 0.11 1.66 6.15 -5.20 -0.03 1.63 16 13 N -0.70 -9.69 5.53 -61.48 -0.34 -10.03 16 14 C 0.51 6.64 5.78 -10.98 -0.06 6.58 16 15 O -0.52 -8.27 15.50 5.56 0.09 -8.18 16 16 C 0.04 0.38 2.38 -68.75 -0.16 0.21 16 17 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 18 C 0.08 0.76 6.27 37.21 0.23 0.99 16 19 O -0.38 -3.70 10.83 -35.23 -0.38 -4.08 16 20 C 0.06 0.48 7.01 37.21 0.26 0.74 16 21 C 0.00 -0.02 5.33 -3.71 -0.02 -0.04 16 22 N -0.51 -5.14 4.05 -227.72 -0.92 -6.07 16 23 C 0.00 0.04 4.74 -3.82 -0.02 0.03 16 24 C 0.46 4.86 3.25 37.16 0.12 4.98 16 25 F -0.19 -1.78 14.50 2.25 0.03 -1.75 16 26 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 27 F -0.16 -2.10 17.13 2.25 0.04 -2.06 16 28 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.37 7.33 5.76 -40.82 -0.24 7.09 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.41 5.63 7.44 -40.82 -0.30 5.32 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.81 5.45 -51.93 -0.28 0.52 16 38 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.13 1.41 5.91 -51.93 -0.31 1.10 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -31.88 345.46 -4.65 -36.53 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.48 Total: 12.14 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -0.02 Total: 16.63 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.54 Total: -52.51 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.21 Total: -26.00 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.71 Total: 13.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.88 -4.65 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.638 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds